{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T18:12:32Z","timestamp":1771697552469,"version":"3.50.1"},"reference-count":42,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2016,12,21]],"date-time":"2016-12-21T00:00:00Z","timestamp":1482278400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Nonlinear Dyn"],"published-print":{"date-parts":[[2017,4]]},"DOI":"10.1007\/s11071-016-3294-z","type":"journal-article","created":{"date-parts":[[2016,12,21]],"date-time":"2016-12-21T10:16:28Z","timestamp":1482315388000},"page":"1051-1057","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Bond graph and memristor approach to DNA analysis"],"prefix":"10.1007","volume":"88","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4274-4879","authenticated-orcid":false,"given":"J. Tenreiro","family":"Machado","sequence":"first","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,12,21]]},"reference":[{"key":"3294_CR1","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780198567097.001.0001","volume-title":"DNA Topology","author":"AD Bates","year":"2005","unstructured":"Bates, A.D., Maxwell, A.: DNA Topology, 2nd edn. Oxford University Press, Oxford (2005)","edition":"2"},{"key":"3294_CR2","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-84882-882-7","volume-title":"Bond Graph Methodology: Development and Analysis of Multidisciplinary Dynamic System Models","author":"W Borutzky","year":"2010","unstructured":"Borutzky, W.: Bond Graph Methodology: Development and Analysis of Multidisciplinary Dynamic System Models. Springer, London (2010)"},{"issue":"1","key":"3294_CR3","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1016\/0016-0032(82)90050-3","volume":"314","author":"PC Breedveld","year":"1982","unstructured":"Breedveld, P.C.: Thermodynamic bond graphs and the problem of thermal lnertance. J. Frankl. Inst. 314(1), 15\u201340 (1982)","journal-title":"J. Frankl. Inst."},{"key":"3294_CR4","unstructured":"Brewer, J.W.: Bond graphs of microeconomic systems. In: 75-WA\/Aut-8. American Society of Mechanical Engineering, Houston, USA (1975)"},{"issue":"6","key":"3294_CR5","doi-asserted-by":"crossref","first-page":"468","DOI":"10.1109\/TSMC.1977.4309745","volume":"7","author":"JW Brewer","year":"1977","unstructured":"Brewer, J.W.: Structure and cause and effect relations in social systems simulations. IEEE Trans. Syst. Man Cybern. 7(6), 468\u2013474 (1977)","journal-title":"IEEE Trans. Syst. Man Cybern."},{"issue":"5\/6","key":"3294_CR6","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1016\/0016-0032(91)90048-8","volume":"328","author":"JW Brewer","year":"1991","unstructured":"Brewer, J.W.: Progress in the bond graph representations of economics and population dynamics. J. Frankl. Inst. 328(5\/6), 675\u2013696 (1991)","journal-title":"J. Frankl. Inst."},{"issue":"4","key":"3294_CR7","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1016\/0016-0032(82)90085-0","volume":"313","author":"JW Brewer","year":"1982","unstructured":"Brewer, J.W., Craig, P.P.: Bilinear, dynamic single-ports and bond graphs of economic systems. J. Frankl. Inst. 313(4), 185\u2013196 (1982)","journal-title":"J. Frankl. Inst."},{"key":"3294_CR8","doi-asserted-by":"crossref","DOI":"10.7312\/care17084","volume-title":"Junk DNA: A Journey Through the Dark Matter of the Genome","author":"N Carey","year":"2015","unstructured":"Carey, N.: Junk DNA: A Journey Through the Dark Matter of the Genome. Columbia University Press, New York (2015)"},{"issue":"4","key":"3294_CR9","doi-asserted-by":"publisher","first-page":"765","DOI":"10.1007\/s00339-011-6264-9","volume":"102","author":"L Chua","year":"2011","unstructured":"Chua, L.: Resistance switching memories are memristors. Appl. Phys. A Mater. Sci. Process. 102(4), 765\u2013783 (2011). doi: 10.1007\/s00339-011-6264-9","journal-title":"Appl. Phys. A Mater. Sci. Process."},{"issue":"2","key":"3294_CR10","doi-asserted-by":"publisher","first-page":"507","DOI":"10.1109\/TCT.1971.1083337","volume":"18","author":"LO Chua","year":"1971","unstructured":"Chua, L.O.: Memristor\u2014the missing circuit element. IEEE Trans. Circuit Theory 18(2), 507\u2013519 (1971). doi: 10.1109\/TCT.1971.1083337","journal-title":"IEEE Trans. Circuit Theory"},{"issue":"11","key":"3294_CR11","doi-asserted-by":"publisher","first-page":"1014","DOI":"10.1109\/TCS.1980.1084742","volume":"27","author":"LO Chua","year":"1980","unstructured":"Chua, L.O., Kang, S.M.: Device modeling via basic nonlinear circuits elements. IEEE Trans. Circuits Syst. 27(11), 1014\u20131044 (1980). doi: 10.1109\/TCS.1980.1084742","journal-title":"IEEE Trans. Circuits Syst."},{"key":"3294_CR12","volume-title":"DNA Science: A First Course","author":"FG David","year":"2003","unstructured":"David, F.G.: DNA Science: A First Course, 2nd edn. Cold Spring Harbor Laboratory Press, New York (2003)","edition":"2"},{"issue":"4","key":"3294_CR13","doi-asserted-by":"publisher","first-page":"600","DOI":"10.1108\/03321649910296636","volume":"18","author":"J Deskur","year":"1999","unstructured":"Deskur, J.: Models of magnetic circuits and their equivalent electrical diagrams. Int. J. Comput. Math. Electr. Electron. Eng. 18(4), 600\u2013610 (1999). doi: 10.1108\/03321649910296636","journal-title":"Int. J. Comput. Math. Electr. Electron. Eng."},{"issue":"2","key":"3294_CR14","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1109\/MCS.2007.338279","volume":"27","author":"PJ Gawthrop","year":"2007","unstructured":"Gawthrop, P.J., Bevan, G.P.: Bond-graph modeling: a tutorial introduction for control engineers. IEEE Control Syst. Mag. 27(2), 24\u201345 (2007). doi: 10.1109\/MCS.2007.338279","journal-title":"IEEE Control Syst. Mag."},{"key":"3294_CR15","volume-title":"Metamodelling: Bond Graphs and Dynamic Systems","author":"PJ Gawthrop","year":"1996","unstructured":"Gawthrop, P.J., Smith, L.S.: Metamodelling: Bond Graphs and Dynamic Systems. Prentice Hall, Englewood Cliffs (1996)"},{"issue":"21","key":"3294_CR16","doi-asserted-by":"publisher","first-page":"6947","DOI":"10.1021\/jacs.5b03482","volume":"137","author":"MM Georgiadis","year":"2015","unstructured":"Georgiadis, M.M., Singh, I., Kellett, W.F., Hoshika, S., Benner, S.A., Richards, N.G.: Structural basis for a six nucleotide genetic alphabet. J. Am. Chem. Soc. 137(21), 6947\u20136955 (2015). doi: 10.1021\/jacs.5b03482","journal-title":"J. Am. Chem. Soc."},{"issue":"6","key":"3294_CR17","doi-asserted-by":"publisher","first-page":"1928","DOI":"10.1109\/JPROC.2011.2164169","volume":"100","author":"D Jeltsema","year":"2012","unstructured":"Jeltsema, D., D\u00f2ria-Cerezo, A.: Port-Hamiltonian formulation of systems with memory. Proc. IEEE 100(6), 1928\u20131937 (2012). doi: 10.1109\/JPROC.2011.2164169","journal-title":"Proc. IEEE"},{"key":"3294_CR18","doi-asserted-by":"publisher","first-page":"1297","DOI":"10.1021\/nl904092h","volume":"10","author":"SH Jo","year":"2010","unstructured":"Jo, S.H., Chang, T., Ebong, I., Bhadviya, B.B., Mazumder, P., Lu, W.: Nanoscale memristor device as synapse in neuromorphic systems. Nano Lett. 10, 1297\u20131301 (2010). doi: 10.1021\/nl904092h","journal-title":"Nano Lett."},{"key":"3294_CR19","volume-title":"System Dynamics: A Unified Approach","author":"D Karnopp","year":"1975","unstructured":"Karnopp, D., Rosenberg, R.C.: System Dynamics: A Unified Approach. Wiley, New York (1975)"},{"key":"3294_CR20","unstructured":"Ma, C., Hori, Y.: Application of bond graph models to the representation of buildings and their use. In: Proceedings of American Control Conference, pp. 2901\u20132906. Boston, Massachusetts, USA (2004)"},{"issue":"12","key":"3294_CR21","doi-asserted-by":"publisher","first-page":"264","DOI":"10.1016\/j.cnsns.2012.07.014","volume":"18","author":"JAT Machado","year":"2013","unstructured":"Machado, J.A.T.: Fractional generalization of memristor and higher order elements. Commun. Nonlinear Sci. Numer. Simul. 18(12), 264\u2013275 (2013). doi: 10.1016\/j.cnsns.2012.07.014","journal-title":"Commun. Nonlinear Sci. Numer. Simul."},{"issue":"4","key":"3294_CR22","doi-asserted-by":"publisher","first-page":"1839","DOI":"10.1007\/s11071-014-1334-0","volume":"80","author":"JAT Machado","year":"2015","unstructured":"Machado, J.A.T., Mata, M.E.: A fractional perspective to the bond graph modelling of world economies. Nonlinear Dyn. 80(4), 1839\u20131852 (2015). doi: 10.1007\/s11071-014-1334-0","journal-title":"Nonlinear Dyn."},{"issue":"14","key":"3294_CR23","doi-asserted-by":"publisher","first-page":"4095","DOI":"10.1016\/j.apm.2014.12.037","volume":"39","author":"JT Machado","year":"2015","unstructured":"Machado, J.T.: Fractional order description of DNA. Appl. Math. Model. 39(14), 4095\u20134102 (2015). doi: 10.1016\/j.apm.2014.12.037","journal-title":"Appl. Math. Model."},{"issue":"8","key":"3294_CR24","doi-asserted-by":"publisher","first-page":"2963","DOI":"10.1016\/j.cnsns.2010.11.007","volume":"16","author":"JT Machado","year":"2011","unstructured":"Machado, J.T., Costa, A.C., Quelhas, M.D.: Fractional dynamics in DNA. Commun. Nonlinear Sci. Numer. Simul. 16(8), 2963\u20132969 (2011). doi: 10.1016\/j.cnsns.2010.11.007","journal-title":"Commun. Nonlinear Sci. Numer. Simul."},{"key":"3294_CR25","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-4471-4628-5","volume-title":"Intelligent Mechatronic Systems: Modeling, Control and Diagnosis","author":"R Merzouki","year":"2013","unstructured":"Merzouki, R., Pathak, A.K.S.P.M., Bouamama, B.O.: Intelligent Mechatronic Systems: Modeling, Control and Diagnosis. Springer, London (2013)"},{"key":"3294_CR26","volume-title":"Bond Graph in Modeling, Simulation and Fault Identification","author":"A Mukherjee","year":"2006","unstructured":"Mukherjee, A., Karmakar, R., Samantaray, A.K.: Bond Graph in Modeling, Simulation and Fault Identification. CRC Press, New Delhi (2006)"},{"key":"3294_CR27","doi-asserted-by":"publisher","DOI":"10.1126\/science.aac7341","author":"AAK Nielsen","year":"2016","unstructured":"Nielsen, A.A.K., Der, B.S., Shin, J., Vaidyanathan, P., Paralanov, V., Strychalski, E.A., Ross, D., Densmore, D., Voigt, C.A.: Genetic circuit design automation. Science (2016). doi: 10.1126\/science.aac7341","journal-title":"Science"},{"issue":"3","key":"3294_CR28","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1115\/1.3426595","volume":"94","author":"GF Oster","year":"1972","unstructured":"Oster, G.F., Auslander, D.M.: The memristor: a new bond graph element. Trans. ASME Dyn. Syst. Meas. Control 94(3), 249\u2013252 (1972). doi: 10.1115\/1.3426595","journal-title":"Trans. ASME Dyn. Syst. Meas. Control"},{"key":"3294_CR29","volume-title":"An Epistemic Prehistory of Bond Graphs","author":"H Paynter","year":"1992","unstructured":"Paynter, H.: An Epistemic Prehistory of Bond Graphs. North-Holland, Amsterdam (1992)"},{"issue":"2","key":"3294_CR30","doi-asserted-by":"publisher","first-page":"1","DOI":"10.4172\/2153-0637.1000131","volume":"5","author":"JC Perez","year":"2015","unstructured":"Perez, J.C.: Deciphering hidden DNA meta-codes\u2013the great unification and master code of biology. J. Glycom. Lipidom. 5(2), 1\u201320 (2015). doi: 10.4172\/2153-0637.1000131","journal-title":"J. Glycom. Lipidom."},{"key":"3294_CR31","doi-asserted-by":"publisher","unstructured":"Stergachis, A.B., Haugen, E., Shafer, A., Fu, W., Vernot, B., Reynolds, A., Raubitschek, A., Ziegler, S., LeProust, E.M., Akey, J.M., Stamatoyannopoulos, J.A.: Exonic transcription factor binding directs codon choice and affects protein evolution. Science 342(6164), 1367\u20131372 (2013). doi: 10.1126\/science.1243490","DOI":"10.1126\/science.1243490"},{"key":"3294_CR32","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1038\/nature06932","volume":"97","author":"DB Strukov","year":"2008","unstructured":"Strukov, D.B., Snider, G.S., Stewart, D.R., Williams, R.S.: The missing memristor found. Nature 97, 80\u201383 (2008). doi: 10.1038\/nature06932","journal-title":"Nature"},{"key":"3294_CR33","volume-title":"Modelling and Simulation in Thermal and Chemical Engineering: A Bond Graph Approach","author":"J Thoma","year":"2010","unstructured":"Thoma, J., Bouamama, B.O.: Modelling and Simulation in Thermal and Chemical Engineering: A Bond Graph Approach. Springer, Berlin (2010)"},{"key":"3294_CR34","volume-title":"Introduction to Bond Graphs and Their Applications","author":"JU Thoma","year":"1975","unstructured":"Thoma, J.U.: Introduction to Bond Graphs and Their Applications. Pergamon Press, Oxford (1975)"},{"key":"3294_CR35","volume-title":"Unified Energy-Based Qualitative Representation for Building Analysis","author":"JJH Tsai","year":"2009","unstructured":"Tsai, J.J.H., Gero, J.S.: Unified Energy-Based Qualitative Representation for Building Analysis. VDM Verlag, Saarbrucken (2009)"},{"issue":"1","key":"3294_CR36","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1016\/j.autcon.2009.07.007","volume":"19","author":"JJH Tsai","year":"2010","unstructured":"Tsai, J.J.H., Gero, J.S.: A qualitative energy-based unified representation for buildings. Autom. Constr. 19(1), 20\u201342 (2010)","journal-title":"Autom. Constr."},{"issue":"10","key":"3294_CR37","doi-asserted-by":"publisher","first-page":"1717","DOI":"10.1109\/JPROC.2009.2027660","volume":"97","author":"MD Ventra","year":"2009","unstructured":"Ventra, M.D., Pershin, Y.V., Chua, L.O.: Circuits elements with memory: memristors, memcapacitors and meminductors. Proc. IEEE 97(10), 1717\u20131724 (2009). doi: 10.1109\/JPROC.2009.2027660","journal-title":"Proc. IEEE"},{"key":"3294_CR38","unstructured":"Watson, J.D.: The Double Helix: A Personal Account of the Discovery of the Structure of DNA. Touchstone, First Touchstone Edition (2001)"},{"key":"3294_CR39","doi-asserted-by":"publisher","first-page":"1325","DOI":"10.1126\/science.1248425","volume":"342","author":"RJ Weatheritt","year":"2016","unstructured":"Weatheritt, R.J., Babu, M.M.: The hidden codes that shape protein evolution. Science 342, 1325\u20131326 (2016). doi: 10.1126\/science.1248425","journal-title":"Science"},{"key":"3294_CR40","volume-title":"Introduction to Physical System Modelling","author":"PE Wellstead","year":"1979","unstructured":"Wellstead, P.E.: Introduction to Physical System Modelling. Academic Press, London (1979)"},{"issue":"12","key":"3294_CR41","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1109\/MSPEC.2008.4687366","volume":"45","author":"RS Williams","year":"2008","unstructured":"Williams, R.S.: How we found the missing memristor. IEEE Spectr. 45(12), 28\u201335 (2008). doi: 10.1109\/MSPEC.2008.4687366","journal-title":"IEEE Spectr."},{"issue":"3","key":"3294_CR42","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1080\/02286203.2001.11442201","volume":"21","author":"YK Wong","year":"2001","unstructured":"Wong, Y.K.: Application of bond graph models to economics. Int. J. Model. Simul. 21(3), 181\u2013190 (2001). doi: 10.1080\/02286203.2001.11442201","journal-title":"Int. J. Model. Simul."}],"container-title":["Nonlinear Dynamics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11071-016-3294-z.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11071-016-3294-z\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11071-016-3294-z.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,21]],"date-time":"2024-06-21T10:15:59Z","timestamp":1718964959000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11071-016-3294-z"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,12,21]]},"references-count":42,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2017,4]]}},"alternative-id":["3294"],"URL":"https:\/\/doi.org\/10.1007\/s11071-016-3294-z","relation":{},"ISSN":["0924-090X","1573-269X"],"issn-type":[{"value":"0924-090X","type":"print"},{"value":"1573-269X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,12,21]]}}}