{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T23:30:13Z","timestamp":1777505413900,"version":"3.51.4"},"reference-count":45,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2007,8,4]],"date-time":"2007-08-04T00:00:00Z","timestamp":1186185600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2008,1]]},"DOI":"10.1007\/s00248-007-9256-8","type":"journal-article","created":{"date-parts":[[2007,8,2]],"date-time":"2007-08-02T23:23:24Z","timestamp":1186097004000},"page":"107-118","source":"Crossref","is-referenced-by-count":26,"title":["Aerobic and Anoxic Growth and Nitrate Removal Capacity of a Marine Denitrifying Bacterium Isolated from a Recirculation Aquaculture System"],"prefix":"10.1007","volume":"55","author":[{"given":"Maria-Teresa","family":"Borges","sequence":"first","affiliation":[]},{"given":"Andr\u00e9","family":"Sousa","sequence":"additional","affiliation":[]},{"given":"Paolo","family":"De Marco","sequence":"additional","affiliation":[]},{"given":"Ana","family":"Matos","sequence":"additional","affiliation":[]},{"given":"Petra","family":"H\u00f6nigov\u00e1","sequence":"additional","affiliation":[]},{"given":"Paula M. L.","family":"Castro","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2007,8,4]]},"reference":[{"key":"9256_CR1","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/0044-8486(94)00385-2","volume":"133","author":"Y Aboutboul","year":"1995","unstructured":"Aboutboul, Y, Arviv, R, van Rijn, J (1995) Anaerobic treatment of intensive fish culture effluents: volatile fatty acid mediated denitrification. Aquaculture 133: 21\u201332","journal-title":"Aquaculture"},{"key":"9256_CR2","first-page":"439","volume-title":"Manuel des Analyses Chimiques en Milieu Marin","author":"A Aminot","year":"1983","unstructured":"Aminot, A, Chaussepied, M (1983) Manuel des Analyses Chimiques en Milieu Marin. CNEXO, Brest, 439 p"},{"key":"9256_CR3","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1016\/S0923-2508(01)01223-2","volume":"152","author":"N Ba\u00efda","year":"2001","unstructured":"Ba\u00efda, N, Yazourh, A, Singer, E, Izard, D (2001) Pseudomonas brenneri sp. nov., a new species isolated from natural mineral waters. Res Microbiol 152: 493\u2013502","journal-title":"Res Microbiol"},{"key":"9256_CR4","doi-asserted-by":"crossref","first-page":"211","DOI":"10.1023\/A:1020834603785","volume":"13","author":"F Bastos","year":"2002","unstructured":"Bastos, F, Bessa, J, Pacheco, CC, De Marco, P, Castro, PML (2002) Enrichment of microbial cultures able to degrade 1,3-dichloro-2-propanol: a comparison between batch and continuous methods. Biodegradation 13: 211\u2013220","journal-title":"Biodegradation"},{"key":"9256_CR5","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1016\/S0144-8609(00)00030-3","volume":"22","author":"JP Blancheton","year":"2000","unstructured":"Blancheton, JP (2000) Developments in recirculation systems for Mediterranean fish species. Aquac Eng 22: 17\u201331","journal-title":"Aquac Eng"},{"key":"9256_CR6","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1023\/B:AQUI.0000013308.33265.62","volume":"11","author":"M-T Borges","year":"2003","unstructured":"Borges, M-T, Morais, A, Castro, PML (2003) Performance of outdoor treatment systems for recirculation in an intensive turbot (Scophthalmus maximus) farm. Aquaculture International 11: 557\u2013570","journal-title":"Aquaculture International"},{"key":"9256_CR7","doi-asserted-by":"crossref","first-page":"1091","DOI":"10.1099\/00207713-49-3-1091","volume":"49","author":"F Dabboussi","year":"1999","unstructured":"Dabboussi, F, Hamze, H, Elomari, M, Verhille, S, Ba\u00efda, N, Izard, D, Leclerc, H (1999) Pseudomonas libanensis sp. nov., a new species isolated from Lebanese spring waters. Int J Syst Bacteriol 49: 1091\u20131101","journal-title":"Int J Syst Bacteriol"},{"key":"9256_CR8","volume-title":"Phylogeny inference package, version 3.57c","author":"J Felsenstein","year":"1995","unstructured":"Felsenstein, J (1995) Phylogeny inference package, version 3.57c. University of Washington, Seattle"},{"key":"9256_CR9","first-page":"791","volume-title":"Methods for General and Molecular Bacteriology","author":"P Gerhardt","year":"1994","unstructured":"Gerhardt, P, Murray, RGE, Wood, WA, Krieg, NR (1994) Methods for General and Molecular Bacteriology. American Society for Microbiology, Washington, DC, 791 p"},{"key":"9256_CR10","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1016\/S0043-1354(98)00177-8","volume":"33","author":"C Glass","year":"1999","unstructured":"Glass, C, Silverstein, J (1999) Denitrification of high-nitrate, high-salinity wastewater. Water Res 33: 223\u2013229","journal-title":"Water Res"},{"key":"9256_CR11","doi-asserted-by":"crossref","first-page":"1086","DOI":"10.2175\/106143097X125803","volume":"69","author":"C Glass","year":"1997","unstructured":"Glass, C, Silverstein, J, Oh, J (1997) Inhibition of denitrification in activated sludge by nitrite. Water Environ Res 69: 1086\u20131093","journal-title":"Water Environ Res"},{"key":"9256_CR12","doi-asserted-by":"crossref","first-page":"1239","DOI":"10.4319\/lo.1987.32.6.1239","volume":"32","author":"JC Goldman","year":"1987","unstructured":"Goldman, JC, Caron, DA, Dennett, MR (1987) Regulation of gross growth efficiency and ammonium regeneration in bacteria by substrate C:N ratio. Limnol Oceanogr 32: 1239\u20131252","journal-title":"Limnol Oceanogr"},{"key":"9256_CR13","unstructured":"Grassoff, K, Ehrhardt, M, Kremling, K (Eds) (1983) Methods of Seawater Analysis. 2nd Ed. Verlag-Chemie, Weinheim, 419 p"},{"key":"9256_CR14","doi-asserted-by":"crossref","first-page":"549","DOI":"10.1016\/S0045-6535(99)00311-2","volume":"40","author":"G Grguric","year":"2000","unstructured":"Grguric, G, Wetmore, SS, Fournier, RW (2000) Biological denitrification in a closed seawater system. Chemosphere 40: 549\u2013555","journal-title":"Chemosphere"},{"key":"9256_CR15","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1016\/j.aquaeng.2005.08.003","volume":"34","author":"MT Gutierrez-Wing","year":"2006","unstructured":"Gutierrez-Wing, MT, Malone, R (2006) Biological filters in aquaculture: Trends and research directions for freshwater and marine applications. Aquac Eng 34: 163\u2013171","journal-title":"Aquac Eng"},{"key":"9256_CR16","first-page":"95","volume":"41","author":"TA Hall","year":"1999","unstructured":"Hall, TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT. Nucleic Acids Symp Ser 41: 95\u201398","journal-title":"Nucleic Acids Symp Ser"},{"key":"9256_CR17","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1016\/S0043-1354(97)00199-1","volume":"32","author":"S Hallin","year":"1998","unstructured":"Hallin, S, Pell, M (1998) Metabolic properties of denitrifying bacteria adapting to methanol and ethanol in activated sludge. Water Res 32: 13\u201318","journal-title":"Water Res"},{"key":"9256_CR18","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1111\/j.1574-6941.2000.tb00684.x","volume":"31","author":"E Heinaru","year":"2000","unstructured":"Heinaru, E, Truu, J, Stottmeister, U, Heinaru, A (2000) Three types of phenol and p-cresol catabolism in phenol- and p-cresol-degrading bacteria isolated from river water continuously polluted with phenolic compounds FEMS. Microbiol Ecol 31: 195\u2013205","journal-title":"Microbiol Ecol"},{"key":"9256_CR19","first-page":"264","volume-title":"Design and operating guide for aquaculture seawater systems","author":"JE Huguenin","year":"1989","unstructured":"Huguenin, JE, Colt, J (1989) Design and operating guide for aquaculture seawater systems. Elsevier Interscience, Amsterdam, The Netherlands, 264 p"},{"key":"9256_CR20","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1016\/0043-1354(84)90215-X","volume":"18","author":"MN Jones","year":"1984","unstructured":"Jones, MN (1984) Nitrate reduction by shaking with cadmium: alternative to cadmium columns. Water Res 18: 643\u2013646","journal-title":"Water Res"},{"key":"9256_CR21","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/S1389-1723(04)70163-2","volume":"97","author":"H-R Kariminiaae-Hamedaani","year":"2004","unstructured":"Kariminiaae-Hamedaani, H-R, Kanda, K, Kato, F (2004) Denitrification activity of the bacterium Pseudomonas sp. ASM-2-3 isolated from the Ariake Sea tideland. J Biosci Bioeng 97: 39\u201344","journal-title":"J Biosci Bioeng"},{"key":"9256_CR22","doi-asserted-by":"crossref","first-page":"934","DOI":"10.2175\/106143096X127947","volume":"68","author":"M Kornaros","year":"1996","unstructured":"Kornaros, M, Zafiri, C, Lyberatos, G (1996) Kinetics of denitrification by Pseudomonas denitrificans under growth conditions limited by carbon and\/or nitrate or nitrite. Water Environ Res 68: 934\u2013945","journal-title":"Water Environ Res"},{"key":"9256_CR23","doi-asserted-by":"crossref","first-page":"1912","DOI":"10.1016\/S0043-1354(97)00403-X","volume":"32","author":"M Kornaros","year":"1998","unstructured":"Kornaros, M, Lyberatos, G (1998) Kinetic modelling of Pseudomonas denitrificans growth and denitrification under aerobic, anoxic and transient operating conditions. Water Res 32: 1912\u20131922","journal-title":"Water Res"},{"key":"9256_CR24","unstructured":"Krieg, N, Holt, JG (Eds) (1984) Bergey\u2019s Manual of Systematic Bacteriology, vol. I. Williams and Wilkins, 964 p"},{"key":"9256_CR25","doi-asserted-by":"crossref","first-page":"914","DOI":"10.1016\/S0043-1354(02)00383-4","volume":"37","author":"N Labb\u00e9","year":"2003","unstructured":"Labb\u00e9, N, Parent, S, Villemur, R (2003) Addition of trace metals increases denitrification rate in closed marine systems. Water Res 37: 914\u2013920","journal-title":"Water Res"},{"key":"9256_CR26","unstructured":"Lane, DJ (1991) 16S\/23S rRNA sequencing. In: Stackbrandt, E, Goodfellow, M (Eds.) Nucleic acid techniques in bacterial systematics. Chichester, John Wiley and Sons, UK, pp 115\u2013175"},{"key":"9256_CR27","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1016\/0922-338X(96)88820-9","volume":"82","author":"NM Lee","year":"1996","unstructured":"Lee, NM, Welander, T (1996) The effect of different carbon sources on respiratory denitrification in biological wastewater treatment. J Ferment Bioeng 82: 277\u2013285","journal-title":"J Ferment Bioeng"},{"key":"9256_CR28","doi-asserted-by":"crossref","first-page":"1903","DOI":"10.1016\/S0043-1354(97)00027-4","volume":"31","author":"H Lemmer","year":"1997","unstructured":"Lemmer, H, Zaglauer, A, Neef, A, Meier, H, Amann, R (1997) Denitrification in a methanol-fed fixed-bed reactor. Part 2: composition and ecology of the bacterial community in the biofilms. Water Res 31: 1903\u20131908","journal-title":"Water Res"},{"key":"9256_CR29","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/S0144-8609(00)00035-2","volume":"22","author":"N Leonard","year":"2000","unstructured":"Leonard, N, Blancheton, JP, Guiraud, JP (2000) Populations of heterotrophic bacteria in an experimental recirculating aquaculture system. Aquac Eng 22: 109\u2013120","journal-title":"Aquac Eng"},{"key":"9256_CR30","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1016\/S0269-7491(00)00069-5","volume":"111","author":"MX Loukidou","year":"2001","unstructured":"Loukidou, MX, Zouboulis, AI (2001) Comparison of two biological treatment processes using attached-growth biomass for sanitary landfill leachate treatment. Environ Pollut 111: 273\u2013281","journal-title":"Environ Pollut"},{"key":"9256_CR31","unstructured":"Metcalf & Eddy Inc. (Eds) (2003) Wastewater Engineering. Treatment and Reuse. 4th Ed. McGraw-Hill International Editions. Civil Engineering Series, 1334 p"},{"key":"9256_CR32","doi-asserted-by":"crossref","first-page":"224","DOI":"10.1016\/j.aquaeng.2005.07.005","volume":"34","author":"L Michaud","year":"2006","unstructured":"Michaud, L, Blancheton, JP, Bruni, V, Piedrahita, R (2006) Effect of particulate organic carbon on heterotrophic bacterial populations and nitrification efficiency in biological filters. Aquac Eng 34: 224\u2013233","journal-title":"Aquac Eng"},{"key":"9256_CR33","doi-asserted-by":"crossref","first-page":"1973","DOI":"10.1099\/00207713-52-6-1973","volume":"52","author":"P Munsch","year":"2002","unstructured":"Munsch, P, Alatossava, T, Marttinen, N, Meyer, JM, Christen, R, Gardan, L (2002) Pseudomonas costantinii sp. nov., another causal agent of brown blotch disease, isolated from cultivated mushroom sporophores in Finland. Int J Syst Evol Microbiol 52: 1973\u20131983","journal-title":"Int J Syst Evol Microbiol"},{"key":"9256_CR34","first-page":"189","volume-title":"Aquaculture and Environment","author":"TVR Pillay","year":"1992","unstructured":"Pillay, TVR (1992) Aquaculture and Environment. Fishing News Books, Oxford, England, 189 p"},{"key":"9256_CR35","doi-asserted-by":"crossref","first-page":"3073","DOI":"10.1128\/AEM.66.7.3073-3077.2000","volume":"66","author":"AM Pirttil\u00e4","year":"2000","unstructured":"Pirttil\u00e4, AM, Laukkanen, H, Pospiech, H, Myllyl\u00e4, R, Hohtola, A (2000) Detection of intracellular bacteria in the buds of Scotch pine (Pinus sylvestris L.) by in situ hybridization. Appl Environ Microbiol 66: 3073\u20133077","journal-title":"Appl Environ Microbiol"},{"key":"9256_CR36","first-page":"1026","volume-title":"Microbiology","author":"LM Prescott","year":"2002","unstructured":"Prescott, LM, Harley, JP, Klein, DA (2002) Microbiology, 5th Ed. McGraw-Hill, Inc., USA, 1026 p","edition":"5"},{"key":"9256_CR37","doi-asserted-by":"crossref","first-page":"2578","DOI":"10.1128\/AEM.63.7.2578-2585.1997","volume":"63","author":"S-K Rhee","year":"1997","unstructured":"Rhee, S-K, Lee, GM, Yoon, JH, Park, Y-H, Bae, H-S, Lee, S-T (1997) Anaerobic and aerobic degradation of pyridine by a newly isolated denitrifying bacterium. Appl Environ Microbiol 63: 2578\u20132585","journal-title":"Appl Environ Microbiol"},{"key":"9256_CR38","doi-asserted-by":"crossref","first-page":"684","DOI":"10.1271\/bbb.67.684","volume":"67","author":"V Riis","year":"2003","unstructured":"Riis, V, Miethe, D, Babel, W (2003) Formate-stimulated oxidation of methanol by Pseudomonas putida 9816. Biosci Biotechnol Biochem 67: 684\u2013690","journal-title":"Biosci Biotechnol Biochem"},{"key":"9256_CR39","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/S0168-1656(00)00401-6","volume":"86","author":"C Roca","year":"2001","unstructured":"Roca, C, Olsson, L (2001) Dynamic responses of Pseudomonas fluorescens DF57 to nitrogen or carbon source addition. J Biotechnol 86: 39\u201350","journal-title":"J Biotechnol"},{"key":"9256_CR40","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1016\/S0044-8486(02)00372-1","volume":"215","author":"Y Tal","year":"2003","unstructured":"Tal, Y, Watts, JEM, Schreier, SB, Sowers, KR, Schreier, HJ (2003) Characterization of the microbial community and nitrogen transformation processes associated with moving bed bioreactors in a closed recirculated mariculture system. Aquaculture 215: 187\u2013202","journal-title":"Aquaculture"},{"key":"9256_CR41","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1128\/AEM.68.1.65-72.2002","volume":"68","author":"P Tryfinopoulou","year":"2002","unstructured":"Tryfinopoulou, P, Tsakalidou, E, Nychas, G-JE (2002) Characterization of Pseudomonas spp. associated with spoilage of gilt-head sea bream stored under various conditions. Appl Environ Microbiol 68: 65\u201372","journal-title":"Appl Environ Microbiol"},{"key":"9256_CR42","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1016\/0044-8486(95)01151-X","volume":"139","author":"J Rijn Van","year":"1996","unstructured":"Van Rijn, J (1996) The potential for integrated biological treatment systems in recirculating fish culture\u2014a review. Aquaculture 139: 181\u2013201","journal-title":"Aquaculture"},{"key":"9256_CR43","doi-asserted-by":"crossref","first-page":"2615","DOI":"10.1128\/AEM.62.7.2615-2620.1996","volume":"62","author":"J Rijn Van","year":"1996","unstructured":"Van Rijn, J, Tal, Y, Barak, Y (1996) Influence of volatile fatty acids on nitrite accumulation by a Pseudomonas stutzeri strain isolated from a denitrifying fluidized bed reactor. Appl Environ Microbiol 62: 2615\u20132620","journal-title":"Appl Environ Microbiol"},{"key":"9256_CR44","doi-asserted-by":"crossref","first-page":"364","DOI":"10.1016\/j.aquaeng.2005.04.004","volume":"34","author":"J Rijn Van","year":"2006","unstructured":"Van Rijn, J, Tal, Y, Schreier, HJ (2006) Denitrification in recirculating systems: theory and applications. Aquac Eng 34: 364\u2013376","journal-title":"Aquac Eng"},{"key":"9256_CR45","doi-asserted-by":"crossref","first-page":"1559","DOI":"10.1099\/00207713-49-4-1559","volume":"4","author":"S Verhille","year":"1999","unstructured":"Verhille, S, Baida, N, Dabboussi, F, Hamze, M, Izard, D, Leclerc, H (1999) Pseudomonas gessardii sp. nov. and Pseudomonas migulae sp.nov., two new species from natural mineral waters. Int J Syst Bacteriol 4: 1559\u20131572","journal-title":"Int J Syst Bacteriol"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-007-9256-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00248-007-9256-8\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-007-9256-8","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,20]],"date-time":"2025-01-20T03:04:46Z","timestamp":1737342286000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00248-007-9256-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,8,4]]},"references-count":45,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2008,1]]}},"alternative-id":["9256"],"URL":"https:\/\/doi.org\/10.1007\/s00248-007-9256-8","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,8,4]]}}}