{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T12:34:19Z","timestamp":1770813259921,"version":"3.50.1"},"reference-count":48,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2018,1,18]],"date-time":"2018-01-18T00:00:00Z","timestamp":1516233600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["Grant SFRH\/BD\/42837\/2008"],"award-info":[{"award-number":["Grant SFRH\/BD\/42837\/2008"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Mol Biol Rep"],"published-print":{"date-parts":[[2018,4]]},"DOI":"10.1007\/s11033-018-4146-3","type":"journal-article","created":{"date-parts":[[2018,1,18]],"date-time":"2018-01-18T07:57:09Z","timestamp":1516262229000},"page":"133-142","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["Molecular characterization of Fagaceae species using inter-primer binding site (iPBS) markers"],"prefix":"10.1007","volume":"45","author":[{"given":"Jo\u00e3o Paulo","family":"Coutinho","sequence":"first","affiliation":[]},{"given":"Ana","family":"Carvalho","sequence":"additional","affiliation":[]},{"given":"Antonio","family":"Mart\u00edn","sequence":"additional","affiliation":[]},{"given":"Jos\u00e9","family":"Lima-Brito","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2018,1,18]]},"reference":[{"key":"4146_CR1","doi-asserted-by":"publisher","first-page":"479","DOI":"10.1146\/annurev.genet.33.1.479","volume":"33","author":"A Kumar","year":"1999","unstructured":"Kumar A, Bennetzen JL (1999) Plant retrotransposons. Annu Rev Genet 33:479:532","journal-title":"Annu Rev Genet"},{"key":"4146_CR2","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1007\/s10681-004-3179-y","volume":"139","author":"F Sabot","year":"2004","unstructured":"Sabot F, Simon D, Bernard M (2004) Plant transposable elements, with an emphasis on grass species. Euphytica 139:227\u2013247","journal-title":"Euphytica"},{"key":"4146_CR3","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1186\/1471-2229-10-265","volume":"10","author":"F Zedek","year":"2010","unstructured":"Zedek F, Smerda J, Smarda P, Bures P (2010) Correlated evolution of LTR retrotransposons and genome size in the genus Eleocharis. BMC Plant Biol 10:265","journal-title":"BMC Plant Biol"},{"key":"4146_CR4","doi-asserted-by":"publisher","first-page":"119","DOI":"10.3832\/ifor0501-002","volume":"2","author":"G Emiliani","year":"2008","unstructured":"Emiliani G, Paffetti D, Giannini R (2008) Identification and molecular characterization of LTR and LINE retrotransposable elements in Fagus sylvatica L. iForest 2:119\u2013126","journal-title":"iForest"},{"key":"4146_CR5","doi-asserted-by":"publisher","first-page":"348","DOI":"10.1139\/g2012-020","volume":"55","author":"S Alves","year":"2012","unstructured":"Alves S, Ribeiro T, In\u00e1cio V, Rocheta M, Morais-Cec\u00edlio L (2012) Genomic organization and dynamics of repetitive DNA sequences in representatives of three Fagaceae genera. Genome 55:348\u2013359","journal-title":"Genome"},{"key":"4146_CR6","first-page":"161","volume-title":"Genome mapping and molecular breeding in plants","author":"A Kremer","year":"2007","unstructured":"Kremer A, Casasoli M, Barreneche T et al (2007) Fagaceae trees. In: Kole C (ed) Genome mapping and molecular breeding in plants, vol\u00a07. Springer, Berlin, pp\u00a0161\u2013187"},{"key":"4146_CR7","doi-asserted-by":"publisher","first-page":"432","DOI":"10.1186\/1756-0500-5-432","volume":"5","author":"M Rocheta","year":"2012","unstructured":"Rocheta M, Carvalho L, Viegas W, Morais-Cec\u00edlio L (2012) Corky, a gypsy-like retrotransposon is differentially transcribed in Quercus suber tissues. BMC Res Notes 5:432","journal-title":"BMC Res Notes"},{"key":"4146_CR8","doi-asserted-by":"publisher","first-page":"726","DOI":"10.1080\/14620316.2014.11513144","volume":"89","author":"C Qing-Qin","year":"2014","unstructured":"Qing-Qin C, Yi-Chen J, Xing-Liang L, Yuan-Yue S, Yu X, Ke-Feng F, Qing Z, Yanyan Z, Ling Q (2014) CmRT1, a Ty3-gypsy-like retrotransposon in Castanea mollissima, is associated with a short-catkin mutation. J Hortic Sci Biotechnol 89:726\u2013732","journal-title":"J Hortic Sci Biotechnol"},{"key":"4146_CR9","doi-asserted-by":"publisher","first-page":"461","DOI":"10.1007\/BF03208875","volume":"51","author":"M Carvalho","year":"2010","unstructured":"Carvalho M, Ribeiro T, Viegas W, Morais-Cec\u00edlio L, Rocheta M (2010) Presence of env-like sequences in Quercus suber retrotransposons. J Appl Genet 51:461\u2013467","journal-title":"J Appl Genet"},{"key":"4146_CR10","first-page":"249","volume":"50","author":"J Rohde","year":"1996","unstructured":"Rohde J (1996) A novel PCR-based DNA marker technology called inverse sequence tagged repeat (ISTR) analysis. J Genet Breed 50:249\u2013261","journal-title":"J Genet Breed"},{"key":"4146_CR11","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1007\/s004380050372","volume":"253","author":"R Waugh","year":"1997","unstructured":"Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BBT, Powell W (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687\u2013694","journal-title":"Mol Gen Genet"},{"key":"4146_CR12","doi-asserted-by":"publisher","first-page":"643","DOI":"10.1046\/j.1365-313x.1998.00334.x","volume":"16","author":"A Flavell","year":"1998","unstructured":"Flavell A, Knox MR, Pearce SR, Ellis THN (1998) Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J 16:643\u2013650","journal-title":"Plant J"},{"key":"4146_CR13","doi-asserted-by":"publisher","first-page":"704","DOI":"10.1007\/s001220051124","volume":"98","author":"R Kalendar","year":"1999","unstructured":"Kalendar R, Grob T, Regina M, Suoniemi A, Schulman A (1999) IRAP and REMAP: two retrotransposon-based DNA fingerprinting techniques. Theor Appl Genet 98:704\u2013711","journal-title":"Theor Appl Genet"},{"key":"4146_CR14","doi-asserted-by":"publisher","first-page":"1419","DOI":"10.1007\/s00122-010-1398-2","volume":"121","author":"R Kalendar","year":"2010","unstructured":"Kalendar R, Antonius K, Sm\u00fdkal P, Schulman AH (2010) iPBS: a universal method for DNA fingerprinting and retrotransposon isolation. Theor Appl Genet 121:1419\u20131430","journal-title":"Theor Appl Genet"},{"key":"4146_CR15","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1007\/s00122-012-1825-7","volume":"125","author":"KM Seibt","year":"2012","unstructured":"Seibt KM, Wenke T, Wollrab C, Junghans H, Muders K, Dehmer KJ, Diekmann K, Schmidt T (2012) Development and application of SINE-based markers for genotyping of potato varieties. Theor Appl Genet 125:185\u2013196","journal-title":"Theor Appl Genet"},{"key":"4146_CR16","doi-asserted-by":"publisher","first-page":"7221","DOI":"10.1007\/s11033-012-1553-8","volume":"39","author":"MK Biswas","year":"2012","unstructured":"Biswas MK, Chai L, Qiang X, Deng X (2012) Generation, functional analysis and utility of Citrus grandis EST from a flower-derived cDNA library. Mol Biol Rep 39:7221\u20137235","journal-title":"Mol Biol Rep"},{"key":"4146_CR17","doi-asserted-by":"publisher","first-page":"176","DOI":"10.1016\/j.gene.2014.09.034","volume":"552","author":"L Alikhani","year":"2014","unstructured":"Alikhani L, Rahmani M-S, Shabanian N, Badakhshan H, Khadivi-Khub A (2014) Genetic variability and structure of Quercus brantii assessed by ISSR, IRAP and SCoT markers. Gene 552:176\u2013183","journal-title":"Gene"},{"key":"4146_CR18","doi-asserted-by":"publisher","first-page":"800","DOI":"10.1007\/s11295-014-0800-7","volume":"11","author":"M-S Rahmani","year":"2015","unstructured":"Rahmani M-S, Alikhani L, Shabanian N, Khadivi-Khub A (2015) Genetic differentiation in Quercus infectoria from northwest of Iran revealed by different nuclear markers. Tree Genet Genomes 11:800","journal-title":"Tree Genet Genomes"},{"key":"4146_CR19","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1186\/gb-2004-5-6-225","volume":"5","author":"ER Havecker","year":"2004","unstructured":"Havecker ER, Gao X, Voytas DF (2004) The diversity of LTR retrotransposons. Genome Biol 5:225","journal-title":"Genome Biol"},{"key":"4146_CR20","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1016\/j.cpb.2014.09.001","volume":"1","author":"Y Monden","year":"2014","unstructured":"Monden Y, Yamaguchi K, Tahara M (2014) Application of iPBS in high-throughput sequencing for the development of retrotransposon-based molecular markers. Curr Plant Biol 1:40\u201344","journal-title":"Curr Plant Biol"},{"key":"4146_CR21","first-page":"115","volume":"9","author":"A Gail\u012bte","year":"2011","unstructured":"Gail\u012bte A, Ievinsh G, Ru\u0146\u0123is D (2011) Genetic diversity analysis of Latvian and Estonian Saussurea esthonica populations. Environ Exp Bot 9:115\u2013119","journal-title":"Environ Exp Bot"},{"key":"4146_CR22","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1016\/j.bse.2013.10.008","volume":"52","author":"G Da-Long","year":"2014","unstructured":"Da-Long G, Ming-Xiao G, Xiao-Gai H, Guo-Hai Z (2014) Molecular diversity analysis of grape varieties based on iPBS markers. Biochem Syst Ecol 52:27\u201332","journal-title":"Biochem Syst Ecol"},{"key":"4146_CR23","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1111\/jph.12276","volume":"163","author":"A Pourmahdi","year":"2015","unstructured":"Pourmahdi A, Taheri P (2015) Genetic diversity of Thanatephorus cucumeris infecting tomato in Iran. J Phytopathol 163:19\u201332","journal-title":"J Phytopathol"},{"key":"4146_CR24","doi-asserted-by":"publisher","first-page":"162","DOI":"10.1016\/j.bse.2014.12.002","volume":"58","author":"FS Baloch","year":"2015","unstructured":"Baloch FS, Derya M, Andeden EE, Alsaleh A, C\u00f6mertpay G, Kilian B, \u00d6zkan H (2015) Inter-primer binding site retrotranspososn and inter-simple sequence repeat diversity among wild Lens species. Biochem Syst Ecol 58:162\u2013168","journal-title":"Biochem Syst Ecol"},{"key":"4146_CR25","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1016\/j.scienta.2014.03.010","volume":"170","author":"C Fang-Yong","year":"2014","unstructured":"Fang-Yong C, Ji-Hong L (2014) Germplasm genetic diversity of Myrica rubra in Zhejiang Province studied using inter-primer binding site and start codon-targeted polymorphism markers. Sci Hortic 170:169\u2013175","journal-title":"Sci Hortic"},{"key":"4146_CR26","doi-asserted-by":"publisher","first-page":"828","DOI":"10.1134\/S1021443714060107","volume":"61","author":"G Kartal-Alacam","year":"2014","unstructured":"Kartal-Alacam G, Yilmaz S, Marakli S, Gozukirmizi N (2014) Sukkula retrotransposon insertion polymorphisms in barley. Russ J Plant Physiol 61:828\u2013833","journal-title":"Russ J Plant Physiol"},{"key":"4146_CR27","doi-asserted-by":"publisher","first-page":"672","DOI":"10.1186\/1471-2164-13-672","volume":"13","author":"T Nakatsuka","year":"2012","unstructured":"Nakatsuka T, Yamada E, Saito M, Hikage T, Ushiku Y, Nishihara M (2012) Construction of the first genetic linkage map of Japanese gentian (Gentianaceae). BMC Genom 13:672","journal-title":"BMC Genom"},{"key":"4146_CR28","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1186\/1746-4811-9-6","volume":"9","author":"P Poczai","year":"2013","unstructured":"Poczai P, Varga I, Laos M, Cseh A, Bell N, Valkonen JPT, Hyv\u00f6nen J (2013) Advances in plant gene-targeted and functional markers: a review. Plant Methods 9:6","journal-title":"Plant Methods"},{"key":"4146_CR29","first-page":"11","volume":"19","author":"JJ Doyle","year":"1987","unstructured":"Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11\u201315","journal-title":"Phytochem Bull"},{"key":"4146_CR30","volume-title":"POPGENE Version 1.32, the user-friendly shareware for population genetic analysis","author":"FC Yeh","year":"1999","unstructured":"Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1999) POPGENE Version 1.32, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton"},{"key":"4146_CR31","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1093\/genetics\/89.3.583","volume":"89","author":"M Nei","year":"1978","unstructured":"Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individual. Genetics 89:583\u2013590","journal-title":"Genetics"},{"key":"4146_CR32","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1038\/236181a0","volume":"236","author":"RC Lewontin","year":"1972","unstructured":"Lewontin RC (1972) Testing the theory of natural selection. Nature 236:181\u2013182","journal-title":"Nature"},{"key":"4146_CR33","volume-title":"NTSYS-pc ver. 2.02. Numerical taxonomy and multivariate analysis system","author":"FJ Rohlf","year":"1998","unstructured":"Rohlf FJ (1998) NTSYS-pc ver. 2.02. Numerical taxonomy and multivariate analysis system. Exeter Publishing, Setauket"},{"key":"4146_CR34","unstructured":"Yap IV, Nelson RJ (1996) WinBoot: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrogram. Discussion Paper Series 14. International Rice Research Institute, Manila"},{"key":"4146_CR35","doi-asserted-by":"crossref","first-page":"945","DOI":"10.1093\/genetics\/155.2.945","volume":"155","author":"JK Pritchard","year":"2000","unstructured":"Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945\u2013959","journal-title":"Genetics"},{"key":"4146_CR36","unstructured":"Pritchard JK, Wen X, Falush D (2010) Documentation for STRUCTURE software: version 2.3. University of Chicago. http:\/\/pritchardlab.stanford.edu\/structure_software\/release_versions\/v2.3.4\/ structure_doc.pdf . Accessed 5 Mar 2015"},{"key":"4146_CR37","doi-asserted-by":"publisher","first-page":"783","DOI":"10.1111\/j.1558-5646.1985.tb00420.x","volume":"39","author":"J Felsenstein","year":"1985","unstructured":"Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783\u2013791","journal-title":"Evolution"},{"key":"4146_CR38","doi-asserted-by":"publisher","first-page":"977","DOI":"10.1007\/s11295-014-0736-y","volume":"10","author":"C Si-Chong","year":"2014","unstructured":"Si-Chong C, Cannon CH, Chai-Shian K, Jia-Jia L, Galbraith DW (2014) Genome size variation in the Fagaceae and its implications for trees. Tree Genet Genomes 10:977\u2013988","journal-title":"Tree Genet Genomes"},{"key":"4146_CR39","doi-asserted-by":"publisher","first-page":"247","DOI":"10.1016\/j.bse.2014.02.012","volume":"54","author":"JP Coutinho","year":"2014","unstructured":"Coutinho JP, Carvalho A, Lima-Brito J (2014) Genetic diversity assessment and estimation of phylogenetic relationships among 26 Fagaceae species using ISSRs. Biochem Syst Ecol 54:247\u2013256","journal-title":"Biochem Syst Ecol"},{"key":"4146_CR40","doi-asserted-by":"publisher","first-page":"plu079","DOI":"10.1093\/aobpla\/plu079","volume":"7","author":"JP Coutinho","year":"2015","unstructured":"Coutinho JP, Carvalho A, Lima-Brito J (2015) Taxonomic and ecological discrimination of Fagaceae species based on internal transcribed spacer polymerase chain reaction-restriction fragment length polymorphism. AoB PLANTS 7. plu079","journal-title":"AoB PLANTS"},{"key":"4146_CR41","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1007\/s00606-016-1281-y","volume":"302","author":"JP Coutinho","year":"2016","unstructured":"Coutinho JP, Carvalho A, Mart\u00edn A, Ribeiro T, Morais-Cec\u00edlio L, Lima-Brito J (2016) Oak ribosomal DNA: characterization by FISH and polymorphism assessed by IGS PCR-RFLP. Plant Syst Evol 302:527\u2013544","journal-title":"Plant Syst Evol"},{"key":"4146_CR42","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1007\/BF00984917","volume":"211","author":"R Samuel","year":"1998","unstructured":"Samuel R, Bachmair A, Jobst J, Ehrendorfer F (1998) ITS sequences from nuclear rDNA suggest unexpected phylogenetic relationships between Euro-Mediterranean, East Asiatic and North American taxa of Quercus (Fagaceae). Plant Syst Evol 211:129\u2013139","journal-title":"Plant Syst Evol"},{"key":"4146_CR43","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1002\/tax.592002","volume":"59","author":"T Denk","year":"2010","unstructured":"Denk T, Grimm GW (2010) The oaks of western Eurasia: traditional classifications and evidence from two nuclear markers. Taxon 59:351\u2013366","journal-title":"Taxon"},{"key":"4146_CR44","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1007\/s11295-012-0498-3","volume":"8","author":"A Kremer","year":"2012","unstructured":"Kremer A, Abbott AG, Carlson JE, Manos PS, Plomion C, Sisco P, Staton ME, Ueno S, Vendramin GG (2012) Genomics of Fagaceae. Tree Genet Genomes 8:583\u2013610","journal-title":"Tree Genet Genomes"},{"key":"4146_CR45","doi-asserted-by":"publisher","first-page":"355","DOI":"10.1016\/j.ympev.2004.10.014","volume":"34","author":"R Bellarosa","year":"2005","unstructured":"Bellarosa R, Simeone MC, Papini A, Schirone B (2005) Utility of ITS sequence data for phylogenetic reconstruction of Italian Quercus spp. Mol Phylogenet Evol 34:355\u2013370","journal-title":"Mol Phylogenet Evol"},{"key":"4146_CR46","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1006\/mpev.1999.0614","volume":"12","author":"PS Manos","year":"1999","unstructured":"Manos PS, Doyle JJ, Nixon KC (1999) Phylogeny, biogeography and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae). Mol Phylogenet Evol 12:333\u2013349","journal-title":"Mol Phylogenet Evol"},{"key":"4146_CR47","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1007\/s11295-012-0576-6","volume":"9","author":"F Guang-Chen","year":"2013","unstructured":"Guang-Chen F, Blackmon BP, Staton ME et al (2013) A physical map of the Chinese chestnut (Castanea mollissima) genome and its integration with the genetic map. Tree Genet Genomes 9:525\u2013537","journal-title":"Tree Genet Genomes"},{"key":"4146_CR48","doi-asserted-by":"publisher","first-page":"254","DOI":"10.1111\/1755-0998.12425","volume":"16","author":"C Plomion","year":"2016","unstructured":"Plomion C, Aury JM, Amselem J, Alaeitabar T et al (2016) Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Mol Ecol Resour 16:254\u2013265","journal-title":"Mol Ecol Resour"}],"container-title":["Molecular Biology Reports"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11033-018-4146-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11033-018-4146-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11033-018-4146-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,8,12]],"date-time":"2022-08-12T20:19:44Z","timestamp":1660335584000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11033-018-4146-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,1,18]]},"references-count":48,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2018,4]]}},"alternative-id":["4146"],"URL":"https:\/\/doi.org\/10.1007\/s11033-018-4146-3","relation":{},"ISSN":["0301-4851","1573-4978"],"issn-type":[{"value":"0301-4851","type":"print"},{"value":"1573-4978","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,1,18]]},"assertion":[{"value":"22 December 2016","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"10 January 2018","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 January 2018","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"The authors declare that they have no conflict of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}