{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T12:17:18Z","timestamp":1775305038813,"version":"3.50.1"},"reference-count":35,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2011,10,6]],"date-time":"2011-10-06T00:00:00Z","timestamp":1317859200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Plant Mol Biol Rep"],"published-print":{"date-parts":[[2012,6]]},"DOI":"10.1007\/s11105-011-0367-5","type":"journal-article","created":{"date-parts":[[2011,10,5]],"date-time":"2011-10-05T13:27:42Z","timestamp":1317821262000},"page":"578-589","source":"Crossref","is-referenced-by-count":16,"title":["Genetic Diversity in Old Portuguese Durum Wheat Cultivars Assessed by Retrotransposon-Based Markers"],"prefix":"10.1007","volume":"30","author":[{"given":"Ana","family":"Carvalho","sequence":"first","affiliation":[]},{"given":"Henrique","family":"Guedes-Pinto","sequence":"additional","affiliation":[]},{"given":"Jos\u00e9 Eduardo","family":"Lima-Brito","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2011,10,6]]},"reference":[{"issue":"2008\/3","key":"367_CR1","doi-asserted-by":"crossref","first-page":"795","DOI":"10.1080\/13102818.2008.10817555","volume":"22","author":"SS Alavi-Kia","year":"2008","unstructured":"Alavi-Kia SS, Mohammadi SA, Aharizad S, Moghaddam M (2008) Analysis of genetic diversity and phylogenetic relationships in Crocus genus of Iran using inter-retrotransposon amplified polymorphism. Biotechnol & Biotechnol EQ 22(2008\/3):795\u2013800","journal-title":"Biotechnol & Biotechnol EQ"},{"key":"367_CR2","unstructured":"Bagulho F, Ma\u00e7\u00e3s B, Coutinho J, Gon\u00e7alves MJ, Brites C (1995) Durum wheat in Portugal: status and potentialities. In: Fonzo N, Kaan F, Nachit M (eds) Options M\u00e9diterran\u00e9ennes: S\u00e9rie A\u2014S\u00e9minaires M\u00e9diterran\u00e9es n. 22, CIHEAM-IAMZ. Durum wheat quality in the Mediterranean region, 17\u201319 Nov 1993, Zaragoza, Spain, pp 109\u2013115"},{"key":"367_CR3","doi-asserted-by":"crossref","first-page":"e1402","DOI":"10.1371\/journal.pone.0001402","volume":"3","author":"M Bento","year":"2008","unstructured":"Bento M, Pereira HS, Rocheta M, Gustafson P, Viegas W, Silva M (2008) Polyploidization as a retraction force in plant genome evolution: sequence rearrangements in Triticale. PLoS ONE 3:e1402. doi: 10.1371\/journal.pone.0001402","journal-title":"PLoS ONE"},{"key":"367_CR4","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1007\/s00122-010-1325-6","volume":"121","author":"M Bento","year":"2010","unstructured":"Bento M, Gustafson P, Viegas W, Silva M (2010) Genome merger: from sequence rearrangements in triticale to their elimination in wheat\u2013rye addition lines. Theor Appl Genet 121:489\u2013497","journal-title":"Theor Appl Genet"},{"key":"367_CR5","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1007\/BF03194667","volume":"48","author":"CJS Branco","year":"2007","unstructured":"Branco CJS, Vieira EA, Malone G, Kopp MM, Malone E, Bernardes A, Mistura CC, Carvalho FIF, Oliveira CA (2007) IRAP and REMAP assessments of genetic similarity in rice. J Appl Genet 48:107\u2013113","journal-title":"J Appl Genet"},{"key":"367_CR6","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1007\/s10528-009-9227-5","volume":"47","author":"A Carvalho","year":"2009","unstructured":"Carvalho A, Lima-Brito J, Ma\u00e7\u00e3s B, Guedes-Pinto H (2009) Genetic diversity and variation among botanical varieties of old Portuguese wheat cultivars revealed by ISSR assays. Biochem Genet 47:276\u2013294","journal-title":"Biochem Genet"},{"key":"367_CR7","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1111\/j.1744-7348.2010.00390.x","volume":"156","author":"A Carvalho","year":"2010","unstructured":"Carvalho A, Guedes-Pinto H, Martins-Lopes P, Lima-Brito J (2010) Genetic variability analysis in old Portuguese bread wheat cultivars assayed by IRAP and REMAP markers. Ann Appl Biol 156:337\u2013345","journal-title":"Ann Appl Biol"},{"key":"367_CR8","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1007\/s12041-011-0033-6","volume":"90","author":"A Carvalho","year":"2011","unstructured":"Carvalho A, Guedes-Pinto H, Lima-Brito J (2011) Physical localization of NORs and ITS length variants in old Portuguese durum wheat cultivars. J Genet 90:95\u2013101","journal-title":"J Genet"},{"key":"367_CR9","doi-asserted-by":"crossref","first-page":"943","DOI":"10.1139\/g05-045","volume":"48","author":"S Chadha","year":"2005","unstructured":"Chadha S, Gopalakrishna T (2005) Retrotransposon-microsatellite amplified polymorphism (REMAP) markers for genetic diversity assessment of the rice blast pathogen (Magnaporthe grisea). Genome 48:943\u2013945","journal-title":"Genome"},{"key":"367_CR10","doi-asserted-by":"crossref","unstructured":"C\u00f6mertpay G, Baloch F, Kilian B, \u00dclger A, \u00d6zkan H (2011) Diversity assessment of Turkish maize landraces based on fluorescent labelled SSR markers. Plant Mol Biol Rep. doi: 10.1007\/s11105-011-0332-3","DOI":"10.1007\/s11105-011-0332-3"},{"key":"367_CR11","first-page":"11","volume":"19","author":"JJ Doyle","year":"1987","unstructured":"Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11\u201315","journal-title":"Phytochem Bull"},{"key":"367_CR12","doi-asserted-by":"crossref","first-page":"574","DOI":"10.1111\/j.1471-8286.2007.01758.x","volume":"7","author":"D Falush","year":"2007","unstructured":"Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7:574\u2013578","journal-title":"Mol Ecol Notes"},{"key":"367_CR13","doi-asserted-by":"crossref","first-page":"783","DOI":"10.2307\/2408678","volume":"39","author":"J Felsenstein","year":"1985","unstructured":"Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783\u2013791","journal-title":"Evolution"},{"key":"367_CR14","first-page":"366","volume":"9","author":"SV Hedges","year":"1992","unstructured":"Hedges SV (1992) The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol Biol Evol 9:366\u2013369","journal-title":"Mol Biol Evol"},{"key":"367_CR15","first-page":"223","volume":"44","author":"P Jaccard","year":"1908","unstructured":"Jaccard P (1908) Nouvelles recherches sur la distribution florale. Bulletin de la Soci\u00e9t\u00e9 Vaudoise des Sciences Naturelles 44:223\u2013270","journal-title":"Bulletin de la Soci\u00e9t\u00e9 Vaudoise des Sciences Naturelles"},{"key":"367_CR16","doi-asserted-by":"crossref","first-page":"2478","DOI":"10.1038\/nprot.2006.377","volume":"1","author":"R Kalendar","year":"2006","unstructured":"Kalendar R, Schulman AH (2006) IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nat Protoc 1:2478\u20132484","journal-title":"Nat Protoc"},{"key":"367_CR17","doi-asserted-by":"crossref","first-page":"704","DOI":"10.1007\/s001220051124","volume":"98","author":"R Kalendar","year":"1999","unstructured":"Kalendar R, Grob T, Regina M, Suoniemi A, Schulman A (1999) IRAP and REMAP: two retrotransposon-based DNA fingerprinting techniques. Theor Appl Genet 98:704\u2013711","journal-title":"Theor Appl Genet"},{"key":"367_CR18","doi-asserted-by":"crossref","first-page":"6603","DOI":"10.1073\/pnas.110587497","volume":"97","author":"R Kalendar","year":"2000","unstructured":"Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH (2000) Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci USA 97:6603\u20136607","journal-title":"Proc Natl Acad Sci USA"},{"key":"367_CR19","doi-asserted-by":"crossref","first-page":"464","DOI":"10.1007\/s00438-003-0850-2","volume":"269","author":"F Leigh","year":"2003","unstructured":"Leigh F, Kalendar R, Lea V, Lee D, Donini P, Schulman AH (2003) Comparison of the utility of barley retrotransposon families for genetic analysis by molecular marker techniques. Mol Genet Genomics 269:464\u2013474","journal-title":"Mol Genet Genomics"},{"key":"367_CR20","doi-asserted-by":"crossref","unstructured":"Mandoulakani BA, Piri Y, Darvishzadeh R, Bernoosi I, Jafari M (2011) Retroelement insertional polymorphism and genetic diversity in Medicago sativa populations revealed by IRAP and REMAP markers. Plant Mol Biol Rep. doi: 10.1007\/s11105-011-0338-x","DOI":"10.1007\/s11105-011-0338-x"},{"key":"367_CR21","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1007\/s004380000326","volume":"264","author":"O Manninen","year":"2000","unstructured":"Manninen O, Kalendar R, Robinson J, Schulman AH (2000) Application of BARE-1 retrotransposon markers to the mapping of a major resistance gene for net blotch in barley. Mol Gen Genet 264:325\u2013334","journal-title":"Mol Gen Genet"},{"key":"367_CR22","doi-asserted-by":"crossref","DOI":"10.7312\/nei-92038","volume-title":"Molecular evolutionary genetics","author":"M Nei","year":"1987","unstructured":"Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York"},{"key":"367_CR23","doi-asserted-by":"crossref","first-page":"288","DOI":"10.1111\/j.1471-8286.2005.01155.x","volume":"6","author":"R Peakall","year":"2006","unstructured":"Peakall R, Smouse PE (2006) Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288\u2013295","journal-title":"Mol Ecol Notes"},{"key":"367_CR24","volume-title":"NTSYS-pc ver. 2.02. Numerical taxonomy and multivariate analysis system","author":"FJ Rohlf","year":"1998","unstructured":"Rohlf FJ (1998) NTSYS-pc ver. 2.02. Numerical taxonomy and multivariate analysis system. Exeter Publishing, Setauket"},{"key":"367_CR25","doi-asserted-by":"crossref","unstructured":"Saeed A, Hoysepyan H, Darvishzadeh R, Imtiaz M, Panguluri S, Nazaryan R (2011) Genetic diversity of Iranian accessions, improved lines of chickpea (Cicer arietinum L.) and their wild relatives by using simple sequence repeats. Plant Mol Biol Rep. doi: 10.1007\/s11105-011-0294-5","DOI":"10.1007\/s11105-011-0294-5"},{"key":"367_CR26","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1093\/aob\/mcn042","volume":"101","author":"H Saeidi","year":"2008","unstructured":"Saeidi H, Rahiminejad MR, Heslop-Harrison JS (2008) Retroelement insertional polymorphisms, diversity and phylogeography within diploid, D-genome Aegilops tauschii (Triticeae, Poaceae) sub-taxa in Iran. Ann Bot 101:855\u2013861","journal-title":"Ann Bot"},{"key":"367_CR27","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1007\/s11105-010-0254-5","volume":"29","author":"M Swapna","year":"2011","unstructured":"Swapna M, Sivaraju K, Sharma R, Singh N, Mohapatra T (2011) Single-strand conformational polymorphism of EST-SSRs: a potential tool for diversity analysis and varietal identification in sugarcane. Plant Mol Biol Rep 29:505\u2013513","journal-title":"Plant Mol Biol Rep"},{"key":"367_CR28","doi-asserted-by":"crossref","first-page":"252","DOI":"10.1007\/s11105-010-0220-2","volume":"29","author":"P Tanya","year":"2011","unstructured":"Tanya P, Taeprayoon P, Hadkam Y, Srivines P (2011) Genetic diversity among Jatropha and Jatropha-related species based on ISSR markers. Plant Mol Biol Rep 29:252\u2013264","journal-title":"Plant Mol Biol Rep"},{"key":"367_CR29","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1007\/s11105-010-0277-y","volume":"29","author":"A Uzun","year":"2011","unstructured":"Uzun A, Yyesiloglu T, Polat I, Aka-Kacar Y, Gulsen O, Yildirim B, Tuzcu O, Tepe S, Canan I, Anil S (2011) Evaluation of genetic diversity in lemons and some of their relatives based on SRAP and SSR markers. Plant Mol Biol Rep 29:693\u2013701","journal-title":"Plant Mol Biol Rep"},{"key":"367_CR30","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1007\/s11105-010-0258-1","volume":"29","author":"O Vargas-Ponce","year":"2011","unstructured":"Vargas-Ponce O, P\u00e9rez-\u00c1lvarez L, Zamora-Tavares P, Rodr\u00edguez A (2011) Assessing genetic diversity in Mexican husk tomato species. Plant Mol Biol Rep 29:733\u2013738","journal-title":"Plant Mol Biol Rep"},{"key":"367_CR31","unstructured":"Vasconcellos JC (1933) Trigos Portugueses ou de h\u00e1 muito cultivados no Pa\u00eds (subs\u00eddios para o seu estudo bot\u00e2nico). Separata do Boletim de Agricultura. Ano I\u2013N\u00fameros 1 e 2; 1\u00aa S\u00e9rie, Lisbon, Portugal, 150 pp"},{"key":"367_CR32","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1023\/A:1003929913398","volume":"107","author":"CM Vicient","year":"1999","unstructured":"Vicient CM, Kalendar R, Anamthawat-J\u00f3nsson K, Suoniemi A, Schulman AH (1999) Structure, functionality, and evolution of the BARE-1 retrotransposon of barley. Genetica 107:53\u201363","journal-title":"Genetica"},{"key":"367_CR33","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1007\/s11105-010-0261-6","volume":"29","author":"R-J Xie","year":"2011","unstructured":"Xie R-J, Zhou J, Wang G-Y, Zhang S-M, Chen L, Gao Z-S (2011) Cultivar identification and genetic diversity of Chinese bayberry (Myrica rubra) accessions based on fluorescent SSR markers. Plant Mol Biol Rep 29:554\u2013562","journal-title":"Plant Mol Biol Rep"},{"key":"367_CR34","volume-title":"Winboot: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms","author":"IV Yap","year":"1996","unstructured":"Yap IV, Nelson RJ (1996) Winboot: a program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. IRRI, Manila"},{"key":"367_CR35","doi-asserted-by":"crossref","unstructured":"Zou M, Xia Z, Ling P, Zhang Y, Chen X, Wei Z, Bo W, Wang W (2011) Mining EST-derived SSR markers to assess genetic diversity in cassava (Manihot esculenta Crantz). Plant Mol Biol Rep. doi: 10.1007\/s11105-011-0299-0","DOI":"10.1007\/s11105-011-0299-0"}],"container-title":["Plant Molecular Biology Reporter"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11105-011-0367-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11105-011-0367-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11105-011-0367-5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,17]],"date-time":"2019-06-17T03:07:20Z","timestamp":1560740840000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11105-011-0367-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,10,6]]},"references-count":35,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2012,6]]}},"alternative-id":["367"],"URL":"https:\/\/doi.org\/10.1007\/s11105-011-0367-5","relation":{},"ISSN":["0735-9640","1572-9818"],"issn-type":[{"value":"0735-9640","type":"print"},{"value":"1572-9818","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,10,6]]}}}