{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,31]],"date-time":"2025-12-31T01:11:08Z","timestamp":1767143468796,"version":"build-2238731810"},"reference-count":32,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2013,8,24]],"date-time":"2013-08-24T00:00:00Z","timestamp":1377302400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Ann Microbiol"],"published-print":{"date-parts":[[2014,6]]},"DOI":"10.1007\/s13213-013-0713-y","type":"journal-article","created":{"date-parts":[[2013,8,23]],"date-time":"2013-08-23T02:40:27Z","timestamp":1377225627000},"page":"773-778","source":"Crossref","is-referenced-by-count":2,"title":["Proportion of prokaryotes enumerated as viruses by epifluorescence microscopy"],"prefix":"10.1007","volume":"64","author":[{"given":"Carlos","family":"Mendes","sequence":"first","affiliation":[]},{"given":"Lu\u00edsa","family":"Santos","sequence":"additional","affiliation":[]},{"given":"\u00c2ngela","family":"Cunha","sequence":"additional","affiliation":[]},{"given":"Newton C. M.","family":"Gomez","sequence":"additional","affiliation":[]},{"given":"Adelaide","family":"Almeida","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2013,8,24]]},"reference":[{"key":"713_CR1","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1007\/s00705-006-0849-1","volume":"152","author":"HW Ackermann","year":"2007","unstructured":"Ackermann HW (2007) 5500 Phages examined in the electron microscope. Arch Virol 152:227\u2013243","journal-title":"Arch Virol"},{"key":"713_CR2","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1023\/A:1020335308243","volume":"475","author":"M Almeida","year":"2002","unstructured":"Almeida M, Cunha M, Alc\u00e2ntara F (2002) Seasonal change in the proportion of bacterial and phytoplankton production along a salinity gradient in a shallow estuary. Hydrobiologia 475:251\u2013262","journal-title":"Hydrobiologia"},{"key":"713_CR3","doi-asserted-by":"crossref","first-page":"562","DOI":"10.1007\/s00248-001-0020-1","volume":"42","author":"M Almeida","year":"2001","unstructured":"Almeida M, Cunha MA, Alcantara F (2001) Loss of estuarine bacteria by viral infection and predation in microcosm conditions. Microb Ecol 42:562\u2013571","journal-title":"Microb Ecol"},{"key":"713_CR4","doi-asserted-by":"crossref","first-page":"165","DOI":"10.3354\/meps089165","volume":"89","author":"MA Almeida","year":"1992","unstructured":"Almeida MA, Alcantara F (1992) Bacterial colonization of seston particles in brackish waters (Ria de Aveiro, Portugal). Marine ecology progress series. Oldendorf 89:165\u2013173","journal-title":"Oldendorf"},{"key":"713_CR5","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1038\/nrmicro1888","volume":"6","author":"R Amann","year":"2008","unstructured":"Amann R, Fuchs BM (2008) Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Microbiol 6:339\u2013348","journal-title":"Nat Rev Microbiol"},{"key":"713_CR6","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1016\/S0958-1669(00)00204-4","volume":"12","author":"R Amann","year":"2001","unstructured":"Amann R, Fuchs BM, Behrens S (2001) The identification of microorganisms by fluorescence in situ hybridisation. Curr Opin Biotechnol 12:231\u2013236","journal-title":"Curr Opin Biotechnol"},{"key":"713_CR7","doi-asserted-by":"crossref","first-page":"3496","DOI":"10.1128\/jb.178.12.3496-3500.1996","volume":"178","author":"R Amann","year":"1996","unstructured":"Amann R, Snaidr J, Wagner M, Ludwig W, Schleifer K-H (1996) In situ visualization of high genetic diversity in a natural microbial community. J Bacteriol 178:3496\u20133500","journal-title":"J Bacteriol"},{"key":"713_CR8","doi-asserted-by":"crossref","first-page":"1919","DOI":"10.1128\/AEM.56.6.1919-1925.1990","volume":"56","author":"RI Amann","year":"1990","unstructured":"Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA (1990a) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microb 56:1919\u20131925","journal-title":"Appl Environ Microb"},{"key":"713_CR9","doi-asserted-by":"crossref","first-page":"762","DOI":"10.1128\/jb.172.2.762-770.1990","volume":"172","author":"RI Amann","year":"1990","unstructured":"Amann RI, Krumholz L, Stahl DA (1990b) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172:762\u2013770","journal-title":"J Bacteriol"},{"key":"713_CR10","doi-asserted-by":"crossref","first-page":"257","DOI":"10.3354\/meps010257","volume":"1","author":"L Azam","year":"1983","unstructured":"Azam L (1983) 1 The ecological role oi water-column microbes in. Mar Ecol Prog Ser 1:257\u2013263","journal-title":"Mar Ecol Prog Ser"},{"key":"713_CR11","doi-asserted-by":"crossref","first-page":"299","DOI":"10.3354\/ame01472","volume":"62","author":"I Baptista","year":"2011","unstructured":"Baptista I, Santos AL, Cunha \u00c2, Gomes NCM, Almeida A (2011) Bacterial biomass production in an estuarine system: high variability of leucine conversion factors and changes in bacterial community structure during incubation. Aquat Microb Ecol 62:299\u2013310","journal-title":"Aquat Microb Ecol"},{"key":"713_CR12","doi-asserted-by":"crossref","unstructured":"Buesing N (2005) Bacterial counts and biomass determination by epifluorescence microscopy. In: Methods to study litter decomposition. Springer, Dordrecht, pp 203\u2013208","DOI":"10.1007\/1-4020-3466-0_27"},{"key":"713_CR13","doi-asserted-by":"crossref","first-page":"253","DOI":"10.3354\/meps063253","volume":"63","author":"BC Cho","year":"1990","unstructured":"Cho BC, Azam F (1990) Biogeochemical significance of bacterial biomass in the ocean\u2019s euphotic zone. Mar Ecol Prog Ser 63:253\u2013259","journal-title":"Mar Ecol Prog Ser"},{"key":"713_CR14","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1007\/s00248-002-1033-0","volume":"45","author":"R Danovaro","year":"2003","unstructured":"Danovaro R, Corinaldesi C (2003) Sunscreen products increase virus production through prophage induction in marine bacterioplankton. Microb Ecol 45:109\u2013118","journal-title":"Microb Ecol"},{"key":"713_CR15","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1007\/978-1-4684-7609-5_3","volume":"12","author":"HW Ducklow","year":"1992","unstructured":"Ducklow HW, Carlson CA (1992) Oceanic bacterial production. Adv Microb Ecol 12:113\u2013181","journal-title":"Adv Microb Ecol"},{"key":"713_CR16","doi-asserted-by":"crossref","first-page":"3044","DOI":"10.1128\/AEM.66.7.3044-3051.2000","volume":"66","author":"H Eilers","year":"2000","unstructured":"Eilers H, Pernthaler J, Gl\u00f6ckner FO, Amann R (2000) Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl Environ Microb 66:3044\u20133051","journal-title":"Appl Environ Microb"},{"key":"713_CR17","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3354\/ame027001","volume":"27","author":"UR Fischer","year":"2002","unstructured":"Fischer UR, Velimirov B (2002) High control of bacterial production by viruses in a eutrophic oxbow lake. Aquat Microb Ecol 27:1\u201312","journal-title":"Aquat Microb Ecol"},{"key":"713_CR18","doi-asserted-by":"crossref","unstructured":"Hennes KP, Suttle CA (1995) Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy. Limnol Oceanogr 1050\u20131055","DOI":"10.4319\/lo.1995.40.6.1050"},{"key":"713_CR19","doi-asserted-by":"crossref","first-page":"201","DOI":"10.3354\/meps017201","volume":"17","author":"P Holligan","year":"1984","unstructured":"Holligan P, Williams PJB, Purdie D, Harris R (1984) Photosynthesis, respiration and nitrogen supply of plankton populations in stratified, frontal and tidally mixed shelf waters. Mar Ecol Prog Ser 17:201\u2013213","journal-title":"Mar Ecol Prog Ser"},{"key":"713_CR20","doi-asserted-by":"crossref","first-page":"2594","DOI":"10.1128\/AEM.59.8.2594-2601.1993","volume":"59","author":"P Kemp","year":"1993","unstructured":"Kemp P, Lee S, LaRoche J (1993) Estimating the growth rate of slowly growing marine bacteria from RNA content. Appl Environ Microbiol 59:2594\u20132601","journal-title":"Appl Environ Microbiol"},{"key":"713_CR21","doi-asserted-by":"crossref","first-page":"2302","DOI":"10.1016\/j.ecolmodel.2010.06.009","volume":"221","author":"JF Lopes","year":"2010","unstructured":"Lopes JF, Almeida MA, Cunha MA (2010) Modelling the ecological patterns of a temperate lagoon in a very wet spring season. Ecol Model 221:2302\u20132322","journal-title":"Ecol Model"},{"key":"713_CR22","doi-asserted-by":"crossref","unstructured":"Oliveira V, Santos AL, Aguiar C, Santos L, Salvador \u00c2C, Gomes N, Silva H, Rocha SM, Almeida A, Cunha \u00c2 (2012) Prokaryotes in salt marsh sediments of Ria de Aveiro: effects of halophyte vegetation on abundance and diversity. Estuar Coast Shelf Sci 110:61\u201368","DOI":"10.1016\/j.ecss.2012.03.013"},{"key":"713_CR23","doi-asserted-by":"crossref","unstructured":"Pereira C, Salvador S, Arrojado C, Silva Y, Santos AL, Cunha A, Gomes N, Almeida A (2011) Evaluating seasonal dynamics of bacterial communities in marine fish aquaculture: a preliminary study before applying phage therapy. J Environ Monit 13:1053\u20131058","DOI":"10.1039\/c0em00434k"},{"key":"713_CR24","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1016\/S0580-9517(01)30046-6","volume":"30","author":"J Pernthaler","year":"2001","unstructured":"Pernthaler J, Gl\u00f6ckner F-O, Sch\u00f6nhuber W, Amann R (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Methods Microbiol 30:207\u2013226","journal-title":"Methods Microbiol"},{"key":"713_CR25","unstructured":"Pomeroy L (1981) Status and needs in protozoan ecology. In: Reid PC, Turley CM, Burkhill PH (eds) Protozoa and their role in marine processes. NATO ASI Series G: Ecological Sciences, vol. 25. Springer, Heidelberg, pp 475\u2013492"},{"key":"713_CR26","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1093\/plankt\/8.3.519","volume":"8","author":"B Riemann","year":"1986","unstructured":"Riemann B, S\u00f8ndergaard M (1986) Regulation of bacterial secondary production in two eutrophic lakes and in experimental enclosures. J Plankton Res 8:519\u2013536","journal-title":"J Plankton Res"},{"key":"713_CR27","doi-asserted-by":"crossref","first-page":"1313","DOI":"10.1128\/AEM.64.4.1313-1318.1998","volume":"64","author":"G Sheridan","year":"1998","unstructured":"Sheridan G, Masters C, Shallcross J, Mackey B (1998) Detection of mRNA by Reverse Transcription-PCR as an Indicator of Viability in Escherichia coli Cells. Appl Environ Microbiol 64:1313\u20131318","journal-title":"Appl Environ Microbiol"},{"key":"713_CR28","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1007\/BF00166813","volume":"28","author":"CA Suttle","year":"1994","unstructured":"Suttle CA (1994) The significance of viruses to mortality in aquatic microbial communities. Microb Ecol 28:237\u2013243","journal-title":"Microb Ecol"},{"key":"713_CR29","unstructured":"Suttle CA (2000) Ecological, evolutionary, and geochemical consequences of viral infection of. Viral Ecol 247"},{"key":"713_CR30","doi-asserted-by":"crossref","first-page":"801","DOI":"10.1038\/nrmicro1750","volume":"5","author":"CA Suttle","year":"2007","unstructured":"Suttle CA (2007) Marine viruses\u2014major players in the global ecosystem. Nat Rev Microbiol 5:801\u2013812","journal-title":"Nat Rev Microbiol"},{"key":"713_CR31","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1016\/j.femsre.2003.08.001","volume":"28","author":"MG Weinbauer","year":"2006","unstructured":"Weinbauer MG (2006) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28:127\u2013181","journal-title":"FEMS Microbiol Rev"},{"key":"713_CR32","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1128\/MMBR.64.1.69-114.2000","volume":"64","author":"KE Wommack","year":"2000","unstructured":"Wommack KE, Colwell RR (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64:69\u2013114","journal-title":"Microbiol Mol Biol Rev"}],"updated-by":[{"DOI":"10.1007\/s13213-013-0769-8","type":"correction","label":"Correction","source":"publisher","updated":{"date-parts":[[2013,11,17]],"date-time":"2013-11-17T00:00:00Z","timestamp":1384646400000}}],"container-title":["Annals of Microbiology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s13213-013-0713-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s13213-013-0713-y\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s13213-013-0713-y","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,2]],"date-time":"2020-08-02T07:52:16Z","timestamp":1596354736000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s13213-013-0713-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,8,24]]},"references-count":32,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2014,6]]}},"alternative-id":["713"],"URL":"https:\/\/doi.org\/10.1007\/s13213-013-0713-y","relation":{},"ISSN":["1590-4261","1869-2044"],"issn-type":[{"value":"1590-4261","type":"print"},{"value":"1869-2044","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,8,24]]}}}