{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T03:34:43Z","timestamp":1761708883466},"reference-count":60,"publisher":"Springer Science and Business Media LLC","issue":"10","license":[{"start":{"date-parts":[[2013,7,12]],"date-time":"2013-07-12T00:00:00Z","timestamp":1373587200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Immunogenetics"],"published-print":{"date-parts":[[2013,10]]},"DOI":"10.1007\/s00251-013-0718-5","type":"journal-article","created":{"date-parts":[[2013,7,11]],"date-time":"2013-07-11T13:56:26Z","timestamp":1373550986000},"page":"737-748","source":"Crossref","is-referenced-by-count":9,"title":["How immunogenetically different are domestic pigs from wild boars: a perspective from single-nucleotide polymorphisms of 19 immunity-related candidate genes"],"prefix":"10.1007","volume":"65","author":[{"given":"Shanyuan","family":"Chen","sequence":"first","affiliation":[]},{"given":"Rui","family":"Gomes","sequence":"additional","affiliation":[]},{"given":"V\u00e2nia","family":"Costa","sequence":"additional","affiliation":[]},{"given":"Pedro","family":"Santos","sequence":"additional","affiliation":[]},{"given":"Rui","family":"Charneca","sequence":"additional","affiliation":[]},{"given":"Ya-ping","family":"Zhang","sequence":"additional","affiliation":[]},{"given":"Xue-hong","family":"Liu","sequence":"additional","affiliation":[]},{"given":"Shao-qing","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Pedro","family":"Bento","sequence":"additional","affiliation":[]},{"given":"Jose-Luis","family":"Nunes","sequence":"additional","affiliation":[]},{"given":"J\u00f3zsef","family":"Buzg\u00f3","sequence":"additional","affiliation":[]},{"given":"Gyula","family":"Varga","sequence":"additional","affiliation":[]},{"given":"Istv\u00e1n","family":"Anton","sequence":"additional","affiliation":[]},{"given":"Attila","family":"Zsolnai","sequence":"additional","affiliation":[]},{"given":"Albano","family":"Beja-Pereira","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2013,7,12]]},"reference":[{"key":"718_CR1","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1038\/nmeth0410-248","volume":"7","author":"IA Adzhubei","year":"2010","unstructured":"Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR (2010) A method and server for predicting damaging missense mutations. Nat Methods 7:248\u20139","journal-title":"Nat Methods"},{"key":"718_CR2","doi-asserted-by":"crossref","first-page":"711","DOI":"10.1101\/gr.086652.108","volume":"19","author":"JM Akey","year":"2009","unstructured":"Akey JM (2009) Constructing genomic maps of positive selection in humans: where do we go from here? Genome Res 19:711\u2013722","journal-title":"Genome Res"},{"key":"718_CR3","doi-asserted-by":"crossref","first-page":"797","DOI":"10.1111\/j.1095-8312.2010.01530.x","volume":"101","author":"PC Alves","year":"2010","unstructured":"Alves PC, Pinheiro I, Godinho R, Vicente J, Gortazar C, Scandura M (2010) Genetic diversity of wild boar populations and domestic pig breeds (Sus scrofa) in south-western Europe. Biol J Linn Soc 101:797\u2013822","journal-title":"Biol J Linn Soc"},{"key":"718_CR4","doi-asserted-by":"crossref","first-page":"e14782","DOI":"10.1371\/journal.pone.0014782","volume":"6","author":"AJ Amaral","year":"2011","unstructured":"Amaral AJ, Ferretti L, Megens H-J, Crooijmans RPMA, Nie H, Ramos-Onsins SE, Perez-Enciso M, Schook LB, Groenen MAM (2011) Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA. PLoS One 6:e14782","journal-title":"PLoS One"},{"key":"718_CR5","doi-asserted-by":"crossref","first-page":"1587","DOI":"10.1098\/rspb.2010.2056","volume":"278","author":"W Amos","year":"2011","unstructured":"Amos W, Bryant C (2011) Using human demographic history to infer natural selection reveals contrasting patterns on different families of immune genes. Proc R Soc B Biol Sci 278:1587\u20131594","journal-title":"Proc R Soc B Biol Sci"},{"key":"718_CR6","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1101\/sqb.2009.74.039","volume":"74","author":"L Andersson","year":"2009","unstructured":"Andersson L (2009) Studying phenotypic evolution in domestic animals: a walk in the footsteps of Charles Darwin. Cold Spring Harb Symp Quant Biol 74:319\u2013325","journal-title":"Cold Spring Harb Symp Quant Biol"},{"key":"718_CR7","doi-asserted-by":"crossref","first-page":"2755","DOI":"10.1093\/molbev\/msp190","volume":"26","author":"AM Andr\u00e9s","year":"2009","unstructured":"Andr\u00e9s AM, Hubisz MJ, Indap A, Torgerson DG, Degenhardt JD, Boyko AR, Gutenkunst RN, White TJ, Green ED, Bustamante CD, Clark AG, Nielsen R (2009) Targets of balancing selection in the human genome. Mol Biol Evol 26:2755\u20132764","journal-title":"Mol Biol Evol"},{"key":"718_CR8","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1186\/1471-2105-9-323","volume":"9","author":"T Antao","year":"2008","unstructured":"Antao T, Lopes A, Lopes R, Beja-Pereira A, Luikart G (2008) LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinforma 9:323","journal-title":"BMC Bioinforma"},{"key":"718_CR9","doi-asserted-by":"crossref","first-page":"360","DOI":"10.1038\/nature11837","volume":"495","author":"E Axelsson","year":"2013","unstructured":"Axelsson E, Ratnakumar A, Arendt M-L, Maqbool K, Webster MT, Perloski M, Liberg O, Arnemo JM, Hedhammar A, Lindblad-Toh K (2013) The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature 495:360\u2013364","journal-title":"Nature"},{"key":"718_CR10","doi-asserted-by":"crossref","first-page":"340","DOI":"10.1038\/ng.78","volume":"40","author":"LB Barreiro","year":"2008","unstructured":"Barreiro LB, Laval G, Quach H, Patin E, Quintana-Murci L (2008) Natural selection has driven population differentiation in modern humans. Nat Genet 40:340\u20135","journal-title":"Nat Genet"},{"key":"718_CR11","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1038\/nrg2698","volume":"11","author":"LB Barreiro","year":"2010","unstructured":"Barreiro LB, Quintana-Murci L (2010) From evolutionary genetics to human immunology: how selection shapes host defence genes. Nat Rev Genet 11:17\u201330","journal-title":"Nat Rev Genet"},{"key":"718_CR12","doi-asserted-by":"crossref","first-page":"969","DOI":"10.1111\/j.1365-294X.2004.02125.x","volume":"13","author":"MA Beaumont","year":"2004","unstructured":"Beaumont MA, Balding DJ (2004) Identifying adaptive genetic divergence among populations from genome scans. Mol Ecol 13:969\u2013980","journal-title":"Mol Ecol"},{"key":"718_CR13","doi-asserted-by":"crossref","first-page":"1619","DOI":"10.1098\/rspb.1996.0237","volume":"263","author":"MA Beaumont","year":"1996","unstructured":"Beaumont MA, Nichols RA (1996) Evaluating loci for use in the genetic analysis of population structure. Proc R Soc London B 263:1619\u20131626","journal-title":"Proc R Soc London B"},{"key":"718_CR14","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1007\/s00251-009-0409-4","volume":"62","author":"I-M Bergman","year":"2010","unstructured":"Bergman I-M, Rosengren J, Edman K, Edfors I (2010) European wild boars and domestic pigs display different polymorphic patterns in the Toll-like receptor (TLR) 1, TLR2, and TLR6 genes. Immunogenetics 62:49\u201358","journal-title":"Immunogenetics"},{"key":"718_CR15","doi-asserted-by":"crossref","first-page":"1153","DOI":"10.1038\/nature04240","volume":"437","author":"CD Bustamante","year":"2005","unstructured":"Bustamante CD, Fledel-Alon A, Williamson S, Nielsen R, Hubisz MT, Glanowski S, Tanenbaum DM, White TJ, Sninsky JJ, Hernandez RD, Civello D, Adams MD, Cargill M, Clark AG (2005) Natural selection on protein-coding genes in the human genome. Nature 437:1153\u20137","journal-title":"Nature"},{"key":"718_CR16","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1186\/1471-2148-11-24","volume":"11","author":"S Chen","year":"2011","unstructured":"Chen S, Costa V, Beja-Pereira A (2011) Evolutionary patterns of two major reproduction candidate genes (Zp2 and Zp3) reveal no contribution to reproductive isolation between bovine species. BMC Evol Biol 11:24","journal-title":"BMC Evol Biol"},{"key":"718_CR17","doi-asserted-by":"crossref","first-page":"2001","DOI":"10.1093\/genetics\/144.4.2001","volume":"144","author":"JM Cornuet","year":"1996","unstructured":"Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001\u20132014","journal-title":"Genetics"},{"key":"718_CR18","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1007\/s12686-011-9548-7","volume":"4","author":"D Earl","year":"2012","unstructured":"Earl D, vonHoldt B (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359\u2013361","journal-title":"Conserv Genet Resour"},{"key":"718_CR19","doi-asserted-by":"crossref","first-page":"2611","DOI":"10.1111\/j.1365-294X.2005.02553.x","volume":"14","author":"G Evanno","year":"2005","unstructured":"Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14:2611\u20132620","journal-title":"Mol Ecol"},{"key":"718_CR20","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1038\/hdy.2009.74","volume":"103","author":"L Excoffier","year":"2009","unstructured":"Excoffier L, Hofer T, Foll M (2009) Detecting loci under selection in a hierarchically structured population. Heredity 103:285\u2013298","journal-title":"Heredity"},{"key":"718_CR21","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1111\/j.1755-0998.2010.02847.x","volume":"10","author":"L Excoffier","year":"2010","unstructured":"Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564\u2013567","journal-title":"Mol Ecol Resour"},{"key":"718_CR22","doi-asserted-by":"crossref","first-page":"1567","DOI":"10.1093\/genetics\/164.4.1567","volume":"164","author":"D Falush","year":"2003","unstructured":"Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567\u20131587","journal-title":"Genetics"},{"key":"718_CR23","doi-asserted-by":"crossref","first-page":"1315","DOI":"10.4049\/jimmunol.181.2.1315","volume":"181","author":"A Ferrer-Admetlla","year":"2008","unstructured":"Ferrer-Admetlla A, Bosch E, Sikora M, Marqu\u00e8s-Bonet T, Ram\u00edrez-Soriano A, Muntasell A, Navarro A, Lazarus R, Calafell F, Bertranpetit J, Casals F (2008) Balancing selection is the main force shaping the evolution of innate immunity genes. J Immunol 181:1315\u20131322","journal-title":"J Immunol"},{"key":"718_CR24","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1534\/genetics.108.092221","volume":"180","author":"M Foll","year":"2008","unstructured":"Foll M, Gaggiotti O (2008) A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective. Genetics 180:977\u2013993","journal-title":"Genetics"},{"key":"718_CR25","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1101\/gr.082768.108","volume":"19","author":"M Fumagalli","year":"2009","unstructured":"Fumagalli M, Cagliani R, Pozzoli U, Riva S, Comi GP, Menozzi G, Bresolin N, Sironi M (2009) Widespread balancing selection and pathogen-driven selection at blood group antigen genes. Genome Res 19:199\u2013212","journal-title":"Genome Res"},{"key":"718_CR26","doi-asserted-by":"crossref","first-page":"1785","DOI":"10.1093\/genetics\/154.4.1785","volume":"154","author":"E Giuffra","year":"2000","unstructured":"Giuffra E, Kijas JMH, Amarger V, Carlborg \u00d6, Jeon J-T, Andersson L (2000) The Origin of the domestic pig: independent domestication and subsequent introgression. Genetics 154:1785\u20131791","journal-title":"Genetics"},{"key":"718_CR27","doi-asserted-by":"crossref","first-page":"856","DOI":"10.1111\/j.1365-294X.2012.05670.x","volume":"22","author":"DJ Goedbloed","year":"2013","unstructured":"Goedbloed DJ, Megens HJ, Van Hooft P, Herrero-Medrano JM, Lutz W, Alexandri P, Crooijmans RPMA, Groenen M, Van Wieren SE, Ydenberg RC, Prins HHT (2013) Genome-wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations. Mol Ecol 22:856\u2013866","journal-title":"Mol Ecol"},{"key":"718_CR28","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1038\/nature11622","volume":"491","author":"MAM Groenen","year":"2012","unstructured":"Groenen MAM, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens H-J, Li S, Larkin DM, Kim H, Frantz LAF, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi S-H, Chow W, Clark RC, Clee C, Crooijmans RPMA, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du Z-Q, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JGR, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu Z-L, Humphray SJ, Hunt T, Hornshoj H, Jeon J-T, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim J-H, Kim K-W, Kim T-H, Larson G, Lee K, Lee K-T, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Truong Nguyen D, Ni P, Oh S-J, Onteru S, Panitz F, Park E-W et al (2012) Analyses of pig genomes provide insight into porcine demography and evolution. Nature 491:393\u2013398","journal-title":"Nature"},{"key":"718_CR29","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1186\/1471-2164-13-107","volume":"13","author":"T Hofer","year":"2012","unstructured":"Hofer T, Foll M, Excoffier L (2012) Evolutionary forces shaping genomic islands of population differentiation in humans. BMC Genomics 13:107","journal-title":"BMC Genomics"},{"key":"718_CR30","doi-asserted-by":"crossref","first-page":"e26416","DOI":"10.1371\/journal.pone.0026416","volume":"6","author":"Y-Q Ji","year":"2011","unstructured":"Ji Y-Q, Wu D-D, Wu G-S, Wang G-D, Zhang Y-P (2011) Multi-locus analysis reveals a different pattern of genetic diversity for mitochondrial and nuclear DNA between wild and domestic pigs in East Asia. PLoS One 6:e26416","journal-title":"PLoS One"},{"key":"718_CR31","doi-asserted-by":"crossref","first-page":"e1000144","DOI":"10.1371\/journal.pgen.1000144","volume":"4","author":"C Kosiol","year":"2008","unstructured":"Kosiol C, Vina\u0159 T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A (2008) Patterns of positive selection in six mammalian genomes. PLoS Genet 4:e1000144","journal-title":"PLoS Genet"},{"key":"718_CR32","doi-asserted-by":"crossref","first-page":"1618","DOI":"10.1126\/science.1106927","volume":"307","author":"G Larson","year":"2005","unstructured":"Larson G, Dobney K, Albarella U, Fang M, Matisoo-Smith E, Robins J, Lowden S, Finlayson H, Brand T, Willerslev E, Rowley-Conwy P, Andersson L, Cooper A (2005) Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science 307:1618\u20131621","journal-title":"Science"},{"key":"718_CR33","doi-asserted-by":"crossref","first-page":"1578","DOI":"10.1126\/science.1234070","volume":"339","author":"EM Leffler","year":"2013","unstructured":"Leffler EM, Gao Z, Pfeifer S, S\u00e9gurel L, Auton A, Venn O, Bowden R, Bontrop R, Wall JD, Sella G, Donnelly P, McVean G, Przeworski M (2013) Multiple instances of ancient balancing selection shared between humans and chimpanzees. Science 339:1578\u20131582","journal-title":"Science"},{"key":"718_CR34","doi-asserted-by":"crossref","first-page":"e55891","DOI":"10.1371\/journal.pone.0055891","volume":"8","author":"A Manunza","year":"2013","unstructured":"Manunza A, Zidi A, Yeghoyan S, Balteanu VA, Carsai TC, Scherbakov O, Ram\u00edrez O, Eghbalsaied S, Castell\u00f3 A, Mercad\u00e9 A, Amills M (2013) A high throughput genotyping approach reveals distinctive autosomal genetic signatures for European and near eastern wild boar. PLoS One 8:e55891","journal-title":"PLoS One"},{"key":"718_CR35","first-page":"103","volume":"40","author":"H-J Megens","year":"2008","unstructured":"Megens H-J, Crooijmans R, Cristobal M, Hui X, Li N, Groenen M (2008) Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication. Genet Sel Evol 40:103\u2013128","journal-title":"Genet Sel Evol"},{"key":"718_CR36","doi-asserted-by":"crossref","first-page":"1643","DOI":"10.1093\/bioinformatics\/btn241","volume":"24","author":"C Morcillo-Suarez","year":"2008","unstructured":"Morcillo-Suarez C, Alegre J, Sangros R, Gazave E, de Cid R, Milne R, Amigo J, Ferrer-Admetlla A, Moreno-Estrada A, Gardner M, Casals F, P\u00e9rez-Lezaun A, Comas D, Bosch E, Calafell F, Bertranpetit J, Navarro A (2008) SNP analysis to results (SNPator): a web-based environment oriented to statistical genomics analyses upon SNP data. Bioinformatics 24:1643\u20131644","journal-title":"Bioinformatics"},{"key":"718_CR37","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1111\/j.1755-0998.2011.02987.x","volume":"11","author":"SR Narum","year":"2011","unstructured":"Narum SR, Hess JE (2011) Comparison of FST outlier tests for SNP loci under selection. Mol Ecol Resour 11:184\u2013194","journal-title":"Mol Ecol Resour"},{"key":"718_CR38","doi-asserted-by":"crossref","first-page":"2537","DOI":"10.1093\/bioinformatics\/bts460","volume":"28","author":"R Peakall","year":"2012","unstructured":"Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research\u2014an update. Bioinformatics 28:2537\u20139","journal-title":"Bioinformatics"},{"key":"718_CR39","doi-asserted-by":"crossref","DOI":"10.1079\/9780851995977.0000","volume-title":"Animal domestication and behavior","author":"EO Price","year":"2002","unstructured":"Price EO (2002) Animal domestication and behavior. CABI, Wallingford"},{"key":"718_CR40","doi-asserted-by":"crossref","first-page":"945","DOI":"10.1093\/genetics\/155.2.945","volume":"155","author":"JK Pritchard","year":"2000","unstructured":"Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945\u2013959","journal-title":"Genetics"},{"key":"718_CR41","doi-asserted-by":"crossref","first-page":"2061","DOI":"10.1093\/molbev\/msp118","volume":"26","author":"O Ram\u00edrez","year":"2009","unstructured":"Ram\u00edrez O, Ojeda A, Tom\u00e0s A, Gallardo D, Huang LS, Folch JM, Clop A, S\u00e1nchez A, Badaoui B, Hanotte O, Galman-Omitogun O, Makuza SM, Soto H, Cadillo J, Kelly L, Cho IC, Yeghoyan S, P\u00e9rez-Enciso M, Amills M (2009) Integrating Y-chromosome, mitochondrial, and autosomal data to analyze the origin of pig breeds. Mol Biol Evol 26:2061\u20132072","journal-title":"Mol Biol Evol"},{"key":"718_CR42","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.livsci.2007.08.017","volume":"116","author":"C Rehfeldt","year":"2008","unstructured":"Rehfeldt C, Henning M, Fiedler I (2008) Consequences of pig domestication for skeletal muscle growth and cellularity. Livest Sci 116:30\u201341","journal-title":"Livest Sci"},{"key":"718_CR43","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.vetmic.2010.02.028","volume":"145","author":"G Reiner","year":"2010","unstructured":"Reiner G, Bronnert B, Hohloch C, Fresen C, Haack I, Willems H, Reinacher M (2010) Qualitative and quantitative distribution of PCV2 in wild boars and domestic pigs in Germany. Vet Microbiol 145:1\u20138","journal-title":"Vet Microbiol"},{"key":"718_CR44","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1046\/j.1471-8286.2003.00566.x","volume":"4","author":"NA Rosenberg","year":"2004","unstructured":"Rosenberg NA (2004) Distruct: a program for the graphical display of population structure. Mol Ecol Notes 4:137\u2013138","journal-title":"Mol Ecol Notes"},{"key":"718_CR45","doi-asserted-by":"crossref","first-page":"8641","DOI":"10.1073\/pnas.0700643104","volume":"104","author":"J Ross-Ibarra","year":"2007","unstructured":"Ross-Ibarra J, Morrell PL, Gaut BS (2007) Plant domestication, a unique opportunity to identify the genetic basis of adaptation. P Natl Acad Sci U S A 104:8641\u20138648","journal-title":"P Natl Acad Sci U S A"},{"key":"718_CR46","doi-asserted-by":"crossref","first-page":"19529","DOI":"10.1073\/pnas.1217149109","volume":"109","author":"C-J Rubin","year":"2012","unstructured":"Rubin C-J, Megens H-J, Barrio AM, Maqbool K, Sayyab S, Schwochow D, Wang C, Carlborg \u00d6, Jern P, J\u00f8rgensen CB, Archibald AL, Fredholm M, Groenen MAM, Andersson L (2012) Strong signatures of selection in the domestic pig genome. Proc Natl Acad Sci 109:19529\u201319536","journal-title":"Proc Natl Acad Sci"},{"key":"718_CR47","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1038\/nature08832","volume":"464","author":"C-J Rubin","year":"2010","unstructured":"Rubin C-J, Zody MC, Eriksson J, Meadows JRS, Sherwood E, Webster MT, Jiang L, Ingman M, Sharpe T, Ka S, Hallbook F, Besnier F, Carlborg O, Bed\/'hom B, Tixier-Boichard M, Jensen P, Siegel P, Lindblad-Toh K, Andersson L (2010) Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 464:587\u2013591","journal-title":"Nature"},{"key":"718_CR48","doi-asserted-by":"crossref","first-page":"1614","DOI":"10.1126\/science.1124309","volume":"312","author":"PC Sabeti","year":"2006","unstructured":"Sabeti PC, Schaffner SF, Fry B, Lohmueller J, Varilly P, Shamovsky O, Palma A, Mikkelsen TS, Altshuler D, Lander ES (2006) Positive natural selection in the human lineage. Science 312:1614\u20131620","journal-title":"Science"},{"key":"718_CR49","doi-asserted-by":"crossref","first-page":"1745","DOI":"10.1111\/j.1365-294X.2008.03703.x","volume":"17","author":"M Scandura","year":"2008","unstructured":"Scandura M, Iacolina L, Crestanello B, Pecchioli E, Di Benedetto MF, Russo V, Davoli R, Apollonio M, Bertorelle G (2008) Ancient vs. recent processes as factors shaping the genetic variation of the European wild boar: are the effects of the last glaciation still detectable? Mol Ecol 17:1745\u20131762","journal-title":"Mol Ecol"},{"issue":"Pt 5","key":"718_CR50","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1038\/sj.hdy.6885180","volume":"82","author":"PE Smouse","year":"1999","unstructured":"Smouse PE, Peakall R (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Hered (Edinb) 82(Pt 5):561\u201373","journal-title":"Hered (Edinb)"},{"key":"718_CR51","doi-asserted-by":"crossref","first-page":"2647","DOI":"10.1534\/genetics.105.050179","volume":"172","author":"W Stephan","year":"2006","unstructured":"Stephan W, Song YS, Langley CH (2006) The hitchhiking effect on linkage disequilibrium between linked neutral loci. Genetics 172:2647\u20132663","journal-title":"Genetics"},{"key":"718_CR52","doi-asserted-by":"crossref","first-page":"1299","DOI":"10.1038\/nature04226","volume":"437","author":"The International HapMap Consortium","year":"2005","unstructured":"The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437:1299\u20131320","journal-title":"Nature"},{"key":"718_CR53","doi-asserted-by":"crossref","first-page":"e1002343","DOI":"10.1371\/journal.pgen.1002343","volume":"7","author":"AK Turner","year":"2011","unstructured":"Turner AK, Begon M, Jackson JA, Bradley JE, Paterson S (2011) Genetic diversity in cytokines associated with immune variation and resistance to multiple pathogens in a natural rodent population. PLoS Genet 7:e1002343","journal-title":"PLoS Genet"},{"key":"718_CR54","doi-asserted-by":"crossref","first-page":"1632","DOI":"10.1111\/j.1365-294X.2012.05501.x","volume":"21","author":"AK Turner","year":"2012","unstructured":"Turner AK, Begon M, Jackson JA, Paterson S (2012) Evidence for selection at cytokine loci in a natural population of field voles (Microtus agrestis). Mol Ecol 21:1632\u20131646","journal-title":"Mol Ecol"},{"key":"718_CR55","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1111\/j.1365-2052.2011.02222.x","volume":"43","author":"B Asch van","year":"2012","unstructured":"van Asch B, Pereira F, Santos LS, Carneiro J, Santos N, Amorim A (2012) Mitochondrial lineages reveal intense gene flow between Iberian wild boars and South Iberian pig breeds. Anim Genet 43:35\u201341","journal-title":"Anim Genet"},{"key":"718_CR56","doi-asserted-by":"crossref","first-page":"898","DOI":"10.1038\/nature08837","volume":"464","author":"BM vonHoldt","year":"2010","unstructured":"vonHoldt BM, Pollinger JP, Lohmueller KE, Han E, Parker HG, Quignon P, Degenhardt JD, Boyko AR, Earl DA, Auton A, Reynolds A, Bryc K, Brisbin A, Knowles JC, Mosher DS, Spady TC, Elkahloun A, Geffen E, Pilot M, Jedrzejewski W, Greco C, Randi E, Bannasch D, Wilton A, Shearman J, Musiani M, Cargill M, Jones PG, Qian Z, Huang W, Ding Z-L, Y-p Z, Bustamante CD, Ostrander EA, Novembre J, Wayne RK (2010) Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature 464:898\u2013902","journal-title":"Nature"},{"key":"718_CR57","doi-asserted-by":"crossref","first-page":"1358","DOI":"10.2307\/2408641","volume":"38","author":"BS Weir","year":"1984","unstructured":"Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358\u20131370","journal-title":"Evolution"},{"key":"718_CR58","doi-asserted-by":"crossref","first-page":"10364","DOI":"10.1073\/pnas.1333957100","volume":"100","author":"SN White","year":"2003","unstructured":"White SN, Taylor KH, Abbey CA, Gill CA, Womack JE (2003) Haplotype variation in bovine Toll-like receptor 4 and computational prediction of a positively selected ligand-binding domain. P Natl Acad Sci U S A 100:10364\u201310369","journal-title":"P Natl Acad Sci U S A"},{"key":"718_CR59","doi-asserted-by":"crossref","first-page":"e1003453","DOI":"10.1371\/journal.pgen.1003453","volume":"9","author":"S Wilkinson","year":"2013","unstructured":"Wilkinson S, Lu ZH, Megens H-J, Archibald AL, Haley C, Jackson IJ, Groenen MAM, Crooijmans RPMA, Ogden R, Wiener P (2013) Signatures of diversifying selection in European pig breeds. PLoS Genet 9:e1003453","journal-title":"PLoS Genet"},{"key":"718_CR60","doi-asserted-by":"crossref","first-page":"2172","DOI":"10.1093\/molbev\/msq104","volume":"27","author":"G Wlasiuk","year":"2010","unstructured":"Wlasiuk G, Nachman MW (2010) Adaptation and constraint at toll-like receptors in primates. Mol Biol Evol 27:2172\u20132186","journal-title":"Mol Biol Evol"}],"container-title":["Immunogenetics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00251-013-0718-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00251-013-0718-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00251-013-0718-5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,2,28]],"date-time":"2022-02-28T12:28:18Z","timestamp":1646051298000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00251-013-0718-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,7,12]]},"references-count":60,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2013,10]]}},"alternative-id":["718"],"URL":"https:\/\/doi.org\/10.1007\/s00251-013-0718-5","relation":{},"ISSN":["0093-7711","1432-1211"],"issn-type":[{"value":"0093-7711","type":"print"},{"value":"1432-1211","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,7,12]]}}}