{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,28]],"date-time":"2026-02-28T02:09:35Z","timestamp":1772244575317,"version":"3.50.1"},"reference-count":129,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2019,1,8]],"date-time":"2019-01-08T00:00:00Z","timestamp":1546905600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100005416","name":"Research Council of Norway","doi-asserted-by":"crossref","award":["244646"],"award-info":[{"award-number":["244646"]}],"id":[{"id":"10.13039\/501100005416","id-type":"DOI","asserted-by":"crossref"}]},{"name":"Structured Program of R&D&I MarInfo","award":["NORTE-01-0145-FEDER-000031"],"award-info":[{"award-number":["NORTE-01-0145-FEDER-000031"]}]},{"name":"Norwegian Ministries of Foreign Affairs and Climate and Environment","award":["Arktis 2030"],"award-info":[{"award-number":["Arktis 2030"]}]},{"DOI":"10.13039\/501100001871","name":"Funda??o para a Ci?ncia e a Tecnologia","doi-asserted-by":"publisher","award":["NITROLIMIT - PTDC 2017 - PTDC\/CTA-AMB\/30997\/2017"],"award-info":[{"award-number":["NITROLIMIT - PTDC 2017 - PTDC\/CTA-AMB\/30997\/2017"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2019,8]]},"DOI":"10.1007\/s00248-018-01314-2","type":"journal-article","created":{"date-parts":[[2019,1,9]],"date-time":"2019-01-09T00:31:08Z","timestamp":1546993868000},"page":"388-408","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":36,"title":["Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime"],"prefix":"10.1007","volume":"78","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4779-6459","authenticated-orcid":false,"given":"Ant\u00f3nio Gaspar G.","family":"de Sousa","sequence":"first","affiliation":[]},{"given":"Maria Paola","family":"Tomasino","sequence":"additional","affiliation":[]},{"given":"Pedro","family":"Duarte","sequence":"additional","affiliation":[]},{"given":"Mar","family":"Fern\u00e1ndez-M\u00e9ndez","sequence":"additional","affiliation":[]},{"given":"Philipp","family":"Assmy","sequence":"additional","affiliation":[]},{"given":"Hugo","family":"Ribeiro","sequence":"additional","affiliation":[]},{"given":"Jaroslaw","family":"Surkont","sequence":"additional","affiliation":[]},{"given":"Ricardo B.","family":"Leite","sequence":"additional","affiliation":[]},{"given":"Jos\u00e9 B.","family":"Pereira-Leal","sequence":"additional","affiliation":[]},{"given":"Lu\u00eds","family":"Torgo","sequence":"additional","affiliation":[]},{"given":"Catarina","family":"Magalh\u00e3es","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2019,1,8]]},"reference":[{"key":"1314_CR1","doi-asserted-by":"publisher","first-page":"269","DOI":"10.5194\/tc-9-269-2015","volume":"9","author":"R Lindsay","year":"2015","unstructured":"Lindsay R, Schweiger A (2015) Arctic sea ice thickness loss determined using subsurface, aircraft, and satellite observations. Cryosphere 9:269\u2013283","journal-title":"Cryosphere"},{"key":"1314_CR2","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1002\/2013RG000431","volume":"52","author":"WN Meier","year":"2014","unstructured":"Meier WN, Hovelsrud GK, van Oort BEH, Key JR, Kovacs KM, Michel C, Haas C, Granskog MA, Gerland S, Perovich DK, Makshtas A, Reist JD (2014) Arctic sea ice in transformation: a review of recent observed changes and impacts on biology and human activity. Rev Geophys 52:185\u2013217","journal-title":"Rev Geophys"},{"key":"1314_CR3","doi-asserted-by":"publisher","first-page":"L13502","DOI":"10.1029\/2011GL047735","volume":"38","author":"J Maslanik","year":"2011","unstructured":"Maslanik J, Stroeve J, Fowler C, Emery W (2011) Distribution and trends in Arctic sea ice age through spring 2011. Geophys Res Lett 38:L13502. \n                    https:\/\/doi.org\/10.1029\/2011GL047735","journal-title":"Geophys Res Lett"},{"key":"1314_CR4","doi-asserted-by":"publisher","first-page":"1356","DOI":"10.1002\/grl.50349","volume":"40","author":"CL Parkinson","year":"2013","unstructured":"Parkinson CL, Comiso JC (2013) On the 2012 record low Arctic sea ice cover: combined impact of preconditioning and an August storm. Geophys Res Lett 40:1356\u20131361","journal-title":"Geophys Res Lett"},{"key":"1314_CR5","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1175\/BAMS-D-11-00070.1","volume":"93","author":"IV Polyakov","year":"2012","unstructured":"Polyakov IV, Walsh JE, Kwok R (2012) Recent changes of Arctic multiyear sea ice coverage and the likely causes. Bull Am Meteorol Soc 93:145\u2013151","journal-title":"Bull Am Meteorol Soc"},{"key":"1314_CR6","doi-asserted-by":"publisher","first-page":"40850","DOI":"10.1038\/srep40850","volume":"7","author":"P Assmy","year":"2017","unstructured":"Assmy P, Fern\u00e1ndez-M\u00e9ndez M, Duarte P, Meyer A, Randelhoff A, Mundy CJ, Olsen LM, Kauko HM, Bailey A, Chierici M, Cohen L, Doulgeris AP, Ehn JK, Fransson A, Gerland S, Hop H, Hudson SR, Hughes N, Itkin P, Johnsen G, King JA, Koch BP, Koenig Z, Kwasniewski S, Laney SR, Nicolaus M, Pavlov AK, Polashenski CM, Provost C, R\u00f6sel A, Sandbu M, Spreen G, Smedsrud LH, Sundfjord A, Taskjelle T, Tatarek A, Wiktor J, Wagner PM, Wold A, Steen H, Granskog MA (2017) Leads in Arctic pack ice enable early phytoplankton blooms below snow-covered sea ice. Sci Rep 7:40850. \n                    https:\/\/doi.org\/10.1038\/srep40850","journal-title":"Sci Rep"},{"key":"1314_CR7","doi-asserted-by":"publisher","first-page":"1408","DOI":"10.1126\/science.1215065","volume":"336","author":"KR Arrigo","year":"2012","unstructured":"Arrigo KR, Perovich DK, Pickart RS, Brown ZW, van Dijken GL, Lowry KE, Mills MM, Palmer MA, Balch WM, Bahr F, Bates NR, Benitez-Nelson C, Bowler B, Brownlee E, Ehn JK, Frey KE, Garley R, Laney SR, Lubelczyk L, Mathis J, Matsuoka A, Mitchell BG, Moore GWK, Ortega-Retuerta E, Pal S, Polashenski CM, Reynolds RA, Schieber B, Sosik HM, Stephens M, Swift JH (2012) Massive phytoplankton blooms under arctic sea ice. Science 336:1408","journal-title":"Science"},{"issue":"11","key":"1314_CR8","doi-asserted-by":"publisher","first-page":"e27492","DOI":"10.1371\/journal.pone.0027492","volume":"6","author":"AM Comeau","year":"2011","unstructured":"Comeau AM, Li WKW, Tremblay J\u00c9, Carmack EC, Lovejoy C (2011) Arctic Ocean microbial community structure before and after the 2007 record sea ice minimum. PLoS One 6(11):e27492. \n                    https:\/\/doi.org\/10.1371\/journal.pone.0027492","journal-title":"PLoS One"},{"key":"1314_CR9","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1111\/j.1751-8369.1991.tb00637.x","volume":"10","author":"WG Harrison","year":"1991","unstructured":"Harrison WG, Cota GF (1991) Primary production in polar waters: relation to nutrient availability. Polar Res 10:87\u2013104","journal-title":"Polar Res"},{"key":"1314_CR10","doi-asserted-by":"publisher","first-page":"208","DOI":"10.1093\/icesjms\/fss007","volume":"69","author":"F Rey","year":"2012","unstructured":"Rey F (2012) Declining silicate concentrations in the Norwegian and Barents Seas. ICES J Mar Sci 69:208\u2013212","journal-title":"ICES J Mar Sci"},{"key":"1314_CR11","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1038\/ismej.2011.76","volume":"6","author":"JS Bowman","year":"2012","unstructured":"Bowman JS, Rasmussen S, Blom N, Deming JW, Rysgaard S, Sicheritz-Ponten T (2012) Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene. ISME J 6:11\u201320","journal-title":"ISME J"},{"key":"1314_CR12","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1111\/1574-6941.12377","volume":"90","author":"I Hatam","year":"2014","unstructured":"Hatam I, Charchuk R, Lange B, Beckers J, Haas C, Lanoil B (2014) Distinct bacterial assemblages reside at different depths in Arctic multiyear sea ice. FEMS Microbiol Ecol 90:115\u2013125","journal-title":"FEMS Microbiol Ecol"},{"key":"1314_CR13","doi-asserted-by":"publisher","first-page":"2543","DOI":"10.1038\/ismej.2016.4","volume":"10","author":"I Hatam","year":"2016","unstructured":"Hatam I, Lange B, Beckers J, Haas C, Lanoil B (2016) Bacterial communities from Arctic seasonal sea ice are more compositionally variable than those from multi-year sea ice. ISME J 10:2543\u20132552","journal-title":"ISME J"},{"key":"1314_CR14","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1111\/j.1574-6941.2001.tb00812.x","volume":"35","author":"MV Brown","year":"2001","unstructured":"Brown MV, Bowman JP (2001) A molecular phylogenetic survey of sea-ice microbial communities (SIMCO). FEMS Microbiol Ecol 35:267\u2013275","journal-title":"FEMS Microbiol Ecol"},{"key":"1314_CR15","doi-asserted-by":"publisher","first-page":"95","DOI":"10.3389\/fmars.2017.00095","volume":"4","author":"B Wilson","year":"2017","unstructured":"Wilson B, M\u00fcller O, Nordmann EL, Seuthe L, Bratbak G, \u00d8vre\u00e5s L (2017) Changes in marine prokaryote composition with season and depth over an Arctic polar year. Front Mar Sci 4:95. \n                    https:\/\/doi.org\/10.3389\/fmars.2017.00095","journal-title":"Front Mar Sci"},{"key":"1314_CR16","doi-asserted-by":"publisher","first-page":"24","DOI":"10.3389\/fmicb.2018.00024","volume":"9","author":"O M\u00fcller","year":"2018","unstructured":"M\u00fcller O, Wilson B, Paulsen ML, Rumi\u0144ska A, Armo HR, Bratbak G, \u00d8vre\u00e5s L (2018) Spatiotemporal dynamics of ammonia-oxidizing Thaumarchaeota in distinct Arctic water masses. Front Microbiol 9:24. \n                    https:\/\/doi.org\/10.3389\/fmicb.2018.00024","journal-title":"Front Microbiol"},{"key":"1314_CR17","doi-asserted-by":"publisher","first-page":"e0148512","DOI":"10.1371\/journal.pone.0148512","volume":"11","author":"K Metfies","year":"2016","unstructured":"Metfies K, Von Appen WJ, Kilias E, Nicolaus A, N\u00f6thig EM (2016) Biogeography and photosynthetic biomass of arctic marine pico-eukaroytes during summer of the record sea ice minimum 2012. PLoS One 11:e0148512. \n                    https:\/\/doi.org\/10.1371\/journal.pone.0148512","journal-title":"PLoS One"},{"key":"1314_CR18","doi-asserted-by":"publisher","first-page":"1099","DOI":"10.3389\/fmicb.2017.01099","volume":"8","author":"AR Meshram","year":"2017","unstructured":"Meshram AR, Vader A, Kristiansen S, Gabrielsen TM (2017) Microbial eukaryotes in an arctic under-ice spring bloom north of Svalbard. Front Microbiol 8:1099. \n                    https:\/\/doi.org\/10.3389\/fmicb.2017.01099","journal-title":"Front Microbiol"},{"key":"1314_CR19","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1126\/science.1179798","volume":"326","author":"WKW Li","year":"2009","unstructured":"Li WKW, McLaughlin FA, Lovejoy C, Carmack EC (2009) Smallest algae thrive as the Arctic Ocean freshens. Science 326:539","journal-title":"Science"},{"key":"1314_CR20","doi-asserted-by":"publisher","first-page":"1709","DOI":"10.1007\/s00300-010-0877-x","volume":"33","author":"S Lasternas","year":"2010","unstructured":"Lasternas S, Agust\u00ed S (2010) Phytoplankton community structure during the record Arctic ice-melting of summer 2007. Polar Biol 33:1709\u20131717","journal-title":"Polar Biol"},{"key":"1314_CR21","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1016\/j.pocean.2012.09.006","volume":"109","author":"C Lalande","year":"2013","unstructured":"Lalande C, Bauerfeind E, N\u00f6thig EM, Beszczynska-M\u00f6ller A (2013) Impact of a warm anomaly on export fluxes of biogenic matter in the eastern Fram Strait. Prog Oceanogr 109:70\u201377","journal-title":"Prog Oceanogr"},{"key":"1314_CR22","doi-asserted-by":"publisher","first-page":"23349","DOI":"10.3402\/polar.v34.23349","volume":"34","author":"EM N\u00f6thig","year":"2015","unstructured":"N\u00f6thig EM, Bracher A, Engel A, Metfies K, Niehoff B, Peeken I, Bauerfeind E, Cherkasheva A, G\u00e4bler-Schwarz S, Hardge K, Kilias E, Kraft A, Mebrahtom Kidane Y, Lalande C, Piontek J, Thomisch K, Wurst M (2015) Summertime plankton ecology in fram strait - a compilation of long-and short-term observations. Polar Res 34:23349. \n                    https:\/\/doi.org\/10.3402\/polar.v34.23349","journal-title":"Polar Res"},{"key":"1314_CR23","doi-asserted-by":"publisher","first-page":"000072","DOI":"10.12952\/journal.elementa.000072","volume":"3","author":"JS Bowman","year":"2015","unstructured":"Bowman JS (2015) The relationship between sea ice bacterial community structure and biogeochemistry: a synthesis of current knowledge and known unknowns. Elem Sci Anthr 3:000072. \n                    https:\/\/doi.org\/10.12952\/journal.elementa.000072","journal-title":"Elem Sci Anthr"},{"key":"1314_CR24","doi-asserted-by":"publisher","first-page":"1884","DOI":"10.3389\/fmicb.2016.01884","volume":"7","author":"M Fern\u00e1ndez-M\u00e9ndez","year":"2016","unstructured":"Fern\u00e1ndez-M\u00e9ndez M, Turk-Kubo KA, Buttigieg PL, Rapp JZ, Krumpen T, Zehr JP, Boetius A (2016) Diazotroph diversity in the sea ice, melt ponds, and surface waters of the Eurasian basin of the Central Arctic Ocean. Front Microbiol 7:1884. \n                    https:\/\/doi.org\/10.3389\/fmicb.2016.01884","journal-title":"Front Microbiol"},{"key":"1314_CR25","doi-asserted-by":"publisher","first-page":"233","DOI":"10.1016\/j.pocean.2015.07.009","volume":"139","author":"C Pedr\u00f3s-Ali\u00f3","year":"2015","unstructured":"Pedr\u00f3s-Ali\u00f3 C, Potvin M, Lovejoy C (2015) Diversity of planktonic microorganisms in the Arctic Ocean. Prog Oceanogr 139:233\u2013243","journal-title":"Prog Oceanogr"},{"issue":"5","key":"1314_CR26","first-page":"22","volume":"97","author":"MA Granskog","year":"2016","unstructured":"Granskog MA et al (2016) Arctic research on thin ice: consequences of Arctic Sea Ice Loss. EOS Trans AGU 97(5):22\u201326","journal-title":"EOS Trans AGU"},{"key":"1314_CR27","doi-asserted-by":"publisher","unstructured":"Peterson AK et al N-ICE2015 (2016) Ocean turbulent fluxes from under-ice turbulence cluster (TIC) [v1.0]. \n                    https:\/\/doi.org\/10.21334\/npolar.2016.ab29f1e2","DOI":"10.21334\/npolar.2016.ab29f1e2"},{"key":"1314_CR28","doi-asserted-by":"publisher","unstructured":"Assmy P et al (2016) N-ICE2015 water column biogeochemistry [v1.0]. \n                    https:\/\/doi.org\/10.21334\/npolar.2016.3ebb7f64","DOI":"10.21334\/npolar.2016.3ebb7f64"},{"key":"1314_CR29","doi-asserted-by":"publisher","first-page":"6218","DOI":"10.1002\/2016JC012391","volume":"122","author":"A Meyer","year":"2017","unstructured":"Meyer A, Sundfjord A, Fer I, Provost C, Villacieros Robineau N, Koenig Z, Onarheim IH, Smedsrud LH, Duarte P, Dodd PA, Graham RM, Schmidtko S, Kauko HM (2017) Winter to summer oceanographic observations in the Arctic Ocean north of Svalbard. J Geophys Res Ocean 122:6218\u20136237","journal-title":"J Geophys Res Ocean"},{"key":"1314_CR30","unstructured":"Bauer RK (2017) Oceanmap: a plotting toolbox for 2D oceanographic data"},{"key":"1314_CR31","doi-asserted-by":"publisher","first-page":"285","DOI":"10.1126\/science.aai8204","volume":"356","author":"IV Polyakov","year":"2017","unstructured":"Polyakov IV, Pnyushkov AV, Alkire MB, Ashik IM, Baumann TM, Carmack EC, Goszczko I, Guthrie J, Ivanov VV, Kanzow T, Krishfield R, Kwok R, Sundfjord A, Morison J, Rember R, Yulin A (2017) Greater role for Atlantic inflows on sea-ice loss in the Eurasian Basin of the Arctic Ocean. Science 356:285\u2013291","journal-title":"Science"},{"key":"1314_CR32","doi-asserted-by":"publisher","unstructured":"Meyer et al (2016) N-ICE2015 ocean microstructure profiles (MSS90L). [Data set]. Norwegian Polar Institute. \n                    https:\/\/doi.org\/10.21334\/npolar.2016.774bf6ab","DOI":"10.21334\/npolar.2016.774bf6ab"},{"key":"1314_CR33","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1186\/s13742-015-0066-5","volume":"4","author":"A Kopf","year":"2015","unstructured":"Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah RZ, Sonnenschein EC, Cariou T, O\u2019Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Ca\u00e7ador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro CM, Luna GM, Quero GM, L\u00f6scher CR, Kremp A, DeLorenzo ME, \u00d8vre\u00e5s L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer CP, Ramos S, Magalh\u00e3es C, Jude-Lemeilleur F, Aguirre-Macedo ML, Wang S, Poulton N, Jones S, Collin R, Fuhrman JA, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov MM, Baltar F, Bodrossy L, van de Kamp J, Frampton DMF, Ostrowski M, van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder DC, Kandil MM, Amaral V, Biancalana F, Santana R, Pedrotti ML, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid EH, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, el Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, ten Hoopen P, Cochrane G, L\u2019Haridon S, Bizsel KC, Vezzi A, Lauro FM, Martin P, Jensen RM, Hinks J, Gebbels S, Rosselli R, de Pascale F, Schiavon R, dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira JAH, Barbier M, Turk V, Tinta T, Fuller WJ, Salihoglu I, Serakinci N, Ergoren MC, Bresnan E, Iriberri J, Nyhus PAF, Bente E, Karlsen HE, Golyshin PN, Gasol JM, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano CD, Gidley ML, Zingone A, Danovaro R, Tsiamis G, Clark MS, Costa AC, el Bour M, Martins AM, Collins RE, Ducluzeau AL, Martinez J, Costello MJ, Amaral-Zettler LA, Gilbert JA, Davies N, Field D, Gl\u00f6ckner FO (2015) The ocean sampling day consortium. Gigascience 4:27. \n                    https:\/\/doi.org\/10.1186\/s13742-015-0066-5","journal-title":"Gigascience"},{"key":"1314_CR34","doi-asserted-by":"publisher","first-page":"4516","DOI":"10.1073\/pnas.1000080107","volume":"108","author":"JG Caporaso","year":"2011","unstructured":"Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R (2011) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci 108:4516\u20134522","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR35","doi-asserted-by":"publisher","first-page":"1621","DOI":"10.1038\/ismej.2012.8","volume":"6","author":"JG Caporaso","year":"2012","unstructured":"Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R (2012) Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 6:1621\u20131624","journal-title":"ISME J"},{"key":"1314_CR36","doi-asserted-by":"publisher","first-page":"129","DOI":"10.3354\/ame01753","volume":"75","author":"A Apprill","year":"2015","unstructured":"Apprill A, Mcnally S, Parsons R, Weber L (2015) Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton. Aquat Microb Ecol 75:129\u2013137","journal-title":"Aquat Microb Ecol"},{"key":"1314_CR37","doi-asserted-by":"publisher","first-page":"1403","DOI":"10.1111\/1462-2920.13023","volume":"18","author":"AE Parada","year":"2016","unstructured":"Parada AE, Needham DM, Fuhrman JA (2016) Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples. Environ Microbiol 18:1403\u20131414","journal-title":"Environ Microbiol"},{"key":"1314_CR38","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1111\/j.1365-294X.2009.04480.x","volume":"19","author":"T Stoeck","year":"2010","unstructured":"Stoeck T et al (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol Ecol 19:21\u201331","journal-title":"Mol Ecol"},{"key":"1314_CR39","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/femsec\/fiw200","volume":"93","author":"R Piredda","year":"2017","unstructured":"Piredda R et al (2017) Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site. FEMS Microbiol Ecol 93:1\u201314","journal-title":"FEMS Microbiol Ecol"},{"key":"1314_CR40","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1016\/j.chemosphere.2018.01.171","volume":"199","author":"H Ribeiro","year":"2018","unstructured":"Ribeiro H, de Sousa T, Santos JP, Sousa AGG, Teixeira C, Monteiro MR, Salgado P, Mucha AP, Almeida CMR, Torgo L, Magalh\u00e3es C (2018) Potential of dissimilatory nitrate reduction pathways in polycyclic aromatic hydrocarbon degradation. Chemosphere 199:54\u201367","journal-title":"Chemosphere"},{"key":"1314_CR41","doi-asserted-by":"publisher","first-page":"5112","DOI":"10.1128\/AEM.01043-13","volume":"79","author":"JJ Kozich","year":"2013","unstructured":"Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD (2013) Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the miseq illumina sequencing platform. Appl Environ Microbiol 79:5112\u20135120","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR42","doi-asserted-by":"publisher","first-page":"7537","DOI":"10.1128\/AEM.01541-09","volume":"75","author":"PD Schloss","year":"2009","unstructured":"Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537\u20137541","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR43","doi-asserted-by":"publisher","first-page":"590","DOI":"10.1093\/nar\/gks1219","volume":"41","author":"C Quast","year":"2013","unstructured":"Quast C et al (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41:590\u2013596","journal-title":"Nucleic Acids Res"},{"key":"1314_CR44","doi-asserted-by":"publisher","first-page":"2194","DOI":"10.1093\/bioinformatics\/btr381","volume":"27","author":"RC Edgar","year":"2011","unstructured":"Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27:2194\u20132200","journal-title":"Bioinformatics"},{"key":"1314_CR45","doi-asserted-by":"publisher","first-page":"5261","DOI":"10.1128\/AEM.00062-07","volume":"73","author":"Q Wang","year":"2007","unstructured":"Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Na\u00efve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261\u20135267","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR46","doi-asserted-by":"publisher","first-page":"e00073","DOI":"10.1128\/mSphereDirect.00073-17","volume":"2","author":"SL Westcott","year":"2017","unstructured":"Westcott SL, Schloss PD (2017) OptiClust, an improved method for assigning amplicon-based sequence data to operational taxonomic units. mSphere 2:e00073\u2013e00017. \n                    https:\/\/doi.org\/10.1128\/mSphereDirect.00073-17","journal-title":"mSphere"},{"key":"1314_CR47","doi-asserted-by":"publisher","first-page":"335","DOI":"10.1038\/nmeth.f.303","volume":"7","author":"JG Caporaso","year":"2010","unstructured":"Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pe\u00f1a AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high- throughput community sequencing data. Nat Methods 7:335\u2013336","journal-title":"Nat Methods"},{"key":"1314_CR48","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772\u2013780","journal-title":"Mol Biol Evol"},{"key":"1314_CR49","doi-asserted-by":"publisher","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","volume":"30","author":"A Stamatakis","year":"2014","unstructured":"Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312\u20131313","journal-title":"Bioinformatics"},{"key":"1314_CR50","doi-asserted-by":"publisher","first-page":"379","DOI":"10.1002\/j.1538-7305.1948.tb01338.x","volume":"27","author":"CE Shannon","year":"1948","unstructured":"Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27:379\u2013423","journal-title":"Bell Syst Tech J"},{"key":"1314_CR51","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/0006-3207(92)91201-3","volume":"61","author":"DP Faith","year":"1992","unstructured":"Faith DP (1992) Conservation evaluation and phylogentic diversity. Biol Conserv 61:1\u201310","journal-title":"Biol Conserv"},{"key":"1314_CR52","first-page":"121","volume":"2","author":"DP Faith","year":"2006","unstructured":"Faith DP, Baker AM (2006) Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges. Evol Bioinforma 2:121\u2013128","journal-title":"Evol Bioinforma"},{"key":"1314_CR53","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1016\/0022-5193(66)90013-0","volume":"13","author":"EC Pielou","year":"1966","unstructured":"Pielou EC (1966) The measurement of diversity in different types of biological collections. J Theor Biol 13:131\u2013144","journal-title":"J Theor Biol"},{"key":"1314_CR54","doi-asserted-by":"publisher","first-page":"8228","DOI":"10.1128\/AEM.71.12.8228-8235.2005","volume":"71","author":"C Lozupone","year":"2005","unstructured":"Lozupone C, Knight R (2005) UniFrac : a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71:8228\u20138235","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR55","doi-asserted-by":"publisher","first-page":"1576","DOI":"10.1128\/AEM.01996-06","volume":"73","author":"CA Lozupone","year":"2007","unstructured":"Lozupone CA, Hamady M, Kelley ST, Knight R (2007) Quantitative and qualitative \u03b2 diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 73:1576\u20131585","journal-title":"Appl Environ Microbiol"},{"issue":"4","key":"1314_CR56","doi-asserted-by":"publisher","first-page":"e61217","DOI":"10.1371\/journal.pone.0061217","volume":"8","author":"PJ McMurdie","year":"2013","unstructured":"McMurdie PJ, Holmes S (2013) Phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One 8(4):e61217. \n                    https:\/\/doi.org\/10.1371\/journal.pone.0061217","journal-title":"PLoS One"},{"key":"1314_CR57","unstructured":"Harrell JFE (2018) Hmisc: Harrell Miscellaneous. \n                    https:\/\/CRAN.R-project.org\/package=Hmisc\n                    \n                  . Accessed March 2017"},{"key":"1314_CR58","unstructured":"Wei T & Simko V (2017) R package \u2018corrplot\u2019: visualization of a correlation matrix (version 0.84). \n                    https:\/\/github.com\/taiyun\/corrplot\n                    \n                  . Accessed March 2017"},{"key":"1314_CR59","volume-title":"R: a language and environment for statistical computing","author":"R Core Team","year":"2018","unstructured":"R Core Team (2018) R: a language and environment for statistical computing. R Found Stat Comput, Vienna, Austria"},{"key":"1314_CR60","doi-asserted-by":"crossref","unstructured":"Wickham H. ggplot2: elegant graphics for data analysis. (Springer-Verlag New York, 2009)","DOI":"10.1007\/978-0-387-98141-3"},{"key":"1314_CR61","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pcbi.1004226","volume":"11","author":"ZD Kurtz","year":"2015","unstructured":"Kurtz ZD, M\u00fcller CL, Miraldi ER, Littman DR, Blaser MJ, Bonneau RA (2015) Sparse and compositionally robust inference of microbial ecological networks. PLoS Comput Biol 11:1\u201325. \n                    https:\/\/doi.org\/10.1371\/journal.pcbi.1004226","journal-title":"PLoS Comput Biol"},{"key":"1314_CR62","doi-asserted-by":"publisher","first-page":"597","DOI":"10.1093\/nar\/gks1160","volume":"41","author":"L Guillou","year":"2013","unstructured":"Guillou L et al (2013) The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Res 41:597\u2013604","journal-title":"Nucleic Acids Res"},{"key":"1314_CR63","doi-asserted-by":"publisher","first-page":"e2584","DOI":"10.7717\/peerj.2584","volume":"4","author":"T Rognes","year":"2016","unstructured":"Rognes T, Flouri T, Nichols B, Quince C, Mah\u00e9 F (2016) VSEARCH: a versatile open source tool for metagenomics. Peer J 4:e2584. \n                    https:\/\/doi.org\/10.7717\/peerj.2584","journal-title":"Peer J"},{"key":"1314_CR64","doi-asserted-by":"publisher","first-page":"D595","DOI":"10.1093\/nar\/gkv1195","volume":"44","author":"A Mitchell","year":"2016","unstructured":"Mitchell A, Bucchini F, Cochrane G, Denise H, Hoopen P, Fraser M, Pesseat S, Potter S, Scheremetjew M, Sterk P, Finn RD (2016) EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data. Nucleic Acids Res 44:D595\u2013D603. \n                    https:\/\/doi.org\/10.1093\/nar\/gkv1195","journal-title":"Nucleic Acids Res"},{"key":"1314_CR65","doi-asserted-by":"publisher","first-page":"5069","DOI":"10.1128\/AEM.03006-05","volume":"72","author":"TZ DeSantis","year":"2006","unstructured":"DeSantis TZ et al (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72:5069\u20135072","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR66","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403\u2013410","journal-title":"J Mol Biol"},{"key":"1314_CR67","doi-asserted-by":"publisher","first-page":"D507","DOI":"10.1093\/nar\/gkr975","volume":"45","author":"IMA Chen","year":"2017","unstructured":"Chen IMA et al (2017) IMG\/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res 45:D507\u2013D516. \n                    https:\/\/doi.org\/10.1093\/nar\/gkr975","journal-title":"Nucleic Acids Res"},{"key":"1314_CR68","unstructured":"Becker RA, Wilks AR, Brownrigg R, Minka TP & Deckmyn A (2017) Maps: draw geographical maps"},{"key":"1314_CR69","doi-asserted-by":"publisher","first-page":"7774","DOI":"10.1073\/pnas.0803070105","volume":"105","author":"JA Fuhrman","year":"2008","unstructured":"Fuhrman JA, Steele JA, Hewson I, Schwalbach MS, Brown MV, Green JL, Brown JH (2008) A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci 105:7774\u20137778","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR70","doi-asserted-by":"publisher","first-page":"17633","DOI":"10.1073\/pnas.1208160109","volume":"109","author":"J-F Ghiglione","year":"2012","unstructured":"Ghiglione J-F, Galand PE, Pommier T, Pedros-Alio C, Maas EW, Bakker K, Bertilson S, Kirchman DL, Lovejoy C, Yager PL, Murray AE (2012) Pole-to-pole biogeography of surface and deep marine bacterial communities. Proc Natl Acad Sci 109:17633\u201317638","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR71","doi-asserted-by":"publisher","first-page":"1219","DOI":"10.1111\/j.1462-2920.2007.01243.x","volume":"9","author":"PD Countway","year":"2007","unstructured":"Countway PD, Gast RJ, Dennett MR, Savai P, Rose JM, Caron DA (2007) Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream). Environ Microbiol 9:1219\u20131232","journal-title":"Environ Microbiol"},{"key":"1314_CR72","doi-asserted-by":"publisher","first-page":"370","DOI":"10.1111\/jeu.12372","volume":"64","author":"D Xu","year":"2017","unstructured":"Xu D, Jiao N, Ren R, Warren A (2017) Distribution and diversity of micriobial eukaryotes in bathypelagic waters of the south China Sea. J Eukaryot Microbiol 64:370\u2013382","journal-title":"J Eukaryot Microbiol"},{"key":"1314_CR73","doi-asserted-by":"publisher","first-page":"1121","DOI":"10.3389\/fmicb.2017.01121","volume":"8","author":"D Xu","year":"2017","unstructured":"Xu D, Li R, Hu C, Sun P, Jiao N, Warren A (2017) Microbial eukaryote diversity and activity in the water column of the South China sea based on DNA and RNA high throughput sequencing. Front Microbiol 8:1121. \n                    https:\/\/doi.org\/10.3389\/fmicb.2017.01121","journal-title":"Front Microbiol"},{"key":"1314_CR74","doi-asserted-by":"publisher","first-page":"564","DOI":"10.1038\/ismej.2009.134","volume":"4","author":"PE Galand","year":"2010","unstructured":"Galand PE, Potvin M, Casamayor EO, Lovejoy C (2010) Hydrography shapes bacterial biogeography of the deep Arctic Ocean. ISME J 4:564\u2013576","journal-title":"ISME J"},{"key":"1314_CR75","doi-asserted-by":"publisher","first-page":"806","DOI":"10.1038\/nature01240","volume":"420","author":"RM Morris","year":"2002","unstructured":"Morris RM, Rapp\u00e9 MS, Connon SA, Vergin KL, Siebold WA, Carlson CA, Giovannoni SJ (2002) SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420:806\u2013810","journal-title":"Nature"},{"key":"1314_CR76","doi-asserted-by":"publisher","first-page":"1132","DOI":"10.1111\/j.1462-2920.2010.02154.x","volume":"12","author":"DL Kirchman","year":"2010","unstructured":"Kirchman DL, Cottrell MT, Lovejoy C (2010) The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ Microbiol 12:1132\u20131143","journal-title":"Environ Microbiol"},{"key":"1314_CR77","doi-asserted-by":"publisher","first-page":"1242","DOI":"10.1126\/science.1114057","volume":"309","author":"SJ Giovannoni","year":"2005","unstructured":"Giovannoni SJ et al (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309:1242\u20131245","journal-title":"Science"},{"key":"1314_CR78","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pone.0019725","volume":"6","author":"L Steindler","year":"2011","unstructured":"Steindler L, Schwalbach MS, Smith DP, Chan F, Giovannoni SJ (2011) Energy starved candidatus pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration. PLoS One 6:1\u201310. \n                    https:\/\/doi.org\/10.1371\/journal.pone.0019725","journal-title":"PLoS One"},{"key":"1314_CR79","doi-asserted-by":"publisher","first-page":"741","DOI":"10.1038\/nature06776","volume":"452","author":"HJ Tripp","year":"2008","unstructured":"Tripp HJ, Kitner JB, Schwalbach MS, Dacey JWH, Wilhelm LJ, Giovannoni SJ (2008) SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature 452:741\u2013744","journal-title":"Nature"},{"key":"1314_CR80","doi-asserted-by":"publisher","first-page":"4129","DOI":"10.1128\/AEM.70.7.4129-4135.2004","volume":"70","author":"RR Malmstrom","year":"2004","unstructured":"Malmstrom RR, Kiene RP, Cottrell MT, Kirchman DL (2004) Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean. Appl Environ Microbiol 70:4129\u20134135","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR81","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1016\/0924-7963(94)90015-9","volume":"5","author":"P Liss","year":"1994","unstructured":"Liss P, Malin G, Turner S, Holligan P (1994) Dimethyl sulphide and Phaeocystis: a review. J Mar Syst 5:41\u201353. \n                    https:\/\/doi.org\/10.1016\/0924-7963(94)90015-9","journal-title":"J Mar Syst"},{"key":"1314_CR82","doi-asserted-by":"publisher","first-page":"22965","DOI":"10.1029\/96JC03870","volume":"102","author":"PA Matrai","year":"1997","unstructured":"Matrai PA, Vernet M (1997) Dynamics of the vernal bloom in the marginal ice zone of the Barents Sea: dimethyl sulfide and dimethylsulfoniopropionate budgets. J Geophys Res 102:22965\u201322979","journal-title":"J Geophys Res"},{"key":"1314_CR83","doi-asserted-by":"publisher","first-page":"691","DOI":"10.1038\/ngeo1910","volume":"6","author":"M Levasseur","year":"2013","unstructured":"Levasseur M (2013) Impact of Arctic meltdown on the microbial cycling of sulphur. Nat Geosci 6:691\u2013700","journal-title":"Nat Geosci"},{"key":"1314_CR84","doi-asserted-by":"publisher","first-page":"1314","DOI":"10.1126\/science.233.4770.1314","volume":"233","author":"JWD Dacey","year":"1986","unstructured":"Dacey JWD, Wakeham SG (1986) Oceanic dimethylsulfide: production during zooplankton grazing on phytoplankton. Science 233:1314\u20131316","journal-title":"Science"},{"key":"1314_CR85","doi-asserted-by":"publisher","first-page":"2290","DOI":"10.1128\/AEM.02559-06","volume":"73","author":"U Stingl","year":"2007","unstructured":"Stingl U, Desiderio RA, Cho JC, Vergin KL, Giovannoni SJ (2007) The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl Environ Microbiol 73:2290\u20132296","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR86","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1016\/j.margen.2014.08.007","volume":"18","author":"A Klindworth","year":"2014","unstructured":"Klindworth A, Mann AJ, Huang S, Wichels A, Quast C, Waldmann J, Teeling H, Gl\u00f6ckner FO (2014) Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total RNA and pyrotag sequencing. Mar Genomics 18:185\u2013192","journal-title":"Mar Genomics"},{"key":"1314_CR87","doi-asserted-by":"publisher","first-page":"1","DOI":"10.7554\/eLife.11888.001","volume":"5","author":"H Teeling","year":"2016","unstructured":"Teeling H et al (2016) Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. Elife 5:1\u201331. \n                    https:\/\/doi.org\/10.7554\/eLife.11888.001","journal-title":"Elife"},{"key":"1314_CR88","doi-asserted-by":"publisher","first-page":"378","DOI":"10.1111\/1574-6941.12230","volume":"87","author":"B Wemheuer","year":"2014","unstructured":"Wemheuer B, G\u00fcllert S, Billerbeck S, Giebel HA, Voget S, Simon M, Daniel R (2014) Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches. FEMS Microbiol Ecol 87:378\u2013389","journal-title":"FEMS Microbiol Ecol"},{"key":"1314_CR89","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1111\/1758-2229.12428","volume":"8","author":"E Eronen-Rasimus","year":"2016","unstructured":"Eronen-Rasimus E, Piiparinen J, Karkman A, Lyra C, Gerland S, Kaartokallio H (2016) Bacterial communities in Arctic first-year drift ice during the winter\/spring transition. Environ Microbiol Rep 8:527\u2013535","journal-title":"Environ Microbiol Rep"},{"key":"1314_CR90","doi-asserted-by":"publisher","first-page":"e86887","DOI":"10.1371\/journal.pone.0086887","volume":"9","author":"D Han","year":"2014","unstructured":"Han D, Kang I, Ha HK, Kim HC, Kim OS, Lee BY, Cho JC, Hur HG, Lee YK (2014) Bacterial communities of surface mixed layer in the pacific sector of the western Arctic Ocean during sea-ice melting. PLoS One 9:e86887. \n                    https:\/\/doi.org\/10.1371\/journal.pone.0086887","journal-title":"PLoS One"},{"key":"1314_CR91","doi-asserted-by":"publisher","first-page":"505","DOI":"10.1128\/AEM.68.2.505-518.2002","volume":"68","author":"N Bano","year":"2002","unstructured":"Bano N, Hollibaugh JT (2002) Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean. Appl Environ Microbiol 68:505\u2013518","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR92","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1016\/j.copbio.2007.04.006","volume":"18","author":"MM Yakimov","year":"2007","unstructured":"Yakimov MM, Timmis KN, Golyshin PN (2007) Obligate oil-degrading marine bacteria. Curr Opin Biotechnol 18:257\u2013266","journal-title":"Curr Opin Biotechnol"},{"key":"1314_CR93","doi-asserted-by":"crossref","unstructured":"Giudice AL, Bruni V, de Domenico M & Michaud L (2010) Psychrophiles-cold-adapted hydrocarbon-degrading microorganisms. Springer Berlin Heidelberg.","DOI":"10.1007\/978-3-540-77587-4_139"},{"key":"1314_CR94","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1016\/S0168-6496(03)00298-8","volume":"47","author":"DH Green","year":"2004","unstructured":"Green DH, Llewellyn LE, Negri AP, Blackburn SI, Bolch CJS (2004) Phylogenetic and functional diversity of the cultivable bacterial community associated with the paralytic shellfish poisoning dinoflagellate Gymnodinium catenatum. FEMS Microbiol Ecol 47:345\u2013357","journal-title":"FEMS Microbiol Ecol"},{"key":"1314_CR95","doi-asserted-by":"publisher","first-page":"13591","DOI":"10.1073\/pnas.1507274112","volume":"112","author":"DJ Lea-Smith","year":"2015","unstructured":"Lea-Smith DJ, Biller SJ, Davey MP, Cotton CAR, Perez Sepulveda BM, Turchyn AV, Scanlan DJ, Smith AG, Chisholm SW, Howe CJ (2015) Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle. Proc Natl Acad Sci 112:13591\u201313596","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR96","doi-asserted-by":"publisher","first-page":"245","DOI":"10.1038\/ismej.2013.178","volume":"8","author":"JD Taylor","year":"2014","unstructured":"Taylor JD, Cottingham SD, Billinge J, Cunliffe M (2014) Seasonal microbial community dynamics correlate with phytoplankton-derived polysaccharides in surface coastal waters. ISME J 8:245\u2013248","journal-title":"ISME J"},{"key":"1314_CR97","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/2049-2618-2-34","volume":"2","author":"BJ Tully","year":"2014","unstructured":"Tully BJ, Tully BJ, Sachdeva R, Heidelberg KB, Heidelberg JF (2014) Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data. Microbiome 2:1\u201314. \n                    https:\/\/doi.org\/10.1186\/2049-2618-2-34","journal-title":"Microbiome"},{"key":"1314_CR98","doi-asserted-by":"publisher","first-page":"2402","DOI":"10.1128\/AEM.07130-11","volume":"78","author":"MP Nikrad","year":"2012","unstructured":"Nikrad MP, Cottrell MT, Kirchman DL (2012) Abundance and single-cell activity of heterotrophic bacterial groups in the western Arctic Ocean in summer and winter. Appl Environ Microbiol 78:2402\u20132409","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR99","doi-asserted-by":"publisher","first-page":"45","DOI":"10.3354\/ame047045","volume":"47","author":"R Malmstrom","year":"2007","unstructured":"Malmstrom R, Straza T, Cottrell M, Kirchman D (2007) Diversity, abundance, and biomass production of bacterial groups in the western Arctic Ocean. Aquat Microb Ecol 47:45\u201355","journal-title":"Aquat Microb Ecol"},{"key":"1314_CR100","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1016\/j.femsec.2004.09.001","volume":"51","author":"GCJ Abell","year":"2005","unstructured":"Abell GCJ, Bowman JP (2005) Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol 51:265\u2013277","journal-title":"FEMS Microbiol Ecol"},{"key":"1314_CR101","doi-asserted-by":"publisher","first-page":"1901","DOI":"10.1038\/ismej.2012.31","volume":"6","author":"JJ Grzymski","year":"2012","unstructured":"Grzymski JJ, Riesenfeld CS, Williams TJ, Dussaq AM, Ducklow H, Erickson M, Cavicchioli R, Murray AE (2012) A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters. ISME J 6:1901\u20131915","journal-title":"ISME J"},{"key":"1314_CR102","doi-asserted-by":"publisher","first-page":"1669","DOI":"10.1038\/ismej.2013.37","volume":"7","author":"J Ladau","year":"2013","unstructured":"Ladau J, Sharpton TJ, Finucane MM, Jospin G, Kembel SW, O'Dwyer J, Koeppel AF, Green JL, Pollard KS (2013) Global marine bacterial diversity peaks at high latitudes in winter. ISME J 7:1669\u20131677","journal-title":"ISME J"},{"key":"1314_CR103","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1099\/00207713-48-1-223","volume":"48","author":"JJ Gosink","year":"1998","unstructured":"Gosink JJ, Woese CR, Staley JT (1998) Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of \u2018Flectobacillus glomera\u2019. Int J Syst Bacteriol 48:223\u2013235","journal-title":"Int J Syst Bacteriol"},{"key":"1314_CR104","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1146\/annurev.micro.53.1.189","volume":"53","author":"JT Staley","year":"1999","unstructured":"Staley JT, Gosink JJ (1999) Poles apart: biodiversity and biogeography of sea ice bacteria. Annu Rev Microbiol 53:189\u2013215","journal-title":"Annu Rev Microbiol"},{"key":"1314_CR105","doi-asserted-by":"publisher","first-page":"8724","DOI":"10.1073\/pnas.0712027105","volume":"105","author":"JM Gonzalez","year":"2008","unstructured":"Gonzalez JM, Fernandez-Gomez B, Fernandez-Guerra A, Gomez-Consarnau L, Sanchez O, Coll-Llado M, del Campo J, Escudero L, Rodriguez-Martinez R, Alonso-Saez L, Latasa M, Paulsen I, Nedashkovskaya O, Lekunberri I, Pinhassi J, Pedros-Alio C (2008) Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria). Proc Natl Acad Sci 105:8724\u20138729","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR106","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fmicb.2014.00646","volume":"5","author":"TO Delmont","year":"2014","unstructured":"Delmont TO, Hammar KM, Ducklow HW, Yager PL, Post AF (2014) Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya. Front Microbiol 5:1\u201313. \n                    https:\/\/doi.org\/10.3389\/fmicb.2014.00646","journal-title":"Front Microbiol"},{"key":"1314_CR107","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-018-26016-0","volume":"8","author":"JE Wollenburg","year":"2018","unstructured":"Wollenburg JE, Katlein C, Nehrke G, N\u00f6thig EM, Matthiessen J, Wolf- Gladrow DA, Nikolopoulos A, G\u00e1zquez-Sanchez F, Rossmann L, Assmy P, Babin M, Bruyant F, Beaulieu M, Dybwad C, Peeken I (2018) Ballasting by cryogenic gypsum enhances carbon export in a Phaeocystis under-ice bloom. Sci Rep 8:1\u20139. \n                    https:\/\/doi.org\/10.1038\/s41598-018-26016-0","journal-title":"Sci Rep"},{"key":"1314_CR108","doi-asserted-by":"publisher","first-page":"2444","DOI":"10.1111\/j.1462-2920.2008.01674.x","volume":"10","author":"L Alonso-S\u00e1ez","year":"2008","unstructured":"Alonso-S\u00e1ez L, S\u00e1nchez O, Gasol JM, Balagu\u00e9 V, Pedr\u00f3s-Alio C (2008) Winter-to-summer changes in the composition and single-cell activity of near-surface Arctic prokaryotes. Environ Microbiol 10:2444\u20132454","journal-title":"Environ Microbiol"},{"key":"1314_CR109","doi-asserted-by":"publisher","first-page":"17989","DOI":"10.1073\/pnas.1201914109","volume":"109","author":"L Alonso-Saez","year":"2012","unstructured":"Alonso-Saez L, Waller AS, Mende DR, Bakker K, Farnelid H, Yager PL, Lovejoy C, Tremblay JE, Potvin M, Heinrich F, Estrada M, Riemann L, Bork P, Pedros-Alio C, Bertilsson S (2012) Role for urea in nitrification by polar marine Archaea. Proc Natl Acad Sci 109:17989\u201317994","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR110","doi-asserted-by":"publisher","first-page":"695","DOI":"10.1038\/371695a0","volume":"371","author":"EF DeLong","year":"1994","unstructured":"DeLong EF, Wu KY, Pr\u00e9zelin BB, Jovine RVM (1994) High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695\u2013697","journal-title":"Nature"},{"key":"1314_CR111","doi-asserted-by":"publisher","first-page":"495","DOI":"10.4319\/lo.2007.52.2.0495","volume":"52","author":"DL Kirchman","year":"2007","unstructured":"Kirchman DL, Elifantz H, Dittel AI, Malmstrom RR, Cottrell MT (2007) Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean. Limnol Oceanogr 52:495\u2013507","journal-title":"Limnol Oceanogr"},{"key":"1314_CR112","doi-asserted-by":"publisher","first-page":"7888","DOI":"10.1073\/pnas.1605501113","volume":"113","author":"J-G Kim","year":"2016","unstructured":"Kim J-G, Park SJ, Sinninghe Damst\u00e9 JS, Schouten S, Rijpstra WIC, Jung MY, Kim SJ, Gwak JH, Hong H, Si OJ, Lee SH, Madsen EL, Rhee SK (2016) Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea. Proc Natl Acad Sci 113:7888\u20137893","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR113","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fmars.2016.00237","volume":"3","author":"BB Tolar","year":"2016","unstructured":"Tolar BB, Powers LC, Miller WL, Wallsgrove NJ, Popp BN, Hollibaugh JT (2016) Ammonia oxidation in the ocean can be inhibited by nanomolar concentrations of hydrogen peroxide. Front Mar Sci 3:1\u201316. \n                    https:\/\/doi.org\/10.3389\/fmars.2016.00237","journal-title":"Front Mar Sci"},{"key":"1314_CR114","doi-asserted-by":"publisher","first-page":"2026","DOI":"10.1128\/AEM.01907-10","volume":"77","author":"GD Christman","year":"2011","unstructured":"Christman GD, Cottrell MT, Popp BN, Gier E, Kirchman DL (2011) Abundance, diversity, and activity of ammonia-oxidizing prokaryotes in the coastal arctic ocean in summer and winter. Appl Environ Microbiol 77:2026\u20132034","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR115","doi-asserted-by":"publisher","first-page":"4661","DOI":"10.1038\/srep04661","volume":"4","author":"E Pedneault","year":"2014","unstructured":"Pedneault E, Galand PE, Potvin M, Tremblay J\u00c9, Lovejoy C (2014) Archaeal amoA and ureC genes and their transcriptional activity in the Arctic Ocean. Sci Rep 4:4661. \n                    https:\/\/doi.org\/10.1038\/srep04661","journal-title":"Sci Rep"},{"key":"1314_CR116","doi-asserted-by":"publisher","first-page":"1782","DOI":"10.1126\/science.1149976","volume":"318","author":"IA Berg","year":"2007","unstructured":"Berg IA, Kockelkorn D, Buckel W, Fuchs G (2007) A 3-hydroxypropionate\/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea. Science 318:1782\u20131786","journal-title":"Science"},{"key":"1314_CR117","doi-asserted-by":"publisher","first-page":"7501","DOI":"10.1128\/AEM.01960-12","volume":"78","author":"R Hatzenpichler","year":"2012","unstructured":"Hatzenpichler R (2012) Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea. Appl Environ Microbiol 78:7501\u20137510","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR118","doi-asserted-by":"publisher","first-page":"6013","DOI":"10.1128\/AEM.01431-14","volume":"80","author":"TL Connelly","year":"2014","unstructured":"Connelly TL, Baer SE, Cooper JT, Bronk DA (2014) Urea uptake and carbon fixation by marine pelagic bacteria and archaea during the Arctic summer and winter seasons. Appl Environ Microbiol 80:6013\u20136022","journal-title":"Appl Environ Microbiol"},{"key":"1314_CR119","doi-asserted-by":"publisher","first-page":"16771","DOI":"10.1073\/pnas.1106427108","volume":"108","author":"M Mu\u00dfmann","year":"2011","unstructured":"Mu\u00dfmann M et al (2011) Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. Proc Natl Acad Sci 108:16771\u201316776","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR120","doi-asserted-by":"publisher","first-page":"11395","DOI":"10.1073\/pnas.1322132111","volume":"111","author":"AK Hawley","year":"2014","unstructured":"Hawley AK, Brewer HM, Norbeck AD, Pa a-Toli L, Hallam SJ (2014) Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes. Proc Natl Acad Sci 111:11395\u201311400","journal-title":"Proc Natl Acad Sci"},{"key":"1314_CR121","doi-asserted-by":"publisher","first-page":"1614","DOI":"10.1038\/ismej.2017.29","volume":"11","author":"DM Needham","year":"2017","unstructured":"Needham DM, Sachdeva R, Fuhrman JA (2017) Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters. ISME J 11:1614\u20131629","journal-title":"ISME J"},{"key":"1314_CR122","doi-asserted-by":"publisher","first-page":"4838","DOI":"10.1111\/1462-2920.13457","volume":"19","author":"BB Tolar","year":"2017","unstructured":"Tolar BB, Wallsgrove NJ, Popp BN, Hollibaugh JT (2017) Oxidation of urea-derived nitrogen by thaumarchaeota-dominated marine nitrifying communities. Environ Microbiol 19:4838\u20134850","journal-title":"Environ Microbiol"},{"key":"1314_CR123","doi-asserted-by":"publisher","first-page":"419","DOI":"10.1111\/jeu.12287","volume":"63","author":"L Grossmann","year":"2016","unstructured":"Grossmann L, Bock C, Schweikert M, Boenigk J (2016) Small but Manifold-Hidden Diversity in \u2018Spumella-like Flagellates\u2019. J Eukaryot Microbiol 63:419\u2013439","journal-title":"J Eukaryot Microbiol"},{"key":"1314_CR124","doi-asserted-by":"publisher","first-page":"2908","DOI":"10.1111\/j.1365-294X.2010.04669.x","volume":"19","author":"V Nolte","year":"2010","unstructured":"Nolte V et al (2010) Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity. Mol Ecol 19:2908\u20132915","journal-title":"Mol Ecol"},{"key":"1314_CR125","doi-asserted-by":"publisher","first-page":"179","DOI":"10.3354\/ame01662","volume":"71","author":"J Rottberger","year":"2013","unstructured":"Rottberger J, Gruber A, Boenigk J, Kroth PG (2013) Influence of nutrients and light on autotrophic, mixotrophic and heterotrophic freshwater chrysophytes. Aquat Microb Ecol 71:179\u2013191","journal-title":"Aquat Microb Ecol"},{"key":"1314_CR126","doi-asserted-by":"publisher","first-page":"1953","DOI":"10.1038\/ismej.2014.16","volume":"8","author":"ZM McKie-Krisberg","year":"2014","unstructured":"McKie-Krisberg ZM, Sanders RW (2014) Phagotrophy by the picoeukaryotic green alga Micromonas: implications for Arctic Oceans. ISME J 8:1953\u20131961","journal-title":"ISME J"},{"key":"1314_CR127","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1111\/j.1529-8817.2006.00310.x","volume":"43","author":"C Lovejoy","year":"2007","unstructured":"Lovejoy C, Vincent WF, Bonilla S, Roy S, Martineau MJ, Terrado R, Potvin M, Massana R, Pedr\u00f3s-Ali\u00f3 C (2007) Distribution, phylogeny, and growth of cold-adapted picoprasinophytes in arctic seas. J Phycol 43:78\u201389","journal-title":"J Phycol"},{"key":"1314_CR128","doi-asserted-by":"publisher","first-page":"2433","DOI":"10.1111\/j.1462-2920.2008.01673.x","volume":"10","author":"E Foulon","year":"2008","unstructured":"Foulon E, Not F, Jalabert F, Cariou T, Massana R, Simon N (2008) Ecological niche partitioning in the picoplanktonic green alga Micromonas pusilla: evidence from environmental surveys using phylogenetic probes. Environ Microbiol 10:2433\u20132443","journal-title":"Environ Microbiol"},{"key":"1314_CR129","doi-asserted-by":"publisher","first-page":"1271","DOI":"10.1007\/s00300-014-1519-5","volume":"37","author":"E Kilias","year":"2014","unstructured":"Kilias E, Kattner G, Wolf C, Frickenhaus S, Metfies K (2014) A molecular survey of protist diversity through the central Arctic Ocean. Polar Biol 37:1271\u20131287","journal-title":"Polar Biol"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-018-01314-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00248-018-01314-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-018-01314-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,1,7]],"date-time":"2020-01-07T19:20:26Z","timestamp":1578424826000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00248-018-01314-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,1,8]]},"references-count":129,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2019,8]]}},"alternative-id":["1314"],"URL":"https:\/\/doi.org\/10.1007\/s00248-018-01314-2","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,1,8]]},"assertion":[{"value":"26 July 2018","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"25 December 2018","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 January 2019","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with Ethical Standards"}},{"value":"The authors declare that they have no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing Interests"}}]}}