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PhAEV1 was detected by both cellulose affinity chromatography of dsRNA and high-throughput sequencing of total RNA, and its presence and sequence were confirmed by RT-PCR and Sanger sequencing. The PhAEV1 genome, 12,820 nucleotides (nt) in length, was predicted to encode a single large polyprotein with the catalytic core domain of viral (superfamily 1) RNA helicase (HEL, amino acid [aa] positions 1,287-1,531), glycosyltransferase (GT, aa positions ca. 2,800-3,125), and RNA-directed RNA polymerase (RdRp, aa positions 3,875-4,112). PhAEV1 is the most similar to Phytophthora cactorum alphaendornavirus 3, sharing 39.4% and 39.1% nt and aa sequence identity, respectively. In addition to the first 5\u2032-terminal AUG codon, three additional in-frame methionine codons were found in close proximity (nt 14-16, 96-98, and 176-178), suggesting potential additional translation initiation sites. Conserved RdRp motifs (A-E) similar to those detected in related endornaviruses were identified in PhAEV1, as well as in several previously described alphaendornaviruses from other <jats:italic>Phytophthora<\/jats:italic> species in which these motifs had not been identified previously. Phylogenetic analysis showed that PhAEV1 clusters with members of the genus <jats:italic>Alphaendornavirus<\/jats:italic> in the family <jats:italic>Endornaviridae<\/jats:italic> and is basal to two other alphaendornaviruses described from another oomycete, <jats:italic>Phytophthora cactorum<\/jats:italic>. PhAEV1 is the first virus reported in <jats:italic>P. heveae<\/jats:italic>.<\/jats:p>","DOI":"10.1007\/s00705-023-05786-7","type":"journal-article","created":{"date-parts":[[2023,5,11]],"date-time":"2023-05-11T10:22:20Z","timestamp":1683800540000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Sequence and phylogenetic analysis of a novel alphaendornavirus, the first virus described from the oomycete plant pathogen Phytophthora heveae"],"prefix":"10.1007","volume":"168","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5663-9231","authenticated-orcid":false,"given":"Milica","family":"Raco","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2034-0718","authenticated-orcid":false,"given":"Thomas","family":"Jung","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2219-8647","authenticated-orcid":false,"given":"Marilia","family":"Horta Jung","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2345-2398","authenticated-orcid":false,"given":"Nguyen Minh","family":"Chi","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6613-5405","authenticated-orcid":false,"given":"Leticia","family":"Botella","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0097-9856","authenticated-orcid":false,"given":"Nobuhiro","family":"Suzuki","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2023,5,11]]},"reference":[{"key":"5786_CR1","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1111\/ppa.12564","volume":"66","author":"T Jung","year":"2017","unstructured":"Jung T, Chang TT, Bakonyi J et al (2017) Diversity of Phytophthora species in natural ecosystems of Taiwan and association with disease symptoms. 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