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This remote environment of difficult accessibility exhibits extreme conditions, including high pressure, steep temperature- and redox gradients, limited availability of oxygen and complete darkness. In this study, we analysed the genomes of three aerobic strains belonging to the phylum <jats:italic>Planctomycetota<\/jats:italic> that were isolated from two deep-sea iron- rich hydroxide deposits with low temperature diffusive vents. The vents are located in the Arctic and Pacific Ocean at a depth of 600 and 1,734\u00a0m below sea level, respectively. The isolated strains Pr1d<jats:sup>T<\/jats:sup>, K2D and TBK1r were analyzed with a focus on genome-encoded features that allow phenotypical adaptations to the low temperature iron-rich deep-sea environment. The comparison with genomes of closely related surface-inhabiting counterparts indicates that the deep-sea isolates do not differ significantly from members of the phylum <jats:italic>Planctomycetota<\/jats:italic> inhabiting other habitats, such as macroalgae biofilms and the ocean surface waters. Despite inhabiting extreme environments, our \u201cdeep and dark\u201d-strains revealed a mostly non-extreme genome biology.<\/jats:p>","DOI":"10.1007\/s10482-024-02041-0","type":"journal-article","created":{"date-parts":[[2024,11,25]],"date-time":"2024-11-25T15:40:38Z","timestamp":1732549238000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Comparative genomic analyses of aerobic planctomycetes isolated from the deep sea and the ocean surface"],"prefix":"10.1007","volume":"118","author":[{"given":"Lise","family":"\u00d8vre\u00e5s","sequence":"first","affiliation":[]},{"given":"Nicolai","family":"Kallscheuer","sequence":"additional","affiliation":[]},{"given":"Rita","family":"Calisto","sequence":"additional","affiliation":[]},{"given":"Nicola","family":"Bordin","sequence":"additional","affiliation":[]},{"given":"Julia E.","family":"Storesund","sequence":"additional","affiliation":[]},{"given":"Christian","family":"Jogler","sequence":"additional","affiliation":[]},{"given":"Damien","family":"Devos","sequence":"additional","affiliation":[]},{"given":"Olga","family":"Lage","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2024,11,25]]},"reference":[{"key":"2041_CR1","doi-asserted-by":"publisher","first-page":"W276","DOI":"10.1093\/nar\/gkz282","volume":"47","author":"M Alanjary","year":"2019","unstructured":"Alanjary M, Steinke K, Ziemert N (2019) AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential. 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