{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,22]],"date-time":"2026-01-22T22:40:20Z","timestamp":1769121620720,"version":"3.49.0"},"reference-count":162,"publisher":"Springer Science and Business Media LLC","issue":"7","license":[{"start":{"date-parts":[[2021,1,28]],"date-time":"2021-01-28T00:00:00Z","timestamp":1611792000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2021,1,28]],"date-time":"2021-01-28T00:00:00Z","timestamp":1611792000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Cell. Mol. Life Sci."],"published-print":{"date-parts":[[2021,4]]},"DOI":"10.1007\/s00018-020-03740-3","type":"journal-article","created":{"date-parts":[[2021,1,28]],"date-time":"2021-01-28T10:44:04Z","timestamp":1611830644000},"page":"3285-3298","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":54,"title":["The role of micropeptides in biology"],"prefix":"10.1007","volume":"78","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3636-5805","authenticated-orcid":false,"given":"Rui","family":"Vitorino","sequence":"first","affiliation":[]},{"given":"Sofia","family":"Guedes","sequence":"additional","affiliation":[]},{"given":"Francisco","family":"Amado","sequence":"additional","affiliation":[]},{"given":"Manuel","family":"Santos","sequence":"additional","affiliation":[]},{"given":"Nobuyoshi","family":"Akimitsu","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2021,1,28]]},"reference":[{"key":"3740_CR1","unstructured":"Dewitte M (2018) Computational protein discovery: can novel insights in the human transcriptome help us understand our genome? (eds) Ghent University. https:\/\/lib.ugent.be\/fulltxt\/RUG01\/002\/508\/664\/RUG01-002508664_2018_0001_AC.pdf"},{"issue":"1","key":"3740_CR2","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1186\/s13059-016-0873-8","volume":"17","author":"AE Kornienko","year":"2016","unstructured":"Kornienko AE, Dotter CP, Guenzl PM, Gisslinger H, Gisslinger B, Cleary C, Kralovics R, Pauler FM, Barlow DP (2016) Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans. Genome Biol 17(1):14","journal-title":"Genome Biol"},{"issue":"9","key":"3740_CR3","doi-asserted-by":"publisher","first-page":"1775","DOI":"10.1101\/gr.132159.111","volume":"22","author":"T Derrien","year":"2012","unstructured":"Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guig\u00f3 R (2012) The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 22(9):1775\u20131789. https:\/\/doi.org\/10.1101\/gr.132159.111","journal-title":"Genome Res"},{"issue":"7","key":"3740_CR4","doi-asserted-by":"crossref","first-page":"1029","DOI":"10.1016\/j.cclet.2018.04.027","volume":"29","author":"X Yin","year":"2018","unstructured":"Yin X, Hu J, Xu H (2018) Distribution of micropeptide-coding sORFs in transcripts. Chin Chem Lett 29(7):1029\u20131032","journal-title":"Chin Chem Lett"},{"issue":"6","key":"3740_CR5","doi-asserted-by":"crossref","first-page":"a032680","DOI":"10.1101\/cshperspect.a032680","volume":"11","author":"M Chekulaeva","year":"2019","unstructured":"Chekulaeva M, Rajewsky N (2019) Roles of long noncoding RNAs and circular RNAs in translation. Cold Spring Harbor Perspect Biol 11(6):a032680","journal-title":"Cold Spring Harbor Perspect Biol"},{"issue":"11","key":"3740_CR6","first-page":"626","volume":"16","author":"D Waldron","year":"2015","unstructured":"Waldron D (2015) Genomics: identification of sORFs. Nat Rev Genet 16(11):626","journal-title":"Nat Rev Genet"},{"issue":"D1","key":"3740_CR7","doi-asserted-by":"crossref","first-page":"D324","DOI":"10.1093\/nar\/gkv1175","volume":"44","author":"V Olexiouk","year":"2015","unstructured":"Olexiouk V, Crapp\u00e9 J, Verbruggen S, Verhegen K, Martens L, Menschaert G (2015) sORFs.org: a repository of small ORFs identified by ribosome profiling. Nucleic Acids Res 44(D1):D324\u2013D329","journal-title":"Nucleic Acids Res"},{"issue":"9","key":"3740_CR8","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1016\/j.tcb.2017.04.006","volume":"27","author":"CA Makarewich","year":"2017","unstructured":"Makarewich CA, Olson EN (2017) Mining for micropeptides. Trends Cell Biol 27(9):685\u2013696","journal-title":"Trends Cell Biol"},{"issue":"12","key":"3740_CR9","doi-asserted-by":"crossref","first-page":"e1007764","DOI":"10.1371\/journal.pgen.1007764","volume":"14","author":"ME Sousa","year":"2018","unstructured":"Sousa ME, Farkas MH (2018) Micropeptide. PLoS Genet 14(12):e1007764","journal-title":"PLoS Genet"},{"key":"3740_CR10","doi-asserted-by":"crossref","first-page":"391","DOI":"10.1146\/annurev-cellbio-100616-060516","volume":"33","author":"S Plaza","year":"2017","unstructured":"Plaza S, Menschaert G, Payre F (2017) In search of lost small peptides. Annu Rev Cell Dev Biol 33:391\u2013416","journal-title":"Annu Rev Cell Dev Biol"},{"issue":"3","key":"3740_CR11","first-page":"331","volume":"46","author":"J Drwiega","year":"2016","unstructured":"Drwiega J, Wang K, Shen T, Chaffin C, Youngblood P, Hardy R (2016) The significance of protein concentration on UPEP and UIFE analysis.: [51]. Ann Clin Lab Sci 46(3):331\u2013332","journal-title":"Ann Clin Lab Sci"},{"key":"3740_CR12","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1016\/j.cmet.2019.04.013","volume":"30","author":"PA Dumesic","year":"2019","unstructured":"Dumesic PA, Egan DF, Gut P, Tran MT, Parisi A, Chatterjee N, Jedrychowski M, Paschini M, Kazak L, Wilensky SE (2019) An evolutionarily conserved uORF regulates PGC1\u03b1 and oxidative metabolism in mice, flies, and bluefin tsuna. Cell Metab 30:190\u2013200","journal-title":"Cell Metab"},{"issue":"2","key":"3740_CR13","doi-asserted-by":"crossref","first-page":"1120","DOI":"10.1016\/j.ygeno.2019.06.026","volume":"112","author":"M Mortz","year":"2020","unstructured":"Mortz M, D\u00e9gletagne C, Romestaing C, Duchamp C (2020) Comparative genomic analysis identifies small open reading frames (sORFs) with peptide-encoding features in avian 16S rDNA. Genomics 112(2):1120\u20131127","journal-title":"Genomics"},{"issue":"4","key":"3740_CR14","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1016\/j.cell.2015.01.009","volume":"160","author":"DM Anderson","year":"2015","unstructured":"Anderson DM, Anderson KM, Chang C-L, Makarewich CA, Nelson BR, McAnally JR, Kasaragod P, Shelton JM, Liou J, Bassel-Duby R (2015) A micropeptide encoded by a putative long noncoding RNA regulates muscle performance. Cell 160(4):595\u2013606","journal-title":"Cell"},{"issue":"1","key":"3740_CR15","doi-asserted-by":"publisher","first-page":"4883","DOI":"10.1038\/s41467-019-12816-z","volume":"10","author":"Q Chu","year":"2019","unstructured":"Chu Q, Martinez TF, Novak SW, Donaldson CJ, Tan D, Vaughan JM, Chang T, Diedrich JK, Andrade L, Kim A, Zhang T, Manor U, Saghatelian A (2019) Regulation of the ER stress response by a mitochondrial microprotein. Nat Commun 10(1):4883. https:\/\/doi.org\/10.1038\/s41467-019-12816-z","journal-title":"Nat Commun"},{"key":"3740_CR16","doi-asserted-by":"crossref","first-page":"230","DOI":"10.3389\/fphys.2017.00230","volume":"8","author":"B Cai","year":"2017","unstructured":"Cai B, Li Z, Ma M, Wang Z, Han P, Abdalla BA, Nie Q, Zhang X (2017) LncRNA-Six1 encodes a micropeptide to activate Six1 in Cis and is involved in cell proliferation and muscle growth. Front Physiol 8:230","journal-title":"Front Physiol"},{"issue":"457","key":"3740_CR17","doi-asserted-by":"crossref","first-page":"ra119","DOI":"10.1126\/scisignal.aaj1460","volume":"9","author":"DM Anderson","year":"2016","unstructured":"Anderson DM, Makarewich CA, Anderson KM, Shelton JM, Bezprozvannaya S, Bassel-Duby R, Olson EN (2016) Widespread control of calcium signaling by a family of SERCA-inhibiting micropeptides. Sci Signal 9(457):ra119","journal-title":"Sci Signal"},{"issue":"3","key":"3740_CR18","doi-asserted-by":"crossref","first-page":"30a","DOI":"10.1016\/j.bpj.2018.11.207","volume":"116","author":"DR Singh","year":"2019","unstructured":"Singh DR, Cho E, Dalton M, Pribadi M, Makarewich CA, Olson EN, Robia SL (2019) Oligomerization of micropeptides that regulate SERCA. Biophys J 116(3):30a\u201331a","journal-title":"Biophys J"},{"key":"3740_CR19","doi-asserted-by":"crossref","first-page":"066","DOI":"10.26502\/jbsb.5107009","volume":"2","author":"SY Morozov","year":"2019","unstructured":"Morozov SY, Ryazantsev DY, Tatiana NE (2019) Bioinformatics analysis of the novel conserved micropeptides encoded by the plants of family Brassicaceae. J Bioinform and Syst Biol 2:066\u2013077","journal-title":"J Bioinform and Syst Biol"},{"key":"3740_CR20","doi-asserted-by":"crossref","unstructured":"Olexiouk V, Menschaert G (2016) Identification of small novel coding sequences, a proteogenomics endeavor. In: V\u00e9gv\u00e1ri \u00c1. (eds) Proteogenomics. Advances in experimental medicine and biology, vol 926. Springer, Cham","DOI":"10.1007\/978-3-319-42316-6_4"},{"key":"3740_CR21","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.canlet.2017.12.015","volume":"417","author":"Y Li","year":"2018","unstructured":"Li Y, Chen X, Sun H, Wang H (2018) Long non-coding RNAs in the regulation of skeletal myogenesis and muscle diseases. Cancer Lett 417:58\u201364","journal-title":"Cancer Lett"},{"issue":"3","key":"3740_CR22","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1038\/ng.3235","volume":"47","author":"K Vogan","year":"2015","unstructured":"Vogan K (2015) Micropeptide regulates muscle performance. Nat Genet 47(3):198","journal-title":"Nat Genet"},{"issue":"8","key":"3740_CR23","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1038\/s41684-018-0122-8","volume":"47","author":"N Clark","year":"2018","unstructured":"Clark N (2018) Small but important. Lab Anim 47(8):207\u2013207","journal-title":"Lab Anim"},{"key":"3740_CR24","doi-asserted-by":"crossref","first-page":"e38319","DOI":"10.7554\/eLife.38319","volume":"7","author":"CA Makarewich","year":"2018","unstructured":"Makarewich CA, Munir AZ, Schiattarella GG, Bezprozvannaya S, Raguimova ON, Cho EE, Vidal AH, Robia SL, Bassel-Duby R, Olson EN (2018) The DWORF micropeptide enhances contractility and prevents heart failure in a mouse model of dilated cardiomyopathy. Elife 7:e38319","journal-title":"Elife"},{"issue":"7","key":"3740_CR25","first-page":"1","volume":"10","author":"Y-F Lin","year":"2019","unstructured":"Lin Y-F, Xiao M-H, Chen H-X, Meng Y, Zhao N, Yang L, Tang H, Wang J-L, Liu X, Zhu Y (2019) A novel mitochondrial micropeptide MPM enhances mitochondrial respiratory activity and promotes myogenic differentiation. Cell Death Dis 10(7):1\u201311","journal-title":"Cell Death Dis"},{"issue":"1","key":"3740_CR26","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1186\/s12859-019-3033-9","volume":"20","author":"M Zhu","year":"2019","unstructured":"Zhu M, Gribskov M (2019) MiPepid: MicroPeptide identification tool using machine learning. BMC Bioinform 20(1):559","journal-title":"BMC Bioinform"},{"issue":"15","key":"3740_CR27","doi-asserted-by":"crossref","first-page":"3864","DOI":"10.1073\/pnas.1800052115","volume":"115","author":"P Bi","year":"2018","unstructured":"Bi P, McAnally JR, Shelton JM, S\u00e1nchez-Ortiz E, Bassel-Duby R, Olson EN (2018) Fusogenic micropeptide Myomixer is essential for satellite cell fusion and muscle regeneration. Proc Natl Acad Sci 115(15):3864\u20133869","journal-title":"Proc Natl Acad Sci"},{"issue":"21","key":"3740_CR28","doi-asserted-by":"publisher","first-page":"eaaz2059","DOI":"10.1126\/sciadv.aaz2059","volume":"6","author":"L Niu","year":"2020","unstructured":"Niu L, Lou F, Sun Y, Sun L, Cai X, Liu Z, Zhou H, Wang H, Wang Z, Bai J, Yin Q, Zhang J, Chen L, Peng D, Xu Z, Gao Y, Tang S, Fan L, Wang H (2020) A micropeptide encoded by lncRNA MIR155HG suppresses autoimmune inflammation via modulating antigen presentation. Sci Adv 6(21):eaaz2059. https:\/\/doi.org\/10.1126\/sciadv.aaz2059","journal-title":"Sci Adv"},{"key":"3740_CR29","doi-asserted-by":"publisher","DOI":"10.1158\/0008-5472.can-19-3440","author":"S Wu","year":"2020","unstructured":"Wu S, Zhang L, Deng J, Guo B, Li F, Wang Y, Wu R, Zhang S, Lu J, Zhou Y (2020) A novel micropeptide encoded by Y-linked LINC00278 links cigarette smoking and AR signaling in male esophageal squamous cell carcinoma. Cancer Res. https:\/\/doi.org\/10.1158\/0008-5472.can-19-3440","journal-title":"Cancer Res"},{"issue":"14","key":"3740_CR30","doi-asserted-by":"publisher","first-page":"6708","DOI":"10.1021\/jacs.0c00706","volume":"142","author":"M Li","year":"2020","unstructured":"Li M, Li X, Zhang Y, Wu H, Zhou H, Ding X, Zhang X, Jin X, Wang Y, Yin X, Li C, Yang P, Xu H (2020) Micropeptide MIAC inhibits HNSCC progression by interacting with aquaporin 2. J Am Chem Soc 142(14):6708\u20136716. https:\/\/doi.org\/10.1021\/jacs.0c00706","journal-title":"J Am Chem Soc"},{"issue":"1","key":"3740_CR31","doi-asserted-by":"publisher","first-page":"e102190","DOI":"10.15252\/embj.2019102190","volume":"39","author":"B Guo","year":"2020","unstructured":"Guo B, Wu S, Zhu X, Zhang L, Deng J, Li F, Wang Y, Zhang S, Wu R, Lu J, Zhou Y (2020) Micropeptide CIP2A-BP encoded by LINC00665 inhibits triple-negative breast cancer progression. EMBO J 39(1):e102190. https:\/\/doi.org\/10.15252\/embj.2019102190","journal-title":"EMBO J"},{"issue":"2","key":"3740_CR32","doi-asserted-by":"publisher","first-page":"428","DOI":"10.4049\/jimmunol.1900791","volume":"204","author":"A Bhatta","year":"2020","unstructured":"Bhatta A, Atianand M, Jiang Z, Crabtree J, Blin J, Fitzgerald KA (2020) A mitochondrial micropeptide is required for activation of the Nlrp3 inflammasome. J Immunol 204(2):428\u2013437. https:\/\/doi.org\/10.4049\/jimmunol.1900791","journal-title":"J Immunol"},{"issue":"5","key":"3740_CR33","doi-asserted-by":"crossref","first-page":"a032698","DOI":"10.1101\/cshperspect.a032698","volume":"11","author":"NT Ingolia","year":"2019","unstructured":"Ingolia NT, Hussmann JA, Weissman JS (2019) Ribosome profiling: global views of translation. Cold Spring Harbor Perspect Biol 11(5):a032698","journal-title":"Cold Spring Harbor Perspect Biol"},{"issue":"1","key":"3740_CR34","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1016\/j.cell.2016.02.066","volume":"165","author":"NT Ingolia","year":"2016","unstructured":"Ingolia NT (2016) Ribosome footprint profiling of translation throughout the genome. Cell 165(1):22\u201333","journal-title":"Cell"},{"key":"3740_CR35","doi-asserted-by":"crossref","first-page":"S42","DOI":"10.1016\/j.joca.2016.01.100","volume":"24","author":"B McDermott","year":"2016","unstructured":"McDermott B, McDonagh B, Clegg P, Tew S (2016) Ribosome profiling: Providing a snapshot of active protein translation by chondrocytic cells in response to interleukin-1\u03b2 stimulation. Osteoarthritis Cartil 24:S42","journal-title":"Osteoarthritis Cartil"},{"key":"3740_CR36","doi-asserted-by":"publisher","unstructured":"Szavits-Nossan J, Ciandrini L (2019) Accurate measures of translation efficiency and traffic using ribosome profiling. BioRxiv 719302. https:\/\/doi.org\/10.1101\/719302","DOI":"10.1101\/719302"},{"issue":"3","key":"3740_CR37","doi-asserted-by":"crossref","first-page":"654","DOI":"10.1016\/j.ygyno.2017.10.006","volume":"147","author":"BJ Chen","year":"2017","unstructured":"Chen BJ, Byrne FL, Takenaka K, Modesitt SC, Olzomer EM, Mills JD, Farrell R, Hoehn KL, Janitz M (2017) Transcriptome landscape of long intergenic non-coding RNAs in endometrial cancer. Gynecol Oncol 147(3):654\u2013662","journal-title":"Gynecol Oncol"},{"issue":"6","key":"3740_CR38","doi-asserted-by":"crossref","first-page":"1858","DOI":"10.1016\/j.celrep.2014.05.023","volume":"7","author":"JE Smith","year":"2014","unstructured":"Smith JE, Alvarez-Dominguez JR, Kline N, Huynh NJ, Geisler S, Hu W, Coller J, Baker KE (2014) Translation of small open reading frames within unannotated RNA transcripts in Saccharomycescerevisiae. Cell Rep 7(6):1858\u20131866","journal-title":"Cell Rep"},{"issue":"1","key":"3740_CR39","doi-asserted-by":"crossref","first-page":"12502","DOI":"10.1038\/s41598-018-30332-w","volume":"8","author":"L Wyss","year":"2018","unstructured":"Wyss L, Waser M, Gebetsberger J, Zywicki M, Polacek N (2018) mRNA-specific translation regulation by a ribosome-associated ncRNA in Haloferax volcanii. Sci Rep 8(1):12502","journal-title":"Sci Rep"},{"key":"3740_CR40","doi-asserted-by":"crossref","first-page":"e00451-18","DOI":"10.1128\/mBio.00451-18","volume":"9","author":"E Dominguez","year":"2018","unstructured":"Dominguez E, Zarnowski R, Sanchez H, Covelli A, Westler W, Azadi P, Nett J, Mitchell A, Andes D (2018) Conservation and divergence in the Candida species biofilm matrix mannan-glucan complex structure, function, and genetic control. mBio 9:e00451-18","journal-title":"mBio"},{"key":"3740_CR41","doi-asserted-by":"crossref","first-page":"11663","DOI":"10.1038\/ncomms11663","volume":"7","author":"G-L Chew","year":"2016","unstructured":"Chew G-L, Pauli A, Schier AF (2016) Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish. Nat Commun 7:11663","journal-title":"Nat Commun"},{"issue":"9","key":"3740_CR42","doi-asserted-by":"crossref","first-page":"981","DOI":"10.1002\/embj.201488411","volume":"33","author":"AA Bazzini","year":"2014","unstructured":"Bazzini AA, Johnstone TG, Christiano R, Mackowiak SD, Obermayer B, Fleming ES, Vejnar CE, Lee MT, Rajewsky N, Walther TC (2014) Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation. EMBO J 33(9):981\u2013993","journal-title":"EMBO J"},{"issue":"7","key":"3740_CR43","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1016\/j.jacc.2016.11.056","volume":"69","author":"TR Webb","year":"2017","unstructured":"Webb TR, Erdmann J, Stirrups KE, Stitziel NO, Masca NG, Jansen H, Kanoni S, Nelson CP, Ferrario PG, K\u00f6nig IR (2017) Systematic evaluation of pleiotropy identifies 6 further loci associated with coronary artery disease. J Am Coll Cardiol 69(7):823\u2013836","journal-title":"J Am Coll Cardiol"},{"issue":"10","key":"3740_CR44","doi-asserted-by":"crossref","first-page":"1292","DOI":"10.1016\/j.molp.2018.08.005","volume":"11","author":"M Yang","year":"2018","unstructured":"Yang M, Lin X, Liu X, Zhang J, Ge F (2018) Genome annotation of a model diatom Phaeodactylumtricornutum using an integrated proteogenomic pipeline. Mol Plant 11(10):1292\u20131307","journal-title":"Mol Plant"},{"issue":"1","key":"3740_CR45","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1016\/j.cell.2013.06.009","volume":"154","author":"M Guttman","year":"2013","unstructured":"Guttman M, Russell P, Ingolia NT, Weissman JS, Lander ES (2013) Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. Cell 154(1):240\u2013251","journal-title":"Cell"},{"key":"3740_CR46","doi-asserted-by":"crossref","first-page":"e03528","DOI":"10.7554\/eLife.03528","volume":"3","author":"JL Aspden","year":"2014","unstructured":"Aspden JL, Eyre-Walker YC, Phillips RJ, Amin U, Mumtaz MAS, Brocard M, Couso J-P (2014) Extensive translation of small open reading frames revealed by Poly-Ribo-Seq. Elife 3:e03528","journal-title":"Elife"},{"issue":"8","key":"3740_CR47","doi-asserted-by":"crossref","first-page":"665","DOI":"10.1016\/j.tibs.2016.05.003","volume":"41","author":"JI Pueyo","year":"2016","unstructured":"Pueyo JI, Magny EG, Couso JP (2016) New peptides under the s (ORF) ace of the genome. Trends Biochem Sci 41(8):665\u2013678","journal-title":"Trends Biochem Sci"},{"key":"3740_CR48","doi-asserted-by":"crossref","first-page":"S126","DOI":"10.1074\/mcp.RA118.001218","volume":"18","author":"S Verbruggen","year":"2019","unstructured":"Verbruggen S, Ndah E, Van Criekinge W, Gessulat S, Kuster B, Wilhelm M, Van Damme P, Menschaert G (2019) PROTEOFORMER 2.0: further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms. Mol Cell Proteom 18:S126\u2013S140","journal-title":"Mol Cell Proteom"},{"key":"3740_CR49","unstructured":"Hasbrouck J, Tindal G (2017) An update to compiled ORF norms. Technical Report No. 1702. Online Submission"},{"issue":"1","key":"3740_CR50","doi-asserted-by":"crossref","first-page":"e68","DOI":"10.1002\/cpbi.68","volume":"65","author":"V Olexiouk","year":"2019","unstructured":"Olexiouk V, Menschaert G (2019) Using the sORFs. Org database. Org Database Curr Protoc Bioinform 65(1):e68","journal-title":"Org Database Curr Protoc Bioinform"},{"issue":"D1","key":"3740_CR51","doi-asserted-by":"crossref","first-page":"D230","DOI":"10.1093\/nar\/gky978","volume":"47","author":"H Wang","year":"2018","unstructured":"Wang H, Yang L, Wang Y, Chen L, Li H, Xie Z (2018) RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling. Nucleic Acids Res 47(D1):D230\u2013D234","journal-title":"Nucleic Acids Res"},{"issue":"3","key":"3740_CR52","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1080\/14789450.2019.1571919","volume":"16","author":"X Yin","year":"2019","unstructured":"Yin X, Jing Y, Xu H (2019) Mining for missed sORF-encoded peptides. Expert Rev Proteom 16(3):257\u2013266","journal-title":"Expert Rev Proteom"},{"issue":"1","key":"3740_CR53","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1007\/s13361-016-1545-3","volume":"28","author":"AC Leney","year":"2017","unstructured":"Leney AC, Heck AJ (2017) Native mass spectrometry: what is in the name? J Am Soc Mass Spectrom 28(1):5\u201313","journal-title":"J Am Soc Mass Spectrom"},{"key":"3740_CR54","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1016\/j.jchromb.2018.03.010","volume":"1083","author":"D Guillarme","year":"2018","unstructured":"Guillarme D, Desfontaine V, Heinisch S, Veuthey J-L (2018) What are the current solutions for interfacing supercritical fluid chromatography and mass spectrometry? J Chromatogr B 1083:160\u2013170","journal-title":"J Chromatogr B"},{"issue":"10","key":"3740_CR55","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1016\/j.tibtech.2016.02.014","volume":"34","author":"AH Smits","year":"2016","unstructured":"Smits AH, Vermeulen M (2016) Characterizing protein\u2013protein interactions using mass spectrometry: challenges and opportunities. Trends Biotechnol 34(10):825\u2013834","journal-title":"Trends Biotechnol"},{"issue":"10","key":"3740_CR56","doi-asserted-by":"crossref","first-page":"1700035","DOI":"10.1002\/pmic.201700035","volume":"18","author":"J Rothnagel","year":"2018","unstructured":"Rothnagel J, Menschaert G (2018) Short open reading frames and their encoded peptides. Proteomics 18(10):1700035","journal-title":"Proteomics"},{"key":"3740_CR57","doi-asserted-by":"crossref","first-page":"144","DOI":"10.3389\/fgene.2018.00144","volume":"9","author":"F Yeasmin","year":"2018","unstructured":"Yeasmin F, Yada T, Akimitsu N (2018) Micropeptides encoded in transcripts previously identified as long noncoding RNAs: a new chapter in transcriptomics and proteomics. Front Genet 9:144","journal-title":"Front Genet"},{"key":"3740_CR58","doi-asserted-by":"publisher","unstructured":"Fouzia Yeasmin NITT, Kenzui T, Takeshi K, Tetsushi Y, Nobuyoshi A Identification and analysis of short Open Reading Frames (sORFs) on LINC00493 that is initially annotated as noncoding RNAs in human cell. J Biochem. https:\/\/doi.org\/10.1093\/jb\/mvaa143","DOI":"10.1093\/jb\/mvaa143"},{"issue":"9","key":"3740_CR59","doi-asserted-by":"crossref","first-page":"815","DOI":"10.1080\/15384101.2017.1304735","volume":"16","author":"A Matsumoto","year":"2017","unstructured":"Matsumoto A, Clohessy JG, Pandolfi PP (2017) SPAR, a lncRNA encoded mTORC1 inhibitor. Cell Cycle 16(9):815","journal-title":"Cell Cycle"},{"issue":"D1","key":"3740_CR60","doi-asserted-by":"crossref","first-page":"D174","DOI":"10.1093\/nar\/gku1060","volume":"43","author":"P-J Volders","year":"2014","unstructured":"Volders P-J, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P (2014) An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Res 43(D1):D174\u2013D180","journal-title":"Nucleic Acids Res"},{"key":"3740_CR61","unstructured":"Verbruggen S (2015) Ribosome profiling, a useful tool in the search for micropeptides. https:\/\/lib.ugent.be\/catalog\/rug01:002216974"},{"issue":"7","key":"3740_CR62","doi-asserted-by":"crossref","first-page":"2508","DOI":"10.1021\/acs.jproteome.7b00085","volume":"16","author":"K Verheggen","year":"2017","unstructured":"Verheggen K, Volders P-J, Mestdagh P, Menschaert G, Van Damme P, Gevaert K, Martens L, Vandesompele J (2017) Noncoding after all: biases in proteomics data do not explain observed absence of lncRNA translation products. J Proteome Res 16(7):2508\u20132515","journal-title":"J Proteome Res"},{"issue":"12","key":"3740_CR63","doi-asserted-by":"crossref","first-page":"4031","DOI":"10.1021\/acs.jproteome.8b00441","volume":"17","author":"GS Omenn","year":"2018","unstructured":"Omenn GS, Lane L, Overall CM, Corrales FJ, Schwenk JM, Paik Y-K, Van Eyk JE, Liu S, Snyder M, Baker MS (2018) Progress on identifying and characterizing the human proteome: 2018 metrics from the HUPO human proteome project. J Proteome Res 17(12):4031\u20134041","journal-title":"J Proteome Res"},{"key":"3740_CR64","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1007\/978-3-319-42316-6_3","volume":"926","author":"R Barbieri","year":"2016","unstructured":"Barbieri R, Guryev V, Brandsma CA, Suits F, Bischoff R, Horvatovich P (2016) Proteogenomics: ey driver for clinical discovery and personalized medicine. Adv Exp Med Bio 926:21\u201347","journal-title":"Adv Exp Med Bio"},{"issue":"2","key":"3740_CR65","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1586\/14789450.2016.1132169","volume":"13","author":"M Locard-Paulet","year":"2016","unstructured":"Locard-Paulet M, Pible O, Gonzalez de Peredo A, Alpha-Bazin B, Almunia C, Burlet-Schiltz O, Armengaud J (2016) Clinical implications of recent advances in proteogenomics. Expert Re Proteom 13(2):185\u2013199","journal-title":"Expert Re Proteom"},{"key":"3740_CR66","doi-asserted-by":"publisher","DOI":"10.1101\/2020.04.10.036160","author":"T Huang","year":"2020","unstructured":"Huang T, Bamigbade AT, Xu S, Deng Y, Xie K, Ogunsade OO, Mirza AH, Wang J, Liu P, Zhang S (2020) Identification of a micropeptide on lipid droplet that mediates lipid storage and insulin sensitivity. bioRxiv. https:\/\/doi.org\/10.1101\/2020.04.10.036160","journal-title":"bioRxiv"},{"issue":"1","key":"3740_CR67","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1186\/s12864-018-4604-2","volume":"19","author":"AL Greninger","year":"2018","unstructured":"Greninger AL, Knudsen GM, Roychoudhury P, Hanson DJ, Sedlak RH, Xie H, Guan J, Nguyen T, Peddu V, Boeckh M (2018) Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6. BMC Genom 19(1):204","journal-title":"BMC Genom"},{"issue":"46","key":"3740_CR68","doi-asserted-by":"crossref","first-page":"E10018","DOI":"10.1073\/pnas.1708433114","volume":"114","author":"J Bazin","year":"2017","unstructured":"Bazin J, Baerenfaller K, Gosai SJ, Gregory BD, Crespi M, Bailey-Serres J (2017) Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation. Proc Natl Acad Sci 114(46):E10018\u2013E10027","journal-title":"Proc Natl Acad Sci"},{"issue":"12","key":"3740_CR69","doi-asserted-by":"crossref","first-page":"2083","DOI":"10.1101\/gr.218255.116","volume":"27","author":"U Omasits","year":"2017","unstructured":"Omasits U, Varadarajan AR, Schmid M, Goetze S, Melidis D, Bourqui M, Nikolayeva O, Qu\u00e9batte M, Patrignani A, Dehio C (2017) An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics. Genome Res 27(12):2083\u20132095","journal-title":"Genome Res"},{"issue":"10","key":"3740_CR70","doi-asserted-by":"crossref","first-page":"1800235","DOI":"10.1002\/pmic.201800235","volume":"19","author":"TY Low","year":"2019","unstructured":"Low TY, Mohtar MA, Ang MY, Jamal R (2019) Connecting proteomics to next-generation sequencing: proteogenomics and its current applications in biology. Proteomics 19(10):1800235","journal-title":"Proteomics"},{"issue":"10","key":"3740_CR71","doi-asserted-by":"crossref","first-page":"1700274","DOI":"10.1002\/pmic.201700274","volume":"18","author":"I Hollerer","year":"2018","unstructured":"Hollerer I, Higdon A, Brar GA (2018) Strategies and challenges in identifying function for thousands of sORF-encoded peptides in meiosis. Proteomics 18(10):1700274","journal-title":"Proteomics"},{"issue":"3","key":"3740_CR72","first-page":"1757","volume":"13","author":"BA Budnik","year":"2015","unstructured":"Budnik BA, Kellis M, Saghatelian A (2015) Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue. J Proteome Res 13(3):1757\u20131765","journal-title":"J Proteome Res"},{"issue":"2","key":"3740_CR73","doi-asserted-by":"crossref","first-page":"e8290","DOI":"10.15252\/msb.20188290","volume":"15","author":"S Miravet-Verde","year":"2019","unstructured":"Miravet-Verde S, Ferrar T, Espadas-Garc\u00eda G, Mazzolini R, Gharrab A, Sabido E, Serrano L, Lluch-Senar M (2019) Unraveling the hidden universe of small proteins in bacterial genomes. Mol Syst Biol 15(2):e8290","journal-title":"Mol Syst Biol"},{"issue":"9","key":"3740_CR74","doi-asserted-by":"crossref","first-page":"e0179112","DOI":"10.1371\/journal.pone.0179112","volume":"12","author":"IK Kirk","year":"2017","unstructured":"Kirk IK, Weinhold N, Brunak S, Belling K (2017) The impact of the protein interactome on the syntenic structure of mammalian genomes. PLoS ONE 12(9):e0179112","journal-title":"PLoS ONE"},{"issue":"1","key":"3740_CR75","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1186\/s13059-015-0742-x","volume":"16","author":"SD Mackowiak","year":"2015","unstructured":"Mackowiak SD, Zauber H, Bielow C, Thiel D, Kutz K, Calviello L, Mastrobuoni G, Rajewsky N, Kempa S, Selbach M (2015) Extensive identification and analysis of conserved small ORFs in animals. Genome Biol 16(1):179","journal-title":"Genome Biol"},{"issue":"10","key":"3740_CR76","doi-asserted-by":"crossref","first-page":"1700218","DOI":"10.1002\/pmic.201700218","volume":"18","author":"H Budamgunta","year":"2018","unstructured":"Budamgunta H, Olexiouk V, Luyten W, Schildermans K, Maes E, Boonen K, Menschaert G, Baggerman G (2018) Comprehensive peptide analysis of mouse brain striatum identifies novel sORF-encoded polypeptides. Proteomics 18(10):1700218","journal-title":"Proteomics"},{"issue":"11","key":"3740_CR77","doi-asserted-by":"crossref","first-page":"1051","DOI":"10.1080\/15476286.2016.1218589","volume":"13","author":"LE Cabrera-Quio","year":"2016","unstructured":"Cabrera-Quio LE, Herberg S, Pauli A (2016) Decoding sORF translation\u2013from small proteins to gene regulation. RNA Biol 13(11):1051\u20131059","journal-title":"RNA Biol"},{"issue":"2","key":"3740_CR78","doi-asserted-by":"crossref","first-page":"134","DOI":"10.3109\/10409238.2015.1016215","volume":"50","author":"Q Chu","year":"2015","unstructured":"Chu Q, Ma J, Saghatelian A (2015) Identification and characterization of sORF-encoded polypeptides. Crit Rev Biochem Mol Biol 50(2):134\u2013141","journal-title":"Crit Rev Biochem Mol Biol"},{"issue":"1","key":"3740_CR79","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1186\/s12859-016-1458-y","volume":"18","author":"RR Hazarika","year":"2017","unstructured":"Hazarika RR, De Coninck B, Yamamoto LR, Martin LR, Cammue BP, van Noort V (2017) ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsisthaliana. BMC Bioinform 18(1):37","journal-title":"BMC Bioinform"},{"issue":"1","key":"3740_CR80","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1186\/s12859-016-1458-y","volume":"18","author":"RR Hazarika","year":"2017","unstructured":"Hazarika RR, De Coninck B, Yamamoto LR, Martin LR, Cammue BP, van Noort V (2017) ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana. BMC Bioinform 18(1):37","journal-title":"BMC Bioinform"},{"key":"3740_CR81","volume-title":"Identifying and understanding processes driving genomic drift of f-box gene families during plant evolution","author":"A Surendrarao","year":"2016","unstructured":"Surendrarao A (2016) Identifying and understanding processes driving genomic drift of f-box gene families during plant evolution. University of California, Davis"},{"issue":"2","key":"3740_CR82","doi-asserted-by":"crossref","first-page":"174","DOI":"10.1038\/nchembio.2249","volume":"13","author":"NG D'Lima","year":"2017","unstructured":"D\u2019Lima NG, Ma J, Winkler L, Chu Q, Loh KH, Corpuz EO, Budnik BA, Lykke-Andersen J, Saghatelian A, Slavoff SA (2017) A human microprotein that interacts with the mRNA decapping complex. Nat Chem Biol 13(2):174","journal-title":"Nat Chem Biol"},{"issue":"1","key":"3740_CR83","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.yexcr.2017.10.010","volume":"361","author":"L-J Li","year":"2017","unstructured":"Li L-J, Leng R-X, Fan Y-G, Pan H-F, Ye D-Q (2017) Translation of noncoding RNAs: focus on lncRNAs, pri-miRNAs, and circRNAs. Exp Cell Res 361(1):1\u20138","journal-title":"Exp Cell Res"},{"key":"3740_CR84","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1016\/j.ceca.2018.05.005","volume":"72","author":"T Vervliet","year":"2018","unstructured":"Vervliet T, Robinson EL, Roderick HL (2018) Lnc\u2019ing Ca2+, SERCA and cardiac disease. Cell Calcium 72:132\u2013134","journal-title":"Cell Calcium"},{"issue":"5","key":"3740_CR85","doi-asserted-by":"crossref","first-page":"604","DOI":"10.1038\/cr.2017.35","volume":"27","author":"N Rion","year":"2017","unstructured":"Rion N, R\u00fcegg MA (2017) LncRNA-encoded peptides: more than translational noise? Cell Res 27(5):604","journal-title":"Cell Res"},{"issue":"1","key":"3740_CR86","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1002\/bies.201400103","volume":"37","author":"A Pauli","year":"2015","unstructured":"Pauli A, Valen E, Schier AF (2015) Identifying (non-) coding RNAs and small peptides: challenges and opportunities. BioEssays 37(1):103\u2013112","journal-title":"BioEssays"},{"issue":"6172","key":"3740_CR87","doi-asserted-by":"crossref","first-page":"1248636","DOI":"10.1126\/science.1248636","volume":"343","author":"A Pauli","year":"2014","unstructured":"Pauli A, Norris ML, Valen E, Chew G-L, Gagnon JA, Zimmerman S, Mitchell A, Ma J, Dubrulle J, Reyon D (2014) Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science 343(6172):1248636","journal-title":"Science"},{"issue":"3","key":"3740_CR88","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1186\/s12864-019-5538-z","volume":"20","author":"DO Konina","year":"2019","unstructured":"Konina DO, Filatova AY, Skoblov MY (2019) LINC01420 RNA structure and influence on cell physiology. BMC Genom 20(3):298","journal-title":"BMC Genom"},{"issue":"2","key":"3740_CR89","doi-asserted-by":"crossref","first-page":"380","DOI":"10.1093\/gbe\/evw307","volume":"9","author":"BM Robicheau","year":"2017","unstructured":"Robicheau BM, Susko E, Harrigan AM, Snyder M (2017) Ribosomal RNA genes contribute to the formation of pseudogenes and junk DNA in the human genome. Genome Biol Evol 9(2):380\u2013397","journal-title":"Genome Biol Evol"},{"issue":"12","key":"3740_CR90","doi-asserted-by":"crossref","first-page":"909","DOI":"10.1038\/nchembio.1964","volume":"11","author":"A Saghatelian","year":"2015","unstructured":"Saghatelian A, Couso JP (2015) Discovery and characterization of smORF-encoded bioactive polypeptides. Nat Chem Biol 11(12):909","journal-title":"Nat Chem Biol"},{"issue":"4","key":"3740_CR91","doi-asserted-by":"crossref","first-page":"e0215394","DOI":"10.1371\/journal.pone.0215394","volume":"14","author":"R Kaul","year":"2019","unstructured":"Kaul R, Purushothaman P, Uppal T, Verma SC (2019) KSHV lytic proteins K-RTA and K8 bind to cellular and viral chromatin to modulate gene expression. PLoS ONE 14(4):e0215394","journal-title":"PLoS ONE"},{"issue":"12","key":"3740_CR92","doi-asserted-by":"crossref","first-page":"e78","DOI":"10.1093\/nar\/gkv227","volume":"43","author":"S Tang","year":"2015","unstructured":"Tang S, Lomsadze A, Borodovsky M (2015) Identification of protein coding regions in RNA transcripts. Nucleic Acids Res 43(12):e78\u2013e78","journal-title":"Nucleic Acids Res"},{"issue":"5","key":"3740_CR93","doi-asserted-by":"crossref","first-page":"e0154567","DOI":"10.1371\/journal.pone.0154567","volume":"11","author":"C Pian","year":"2016","unstructured":"Pian C, Zhang G, Chen Z, Chen Y, Zhang J, Yang T, Zhang L (2016) LncRNApred: Classification of long non-coding RNAs and protein-coding transcripts by the ensemble algorithm with a new hybrid feature. PLoS Onse 11(5):e0154567","journal-title":"PLoS Onse"},{"key":"3740_CR94","unstructured":"Combier J-P, Laures-sergues D, Becard G (2017) Use of micropeptides for promoting plant growth (ed). Google Patents"},{"key":"3740_CR95","unstructured":"Combier J-P, Laures-sergues D, Becard G (2017) Use of micropeptides in order to stimulate mycorrhizal symbiosis (eds). Google Patents"},{"issue":"9","key":"3740_CR96","doi-asserted-by":"crossref","first-page":"1233","DOI":"10.1101\/gr.199547.115","volume":"26","author":"K Wen","year":"2016","unstructured":"Wen K, Yang L, Xiong T, Di C, Ma D, Wu M, Xue Z, Zhang X, Long L, Zhang W (2016) Critical roles of long noncoding RNAs in Drosophilaspermatogenesis. Genome Res 26(9):1233\u20131244","journal-title":"Genome Res"},{"issue":"16","key":"3740_CR97","doi-asserted-by":"crossref","first-page":"6841","DOI":"10.1007\/s00253-018-9159-2","volume":"102","author":"M Zhu","year":"2018","unstructured":"Zhu M, Hu X, Cao G, Xue R, Gong C (2018) Functions and impact of tal-like genes in animals with regard to applied aspects. Appl Microbiol Biotechnol 102(16):6841\u20136845","journal-title":"Appl Microbiol Biotechnol"},{"issue":"18","key":"3740_CR98","doi-asserted-by":"crossref","first-page":"4646","DOI":"10.3390\/ijms20184646","volume":"20","author":"K Li","year":"2019","unstructured":"Li K, Tian Y, Yuan Y, Fan X, Yang M, He Z, Yang D (2019) Insights into the functions of LncRNAs in Drosophila. Int J Mol Sci 20(18):4646","journal-title":"Int J Mol Sci"},{"key":"3740_CR99","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1016\/j.neures.2019.02.006","volume":"151","author":"R Tharakan","year":"2020","unstructured":"Tharakan R, Kreimer S, Ubaida-Mohien C, Lavoie J, Olexiouk V, Menschaert G, Ingolia NT, Cole RN, Ishizuka K, Sawa A, Nucifora LG (2020) A methodology for discovering novel brain-relevant peptides: combination of ribosome profiling and peptidomics. Neurosci Res 151:31\u201337. https:\/\/doi.org\/10.1016\/j.neures.2019.02.006","journal-title":"Neurosci Res"},{"issue":"10","key":"3740_CR100","doi-asserted-by":"crossref","first-page":"5185","DOI":"10.1074\/jbc.M115.705012","volume":"291","author":"S Kang","year":"2016","unstructured":"Kang S, Dahl R, Hsieh W, Shin A, Zsebo KM, Buettner C, Hajjar RJ, Lebeche D (2016) Small molecular allosteric activator of the sarco\/endoplasmic reticulum Ca2+-ATPase (SERCA) attenuates diabetes and metabolic disorders. J Biol Chem 291(10):5185\u20135198","journal-title":"J Biol Chem"},{"key":"3740_CR101","doi-asserted-by":"crossref","first-page":"4429","DOI":"10.1016\/j.jmb.2019.07.037","volume":"431","author":"DR Singh","year":"2019","unstructured":"Singh DR, Dalton MP, Cho EE, Pribadi MP, Zak TJ, \u0160eflov\u00e1 J, Makarewich CA, Olson EN, Robia SL (2019) Newly discovered micropeptide regulators of SERCA form oligomers but bind to the pump as monomers. J Mol Biol 431:4429\u20134443","journal-title":"J Mol Biol"},{"issue":"supp_1","key":"3740_CR102","first-page":"A189","volume":"117","author":"BR Nelson","year":"2015","unstructured":"Nelson BR, Makarewich CA, Reese AL, Winders BR, Anderson DM, McAnally JR, Kavalali ET, Bassel-Duby R, Olson EN (2015) DWORF: discovery and characterization of a cardiac micropeptide encoded in a putative long noncoding RNA. Circ Res 117(supp_1):A189\u2013A189","journal-title":"Circ Res"},{"issue":"6335","key":"3740_CR103","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1126\/science.aam9361","volume":"356","author":"P Bi","year":"2017","unstructured":"Bi P, Ramirez-Martinez A, Li H, Cannavino J, McAnally JR, Shelton JM, S\u00e1nchez-Ortiz E, Bassel-Duby R, Olson EN (2017) Control of muscle formation by the fusogenic micropeptide myomixer. Science 356(6335):323\u2013327","journal-title":"Science"},{"issue":"16","key":"3740_CR104","doi-asserted-by":"crossref","first-page":"10950","DOI":"10.1074\/jbc.C113.533968","volume":"289","author":"SA Slavoff","year":"2014","unstructured":"Slavoff SA, Heo J, Budnik BA, Hanakahi LA, Saghatelian A (2014) A human short open reading frame (sORF)-encoded polypeptide that stimulates DNA end joining. J Biol Chem 289(16):10950\u201310957","journal-title":"J Biol Chem"},{"key":"3740_CR105","doi-asserted-by":"publisher","unstructured":"D\u2019Alessandro G, di Fagagna FdA (2018) Long non-coding RNA in the control of genome stability and cancer phenotypes. Non-coding RNA Investig 2(3). https:\/\/doi.org\/10.21037\/ncri.2018.03.01","DOI":"10.21037\/ncri.2018.03.01"},{"issue":"2","key":"3740_CR106","doi-asserted-by":"crossref","first-page":"332","DOI":"10.1016\/j.molcel.2018.06.018","volume":"71","author":"PJ Hung","year":"2018","unstructured":"Hung PJ, Johnson B, Chen B-R, Byrum AK, Bredemeyer AL, Yewdell WT, Johnson TE, Lee BJ, Deivasigamani S, Hindi I (2018) MRI is a DNA damage response adaptor during classical non-homologous end joining. Mol Cell 71(2):332-342.e338","journal-title":"Mol Cell"},{"key":"3740_CR107","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1016\/j.lfs.2018.09.022","volume":"211","author":"Z-M Xu","year":"2018","unstructured":"Xu Z-M, Huang F, Huang W-Q (2018) Angiogenic lncRNAs: a potential therapeutic target for ischaemic heart disease. Life Sci 211:157\u2013171","journal-title":"Life Sci"},{"issue":"4","key":"3740_CR108","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1016\/j.jiph.2016.08.007","volume":"10","author":"M Frieri","year":"2017","unstructured":"Frieri M, Kumar K, Boutin A (2017) Antibiotic resistance. J Infect Public Health 10(4):369\u2013378","journal-title":"J Infect Public Health"},{"issue":"5","key":"3740_CR109","doi-asserted-by":"crossref","first-page":"416","DOI":"10.1016\/j.cmi.2015.12.002","volume":"22","author":"ND Friedman","year":"2016","unstructured":"Friedman ND, Temkin E, Carmeli Y (2016) The negative impact of antibiotic resistance. Clin Microbiol Infect 22(5):416\u2013422","journal-title":"Clin Microbiol Infect"},{"issue":"9","key":"3740_CR110","doi-asserted-by":"crossref","first-page":"3889","DOI":"10.1021\/acs.jmedchem.7b01729","volume":"61","author":"J Wang","year":"2018","unstructured":"Wang J, Chou S, Yang Z, Yang Y, Wang Z, Song J, Dou X, Shan A (2018) Combating drug-resistant fungi with novel imperfectly amphipathic palindromic peptides. J Med Chem 61(9):3889\u20133907","journal-title":"J Med Chem"},{"issue":"4","key":"3740_CR111","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1080\/08927014.2015.1048238","volume":"31","author":"R Trepos","year":"2015","unstructured":"Trepos R, Cervin G, Pile C, Pavia H, Hellio C, Svenson J (2015) Evaluation of cationic micropeptides derived from the innate immune system as inhibitors of marine biofouling. Biofouling 31(4):393\u2013403","journal-title":"Biofouling"},{"issue":"12","key":"3740_CR112","doi-asserted-by":"crossref","first-page":"3391","DOI":"10.1021\/acschembio.6b00843","volume":"11","author":"CG Starr","year":"2016","unstructured":"Starr CG, He J, Wimley WC (2016) Host cell interactions are a significant barrier to the clinical utility of peptide antibiotics. ACS Chem Biol 11(12):3391\u20133399","journal-title":"ACS Chem Biol"},{"issue":"1","key":"3740_CR113","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1186\/s12866-015-0473-x","volume":"15","author":"S S\u00e1nchez-G\u00f3mez","year":"2015","unstructured":"S\u00e1nchez-G\u00f3mez S, Ferrer-Espada R, Stewart PS, Pitts B, Lohner K, de Tejada GM (2015) Antimicrobial activity of synthetic cationic peptides and lipopeptides derived from human lactoferricin against Pseudomonasaeruginosa planktonic cultures and biofilms. BMC Microbiol 15(1):137","journal-title":"BMC Microbiol"},{"issue":"14","key":"3740_CR114","doi-asserted-by":"crossref","first-page":"1785","DOI":"10.2174\/1381612821666150304161201","volume":"21","author":"M Tabish Rehman","year":"2015","unstructured":"Tabish Rehman M, U Khan A (2015) Understanding the interaction between human serum albumin and anti-bacterial\/anti-cancer compounds. Curr Pharm Des 21(14):1785\u20131799","journal-title":"Curr Pharm Des"},{"issue":"3","key":"3740_CR115","doi-asserted-by":"crossref","first-page":"749","DOI":"10.1021\/acs.accounts.8b00624","volume":"52","author":"JSM Svendsen","year":"2019","unstructured":"Svendsen JSM, Grant TM, Rennison D, Brimble MA, Svenson J (2019) Very short and stable lactoferricin-derived antimicrobial peptides: design principles and potential uses. Acc Chem Res 52(3):749\u2013759","journal-title":"Acc Chem Res"},{"issue":"2","key":"3740_CR116","doi-asserted-by":"crossref","first-page":"025403","DOI":"10.1088\/2053-1591\/aaed72","volume":"6","author":"L Le","year":"2018","unstructured":"Le L, Bokare A, Erogbogbo F (2018) Hand powered, cost effective, 3D printed nanoparticle synthesizer: effects of polymer end caps, drugs, and solvents on lipid polymer hybrid nanoparticles. Mater Res Express 6(2):025403","journal-title":"Mater Res Express"},{"issue":"6","key":"3740_CR117","doi-asserted-by":"crossref","first-page":"759","DOI":"10.4014\/jmb.1411.11058","volume":"25","author":"J Lee","year":"2015","unstructured":"Lee J, Lee DG (2015) Antimicrobial peptides (AMPs) with dual mechanisms: membrane disruption and apoptosis. J Microbiol Biotechnol 25(6):759\u2013764","journal-title":"J Microbiol Biotechnol"},{"issue":"2","key":"3740_CR118","doi-asserted-by":"crossref","first-page":"497","DOI":"10.1016\/j.bbrc.2019.04.153","volume":"514","author":"J-Y Sim","year":"2019","unstructured":"Sim J-Y, Kim S, Lee J, Lim H, Kim HH, Park Z-Y, Kim JI (2019) A significantly enhanced antibacterial spectrum of D-enantiomeric lipopeptide bactenecin. Biochem Biophys Res Commun 514(2):497\u2013502","journal-title":"Biochem Biophys Res Commun"},{"issue":"9","key":"3740_CR119","doi-asserted-by":"crossref","first-page":"3013","DOI":"10.1021\/acs.molpharmaceut.7b00217","volume":"14","author":"W Pang","year":"2017","unstructured":"Pang W, Lv J, Du S, Wang J, Wang J, Zeng Y (2017) Preparation of curcumin-piperazine coamorphous phase and fluorescence spectroscopic and density functional theory simulation studies on the interaction with bovine serum albumin. Mol Pharm 14(9):3013\u20133024","journal-title":"Mol Pharm"},{"key":"3740_CR120","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1016\/j.msec.2018.07.064","volume":"93","author":"GB De Freitas","year":"2018","unstructured":"De Freitas GB, De Almeida DJ, Carraro E, Kerppers II, Martins GA, Mainardes RM, Khalil NM, Messias-Reason IJ (2018) Formulation, characterization, and in vitro\/in vivo studies of capsaicin-loaded albumin nanoparticles. Mater Sci Eng C 93:70\u201379","journal-title":"Mater Sci Eng C"},{"issue":"68","key":"3740_CR121","doi-asserted-by":"crossref","first-page":"63463","DOI":"10.1039\/C6RA08063D","volume":"6","author":"MB Bolattin","year":"2016","unstructured":"Bolattin MB, Nandibewoor ST, Joshi SD, Dixit SR, Chimatadar SA (2016) Interaction between carisoprodol and bovine serum albumin and effect of \u03b2-cyclodextrin on binding: insights from molecular docking and spectroscopic techniques. RSC Adv 6(68):63463\u201363471","journal-title":"RSC Adv"},{"key":"3740_CR122","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.abb.2015.02.034","volume":"573","author":"C-Y Tsai","year":"2015","unstructured":"Tsai C-Y, Chen Y-J, Fu Y-S, Chang L-S (2015) Antibacterial and membrane-damaging activities of mannosylated bovine serum albumin. Arch Biochem Biophys 573:14\u201322","journal-title":"Arch Biochem Biophys"},{"issue":"3","key":"3740_CR123","doi-asserted-by":"crossref","first-page":"246","DOI":"10.1080\/10409238.2018.1447543","volume":"53","author":"F Iavarone","year":"2018","unstructured":"Iavarone F, Desiderio C, Vitali A, Messana I, Martelli C, Castagnola M, Cabras T (2018) Cryptides: latent peptides everywhere. Crit Rev Biochem Mol Biol 53(3):246\u2013263","journal-title":"Crit Rev Biochem Mol Biol"},{"key":"3740_CR124","doi-asserted-by":"crossref","first-page":"8330","DOI":"10.1038\/ncomms9330","volume":"6","author":"W Li","year":"2015","unstructured":"Li W, Cui T, Hu L, Wang Z, Li Z, He Z-G (2015) Cyclic diguanylate monophosphate directly binds to human siderocalin and inhibits its antibacterial activity. Nat Commun 6:8330","journal-title":"Nat Commun"},{"issue":"4","key":"3740_CR125","doi-asserted-by":"crossref","first-page":"895","DOI":"10.1042\/BST20160428","volume":"45","author":"OM Rogoyski","year":"2017","unstructured":"Rogoyski OM, Pueyo JI, Couso JP, Newbury SF (2017) Functions of long non-coding RNAs in human disease and their conservation in Drosophila development. Biochem Soc Trans 45(4):895\u2013904","journal-title":"Biochem Soc Trans"},{"key":"3740_CR126","doi-asserted-by":"publisher","first-page":"371","DOI":"10.1017\/9781316756300.026","volume-title":"Genome editing and engineering: from TALENs, ZFNs and CRISPRs to molecular surgery","author":"S Haemmig","year":"2018","unstructured":"Haemmig S, Feinberg M (2018) Manipulation of long non-coding RNAs in cardiovascular disease using genome editing technology. In: Church G, Appasani K  (ed) Genome editing and engineering: from TALENs, ZFNs and CRISPRs to molecular surgery. Cambridge University Press, Cambridge, pp 371\u2013388. https:\/\/doi.org\/10.1017\/9781316756300.026"},{"issue":"9","key":"3740_CR127","doi-asserted-by":"crossref","first-page":"4677","DOI":"10.1093\/nar\/gky264","volume":"46","author":"T Kato-Inui","year":"2018","unstructured":"Kato-Inui T, Takahashi G, Hsu S, Miyaoka Y (2018) Clustered regularly interspaced short palindromic repeats (CRISPR)\/CRISPR-associated protein 9 with improved proof-reading enhances homology-directed repair. Nucleic Acids Res 46(9):4677\u20134688","journal-title":"Nucleic Acids Res"},{"issue":"10","key":"3740_CR128","doi-asserted-by":"crossref","first-page":"1456","DOI":"10.1101\/gr.191122.115","volume":"25","author":"LA Goff","year":"2015","unstructured":"Goff LA, Rinn JL (2015) Linking RNA biology to lncRNAs. Genome Res 25(10):1456\u20131465","journal-title":"Genome Res"},{"key":"3740_CR129","unstructured":"Olson E, Millay DP (2019) Compositions and methods relating to myomaker-induced muscle cell fusion (eds). Google Patents"},{"key":"3740_CR130","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/j.biochi.2015.03.014","volume":"117","author":"AC Mallory","year":"2015","unstructured":"Mallory AC, Shkumatava A (2015) LncRNAs in vertebrates: advances and challenges. Biochimie 117:3\u201314","journal-title":"Biochimie"},{"key":"3740_CR131","unstructured":"Linse KD, Castro J What are micro peptides? https:\/\/blog-biosyn.com\/2013\/05\/07\/what-are-micro-peptides\/"},{"issue":"3","key":"3740_CR132","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1038\/nrm.2017.104","volume":"19","author":"JD Ransohoff","year":"2018","unstructured":"Ransohoff JD, Wei Y, Khavari PA (2018) The functions and unique features of long intergenic non-coding RNA. Nat Rev Mol Cell Biol 19(3):143","journal-title":"Nat Rev Mol Cell Biol"},{"issue":"4","key":"3740_CR133","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1038\/nsmb.3381","volume":"24","author":"P Pymm","year":"2017","unstructured":"Pymm P, Illing PT, Ramarathinam SH, O\u2019Connor GM, Hughes VA, Hitchen C, Price DA, Ho BK, McVicar DW, Brooks AG (2017) MHC-I peptides get out of the groove and enable a novel mechanism of HIV-1 escape. Nat Struct Mol Biol 24(4):387","journal-title":"Nat Struct Mol Biol"},{"issue":"5","key":"3740_CR134","doi-asserted-by":"crossref","first-page":"792","DOI":"10.1016\/j.immuni.2015.05.004","volume":"42","author":"AT Satpathy","year":"2015","unstructured":"Satpathy AT, Chang HY (2015) Long noncoding RNA in hematopoiesis and immunity. Immunity 42(5):792\u2013804","journal-title":"Immunity"},{"key":"3740_CR135","doi-asserted-by":"publisher","unstructured":"Ray S, Rosenberg MI, Chanut-Delalande H, Decaras A, Schwertner B, Toubiana W, Auman T, Schnellhammer I, Teuscher M, Khila A (2018) Millepattes micropeptides are an ancient developmental switch required for embryonic patterning. BioRxiv 376111. https:\/\/doi.org\/10.1101\/376111","DOI":"10.1101\/376111"},{"issue":"3","key":"3740_CR136","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1021\/acssensors.9b00026","volume":"4","author":"R Zhan","year":"2019","unstructured":"Zhan R, Li X, Guo W, Liu X, Liu Z, Xu K, Tang B (2019) An Aptamer-based near-infrared fluorescence nanoprobe for detecting and imaging of phospholamban micropeptide in cardiomyocytes. ACS Sens 4(3):733\u2013739","journal-title":"ACS Sens"},{"key":"3740_CR137","doi-asserted-by":"crossref","first-page":"44048","DOI":"10.1038\/srep44048","volume":"7","author":"J Zhang","year":"2017","unstructured":"Zhang J, Naik HS, Assefa T, Sarkar S, Reddy RC, Singh A, Ganapathysubramanian B, Singh AK (2017) Computer vision and machine learning for robust phenotyping in genome-wide studies. Sci Rep 7:44048","journal-title":"Sci Rep"},{"key":"3740_CR138","doi-asserted-by":"crossref","first-page":"517","DOI":"10.3389\/fendo.2019.00517","volume":"10","author":"B Sahu","year":"2019","unstructured":"Sahu B, Pani S, Swalsingh G, Bal NC (2019) Epigenetic mechanisms in regulation of adaptive thermogenesis in skeletal muscle. Front Endocrinol 10:517","journal-title":"Front Endocrinol"},{"issue":"1","key":"3740_CR139","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1038\/nrg.2016.118","volume":"18","author":"BE Housden","year":"2017","unstructured":"Housden BE, Muhar M, Gemberling M, Gersbach CA, Stainier DY, Seydoux G, Mohr SE, Zuber J, Perrimon N (2017) Loss-of-function genetic tools for animal models: cross-species and cross-platform differences. Nat Rev Genet 18(1):24","journal-title":"Nat Rev Genet"},{"issue":"3","key":"3740_CR140","doi-asserted-by":"crossref","first-page":"284a","DOI":"10.1016\/j.bpj.2018.11.1535","volume":"116","author":"C Gilmore","year":"2019","unstructured":"Gilmore C, Somasundaram V, Scheiblin D, Heinz W, Lockett S, Wink D (2019) Restricting diffusive exchange in vitro demonstrates inos modulates hypoxic gradients in the tumor microenvironment. Biophys J 116(3):284a","journal-title":"Biophys J"},{"key":"3740_CR141","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/j.trac.2018.02.005","volume":"102","author":"Z Niu","year":"2018","unstructured":"Niu Z, Zhang W, Yu C, Zhang J, Wen Y (2018) Recent advances in biological sample preparation methods coupled with chromatography, spectrometry and electrochemistry analysis techniques. TrAC Trends Anal Chem 102:123\u2013146","journal-title":"TrAC Trends Anal Chem"},{"issue":"5","key":"3740_CR142","doi-asserted-by":"crossref","first-page":"801","DOI":"10.1007\/s13361-018-1939-5","volume":"29","author":"L Li","year":"2018","unstructured":"Li L, Andr\u00e9n PE, Sweedler JV (2018) Editorial and review: 29th ASMS sanibel conference on mass spectrometry\u2014peptidomics: bridging the gap between proteomics and metabolomics by MS. J Am Soc Mass Spectrom 29(5):801\u2013806","journal-title":"J Am Soc Mass Spectrom"},{"key":"3740_CR143","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1007\/978-1-4939-7537-2_8","volume":"1719","author":"L Fricker","year":"2018","unstructured":"Fricker L (2018) Quantitative peptidomics: general considerations. Methods Mol Biol 1719:121\u2013140. https:\/\/doi.org\/10.1007\/978-1-4939-7537-2_8","journal-title":"Methods Mol Biol"},{"issue":"7","key":"3740_CR144","doi-asserted-by":"publisher","first-page":"953","DOI":"10.1007\/s11427-020-1702-x","volume":"63","author":"H Zhang","year":"2020","unstructured":"Zhang H, Ji X, Li P, Liu C, Lou J, Wang Z, Wen W, Xiao Y, Zhang M, Zhu X (2020) Liquid-liquid phase separation in biology: mechanisms, physiological functions and human diseases. Sci China Life Sci 63(7):953\u2013985. https:\/\/doi.org\/10.1007\/s11427-020-1702-x","journal-title":"Sci China Life Sci"},{"issue":"3","key":"3740_CR145","doi-asserted-by":"publisher","first-page":"419","DOI":"10.1016\/j.cell.2018.12.035","volume":"176","author":"S Alberti","year":"2019","unstructured":"Alberti S, Gladfelter A, Mittag T (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell 176(3):419\u2013434. https:\/\/doi.org\/10.1016\/j.cell.2018.12.035","journal-title":"Cell"},{"issue":"5","key":"3740_CR146","doi-asserted-by":"publisher","first-page":"936","DOI":"10.1016\/j.molcel.2015.01.013","volume":"57","author":"TJ Nott","year":"2015","unstructured":"Nott TJ, Petsalaki E, Farber P, Jervis D, Fussner E, Plochowietz A, Craggs TD, Bazett-Jones DP, Pawson T, Forman-Kay JD, Baldwin AJ (2015) Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles. Mol Cell 57(5):936\u2013947. https:\/\/doi.org\/10.1016\/j.molcel.2015.01.013","journal-title":"Mol Cell"},{"issue":"3","key":"3740_CR147","doi-asserted-by":"publisher","first-page":"688","DOI":"10.1016\/j.cell.2018.06.006","volume":"174","author":"J Wang","year":"2018","unstructured":"Wang J, Choi J-M, Holehouse AS, Lee HO, Zhang X, Jahnel M, Maharana S, Lemaitre R, Pozniakovsky A, Drechsel D, Poser I, Pappu RV, Alberti S, Hyman AA (2018) A molecular grammar governing the driving forces for phase separation of prion-like RNA binding proteins. Cell 174(3):688-699.e616. https:\/\/doi.org\/10.1016\/j.cell.2018.06.006","journal-title":"Cell"},{"issue":"9","key":"3740_CR148","doi-asserted-by":"crossref","first-page":"e0163312","DOI":"10.1371\/journal.pone.0163312","volume":"11","author":"S Dasgupta","year":"2016","unstructured":"Dasgupta S, Yang C, Castro LM, Tashima AK, Ferro ES, Moir RD, Willis IM, Fricker LD (2016) Analysis of the yeast peptidome and comparison with the human peptidome. PLoS ONE 11(9):e0163312","journal-title":"PLoS ONE"},{"key":"3740_CR149","first-page":"100599","volume":"31","author":"A Zelanis","year":"2019","unstructured":"Zelanis A, Silva DA, Kitano ES, Liberato T, Fukushima I, Serrano SM, Tashima AK (2019) A first step towards building spectral libraries as complementary tools for snake venom proteome\/peptidome studies. Comp Biochem Physiol Part D Genom Proteom 31:100599","journal-title":"Comp Biochem Physiol Part D Genom Proteom"},{"key":"3740_CR150","doi-asserted-by":"publisher","first-page":"515","DOI":"10.1016\/bs.vh.2018.01.020","volume":"107","author":"T Liu","year":"2018","unstructured":"Liu T, Rodland KD, Smith RD (2018) Characterization of the ovarian tumor peptidome. Vitam Horm 107:515\u2013531. https:\/\/doi.org\/10.1016\/bs.vh.2018.01.020","journal-title":"Vitam Horm"},{"key":"3740_CR151","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.jprot.2015.01.020","volume":"119","author":"S Piovesana","year":"2015","unstructured":"Piovesana S, Capriotti AL, Cavaliere C, La Barbera G, Samperi R, Chiozzi RZ, Lagan\u00e0 A (2015) Peptidome characterization and bioactivity analysis of donkey milk. J Proteom 119:21\u201329","journal-title":"J Proteom"},{"issue":"1_supplement","key":"3740_CR152","first-page":"714.711","volume":"33","author":"H Cao","year":"2019","unstructured":"Cao H, Shao F, Li M, Sweat M, Qian Q, Guo Y, Amendt B, Yang L (2019) Comprehensive identification of micropeptides encoded by long noncoding RNAs in human tissues. FASEB J 33(1_supplement):714.711-714.711","journal-title":"FASEB J"},{"key":"3740_CR153","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1186\/1471-2105-15-36","volume":"15","author":"A Skarshewski","year":"2014","unstructured":"Skarshewski A, Stanton-Cook M, Huber T, Al Mansoori S, Smith R, Beatson SA, Rothnagel JA (2014) uPEPperoni: an online tool for upstream open reading frame location and analysis of transcript conservation. BMC Bioinform 15:36. https:\/\/doi.org\/10.1186\/1471-2105-15-36","journal-title":"BMC Bioinform"},{"issue":"13","key":"3740_CR154","doi-asserted-by":"publisher","first-page":"i275","DOI":"10.1093\/bioinformatics\/btr209","volume":"27","author":"MF Lin","year":"2011","unstructured":"Lin MF, Jungreis I, Kellis M (2011) PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions. Bioinformatics (Oxf Engl) 27(13):i275\u2013i282. https:\/\/doi.org\/10.1093\/bioinformatics\/btr209","journal-title":"Bioinformatics (Oxf Engl)"},{"issue":"3","key":"3740_CR155","doi-asserted-by":"publisher","first-page":"399","DOI":"10.1093\/bioinformatics\/btp688","volume":"26","author":"K Hanada","year":"2010","unstructured":"Hanada K, Akiyama K, Sakurai T, Toyoda T, Shinozaki K, Shiu SH (2010) sORF finder: a program package to identify small open reading frames with high coding potential. Bioinformatics (Oxf Engl) 26(3):399\u2013400. https:\/\/doi.org\/10.1093\/bioinformatics\/btp688","journal-title":"Bioinformatics (Oxf Engl)"},{"key":"3740_CR156","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa608","author":"CS Casimiro-Soriguer","year":"2020","unstructured":"Casimiro-Soriguer CS, Rigual MM, Brokate-Llanos AM, Mu\u00f1oz MJ, Garz\u00f3n A, P\u00e9rez-Pulido AJ, Jimenez J (2020) Using AnABlast for intergenic sORF prediction in the C.elegans genome. Bioinformatics (Oxf Engl). https:\/\/doi.org\/10.1093\/bioinformatics\/btaa608","journal-title":"Bioinformatics (Oxf Engl)"},{"issue":"1","key":"3740_CR157","doi-asserted-by":"publisher","first-page":"e2","DOI":"10.1093\/nar\/gkw798","volume":"45","author":"L Hu","year":"2017","unstructured":"Hu L, Xu Z, Hu B, Lu ZJ (2017) COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features. Nucleic Acids Res 45(1):e2\u2013e2. https:\/\/doi.org\/10.1093\/nar\/gkw798","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"3740_CR158","doi-asserted-by":"publisher","first-page":"648","DOI":"10.1186\/1471-2164-14-648","volume":"14","author":"J Crapp\u00e9","year":"2013","unstructured":"Crapp\u00e9 J, Van Criekinge W, Trooskens G, Hayakawa E, Luyten W, Baggerman G, Menschaert G (2013) Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs. BMC Genom 14(1):648. https:\/\/doi.org\/10.1186\/1471-2164-14-648","journal-title":"BMC Genom"},{"issue":"4","key":"3740_CR159","doi-asserted-by":"publisher","first-page":"789","DOI":"10.1016\/j.cell.2011.10.002","volume":"147","author":"NT Ingolia","year":"2011","unstructured":"Ingolia NT, Lareau LF, Weissman JS (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147(4):789\u2013802. https:\/\/doi.org\/10.1016\/j.cell.2011.10.002","journal-title":"Cell"},{"issue":"3","key":"3740_CR160","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1038\/nrg3645","volume":"15","author":"NT Ingolia","year":"2014","unstructured":"Ingolia NT (2014) Ribosome profiling: new views of translation, from single codons to genome scale. Nat Rev Genet 15(3):205\u2013213. https:\/\/doi.org\/10.1038\/nrg3645","journal-title":"Nat Rev Genet"},{"issue":"5","key":"3740_CR161","doi-asserted-by":"publisher","first-page":"816","DOI":"10.1016\/j.molcel.2015.11.013","volume":"60","author":"AP Fields","year":"2015","unstructured":"Fields AP, Rodriguez EH, Jovanovic M, Stern-Ginossar N, Haas BJ, Mertins P, Raychowdhury R, Hacohen N, Carr SA, Ingolia NT, Regev A, Weissman JS (2015) A regression-based analysis of ribosome-profiling data reveals a conserved complexity to mammalian translation. Mol Cell 60(5):816\u2013827. https:\/\/doi.org\/10.1016\/j.molcel.2015.11.013","journal-title":"Mol Cell"},{"issue":"2","key":"3740_CR162","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1038\/nmeth.3688","volume":"13","author":"L Calviello","year":"2016","unstructured":"Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M, Landthaler M, Obermayer B, Ohler U (2016) Detecting actively translated open reading frames in ribosome profiling data. Nat Methods 13(2):165\u2013170. https:\/\/doi.org\/10.1038\/nmeth.3688","journal-title":"Nat Methods"}],"container-title":["Cellular and Molecular Life Sciences"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00018-020-03740-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00018-020-03740-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00018-020-03740-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,4,11]],"date-time":"2021-04-11T07:17:23Z","timestamp":1618125443000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00018-020-03740-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,1,28]]},"references-count":162,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2021,4]]}},"alternative-id":["3740"],"URL":"https:\/\/doi.org\/10.1007\/s00018-020-03740-3","relation":{},"ISSN":["1420-682X","1420-9071"],"issn-type":[{"value":"1420-682X","type":"print"},{"value":"1420-9071","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,1,28]]},"assertion":[{"value":"10 August 2020","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 December 2020","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 December 2020","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 January 2021","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}