{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,10]],"date-time":"2026-02-10T17:55:34Z","timestamp":1770746134061,"version":"3.49.0"},"reference-count":47,"publisher":"Elsevier BV","issue":"1","license":[{"start":{"date-parts":[[2013,2,1]],"date-time":"2013-02-01T00:00:00Z","timestamp":1359676800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2014,2,1]],"date-time":"2014-02-01T00:00:00Z","timestamp":1391212800000},"content-version":"vor","delay-in-days":365,"URL":"https:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"funder":[{"name":"German Research Foundation (DFG)","award":["RA 497\/18-1"],"award-info":[{"award-number":["RA 497\/18-1"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Journal of Biomedical Informatics"],"published-print":{"date-parts":[[2013,2]]},"DOI":"10.1016\/j.jbi.2012.04.009","type":"journal-article","created":{"date-parts":[[2012,5,8]],"date-time":"2012-05-08T20:47:04Z","timestamp":1336510024000},"page":"15-32","source":"Crossref","is-referenced-by-count":55,"title":["COnto\u2013Diff: generation of complex evolution mappings for life science ontologies"],"prefix":"10.1016","volume":"46","author":[{"given":"Michael","family":"Hartung","sequence":"first","affiliation":[]},{"given":"Anika","family":"Gro\u00df","sequence":"additional","affiliation":[]},{"given":"Erhard","family":"Rahm","sequence":"additional","affiliation":[]}],"member":"78","reference":[{"issue":"3","key":"10.1016\/j.jbi.2012.04.009_b0005","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1093\/bioinformatics\/btm593","article-title":"OBO explorer: an editor for open biomedical ontologies in OWL","volume":"24","author":"Aitken","year":"2008","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jbi.2012.04.009_b0010","doi-asserted-by":"crossref","unstructured":"Aumueller D, Do HH, Massmann S, Rahm E. Schema and ontology matching with COMA++. In: Proc of ACM SIGMOD. ACM; 2005. p. 906\u20138.","DOI":"10.1145\/1066157.1066283"},{"key":"10.1016\/j.jbi.2012.04.009_b0015","unstructured":"Bernstein PA. Applying model management to classical meta data problems. In: Proceedings of conference on innovative database research (CIDR); 2003. p. 209\u201320."},{"key":"10.1016\/j.jbi.2012.04.009_b0020","doi-asserted-by":"crossref","unstructured":"Bernstein PA, Melnik S. Model management 2.0: manipulating richer mappings. In: Proceedings of the 2007 ACM SIGMOD international conference on management of data; 2007. p. 1\u201312.","DOI":"10.1145\/1247480.1247482"},{"issue":"1","key":"10.1016\/j.jbi.2012.04.009_b0025","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1093\/nar\/gkg095","article-title":"The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003","volume":"31","author":"Boeckmann","year":"2003","journal-title":"Nucl Acids Res"},{"key":"10.1016\/j.jbi.2012.04.009_b0030","unstructured":"Ceusters W, Spackman K, Smith B. Would SNOMED CT benefit from realism-based ontology evolution? In: AMIA annual symposium proceedings, vol. 2007; 2007. p. 105."},{"key":"10.1016\/j.jbi.2012.04.009_b0035","unstructured":"Day-Richter J. The OBO flat file format specification, version 1.2. <http:\/\/www.geneontology.org\/go.format.obo-1_2.shtml>."},{"issue":"16","key":"10.1016\/j.jbi.2012.04.009_b0040","doi-asserted-by":"crossref","first-page":"2198","DOI":"10.1093\/bioinformatics\/btm112","article-title":"OBO-edit \u2013 an ontology editor for biologists","volume":"23","author":"Day-Richter","year":"2007","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jbi.2012.04.009_b0045","series-title":"Ontology matching","author":"Euzenat","year":"2007"},{"issue":"Database issue","key":"10.1016\/j.jbi.2012.04.009_b0050","first-page":"D707","article-title":"Ensembl 2008","volume":"36","author":"Flicek","year":"2008","journal-title":"Nucl Acids Res"},{"issue":"2","key":"10.1016\/j.jbi.2012.04.009_b0055","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1017\/S0269888908001367","article-title":"Ontology change: classification and survey","volume":"23","author":"Flouris","year":"2008","journal-title":"Knowl Eng Rev"},{"issue":"Database issue","key":"10.1016\/j.jbi.2012.04.009_b0060","doi-asserted-by":"crossref","first-page":"D440","DOI":"10.1093\/nar\/gkm883","article-title":"The gene ontology project in 2008","volume":"36","author":"Gene Ontology Consortium","year":"2008","journal-title":"Nucl Acids Res"},{"key":"10.1016\/j.jbi.2012.04.009_b0065","unstructured":"Ghazvinian A, Noy N, Musen M. Creating mappings for ontologies in biomedicine: simple methods work. In: Proc of AMIA annual symposium; 2009."},{"key":"10.1016\/j.jbi.2012.04.009_b0070","doi-asserted-by":"crossref","unstructured":"Gross A, Hartung M, Kirsten T, Rahm E. Mapping composition for matching large life science ontologies. In 2nd Intl conference on biomedical ontology (ICBO); 2011.","DOI":"10.1007\/978-3-642-15120-0_4"},{"issue":"6","key":"10.1016\/j.jbi.2012.04.009_b0075","doi-asserted-by":"crossref","first-page":"895","DOI":"10.1093\/bioinformatics\/bts029","article-title":"CODEX: exploration of semantic changes between ontology versions","volume":"26","author":"Hartung","year":"2012","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jbi.2012.04.009_b0080","doi-asserted-by":"crossref","first-page":"250","DOI":"10.1186\/1471-2105-10-250","article-title":"OnEX: exploring changes in life science ontologies","volume":"10","author":"Hartung","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.jbi.2012.04.009_b0085","doi-asserted-by":"crossref","unstructured":"Hartung M, Kirsten T, Rahm E. Analyzing the evolution of life science ontologies and mappings. In: Data integration in the life sciences (DILS); 2008. p. 11\u201327.","DOI":"10.1007\/978-3-540-69828-9_4"},{"key":"10.1016\/j.jbi.2012.04.009_b0090","series-title":"Schema matching and mapping","first-page":"149","article-title":"Recent advances in schema and ontology evolution","author":"Hartung","year":"2011"},{"issue":"3","key":"10.1016\/j.jbi.2012.04.009_b0095","doi-asserted-by":"crossref","first-page":"R29","DOI":"10.1186\/gb-2005-6-3-r29","article-title":"The adult mouse anatomical dictionary: a tool for annotating and integrating data","volume":"6","author":"Hayamizu","year":"2005","journal-title":"Genome Biol"},{"issue":"3","key":"10.1016\/j.jbi.2012.04.009_b0100","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1016\/j.websem.2008.02.006","article-title":"Falcon-AO: a practical ontology matching system","volume":"6","author":"Hu","year":"2008","journal-title":"Web Semantics: Sci. Services Agents World Wide Web"},{"issue":"1","key":"10.1016\/j.jbi.2012.04.009_b0105","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/nar\/gkn923","article-title":"Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists","volume":"37","author":"Huang","year":"2009","journal-title":"Nucl Acids Res"},{"key":"10.1016\/j.jbi.2012.04.009_b0110","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1186\/2041-1480-2-6","article-title":"Gomma: a component-based infrastructure for managing and analyzing life science ontologies and their evolution","volume":"2","author":"Kirsten","year":"2011","journal-title":"J Biomed Semantics"},{"key":"10.1016\/j.jbi.2012.04.009_b0115","doi-asserted-by":"crossref","unstructured":"Kirsten T, Hartung M, Gross A, Rahm E. Efficient management of biomedical ontology versions. In: OTM workshops; 2009. p. 574\u201383.","DOI":"10.1007\/978-3-642-05290-3_71"},{"key":"10.1016\/j.jbi.2012.04.009_b0120","first-page":"247","article-title":"Ontology versioning and change detection on the web","author":"Klein","year":"2002","journal-title":"Knowl Eng Knowl Manage: Ontol Semantic Web"},{"issue":"3","key":"10.1016\/j.jbi.2012.04.009_b0125","doi-asserted-by":"crossref","first-page":"196","DOI":"10.1016\/j.websem.2006.05.003","article-title":"Sambo \u2013 a system for aligning and merging biomedical ontologies","volume":"4","author":"Lambrix","year":"2006","journal-title":"Web Semantics: Sci Services Agents World Wide Web"},{"issue":"16","key":"10.1016\/j.jbi.2012.04.009_b0130","doi-asserted-by":"crossref","first-page":"3448","DOI":"10.1093\/bioinformatics\/bti551","article-title":"Bingo: a cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks","volume":"21","author":"Maere","year":"2005","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jbi.2012.04.009_b0135","doi-asserted-by":"crossref","unstructured":"McCann R, Shen W, Doan A. Matching schemas in online communities: a web 2.0 approach. In: 24th International conference on data engineering; 2008. p. 110\u20139.","DOI":"10.1109\/ICDE.2008.4497419"},{"issue":"14","key":"10.1016\/j.jbi.2012.04.009_b0140","doi-asserted-by":"crossref","first-page":"1868","DOI":"10.1093\/bioinformatics\/btm258","article-title":"OBO to OWL: a protege OWL tab to read\/save OBO ontologies","volume":"23","author":"Moreira","year":"2007","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jbi.2012.04.009_b0145","unstructured":"Noy NF, Shah N, Dai B, Dorf M, Griffith N, Jonquet C, et al. Bioportal: a web repository for biomedical ontologies and data resources. In: Proc of ISWC; 2008."},{"key":"10.1016\/j.jbi.2012.04.009_b0150","doi-asserted-by":"crossref","unstructured":"NoyNF, Chugh A, Liu W, Musen MA. A framework for ontology evolution in collaborative environments. In: The semantic web \u2013 ISWC 2006, 5th international semantic web conference; 2006. p. 544\u201358.","DOI":"10.1007\/11926078_39"},{"key":"10.1016\/j.jbi.2012.04.009_b0155","doi-asserted-by":"crossref","unstructured":"Noy NF, Kunnatur S, Klein M, Musen MA. Tracking changes during ontology evolution. In: Proc of ISWC; 2004. p. 259\u201373.","DOI":"10.1007\/978-3-540-30475-3_19"},{"key":"10.1016\/j.jbi.2012.04.009_b0160","unstructured":"Noy NF, Musen MA. PromptDiff: a fixed-point algorithm for comparing ontology versions. In: Proceedings of the national conference on artificial intelligence; 2002. p. 744\u201350."},{"issue":"1","key":"10.1016\/j.jbi.2012.04.009_b0165","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1016\/S0933-3657(98)00045-1","article-title":"Representation of change in controlled medical terminologies","volume":"15","author":"Oliver","year":"1999","journal-title":"Artif Intel Med"},{"key":"10.1016\/j.jbi.2012.04.009_b0170","doi-asserted-by":"crossref","unstructured":"Papavassiliou V, Flouris G, Fundulaki I, Kotzinos D, Christophides V. On detecting high-level changes in RDF\/S KBs. In: Prof of ISWC; 2009. p. 473\u201388.","DOI":"10.1007\/978-3-642-04930-9_30"},{"key":"10.1016\/j.jbi.2012.04.009_b0175","doi-asserted-by":"crossref","unstructured":"Plessers P, Troyer O. Ontology change detection using a version log. In: Proc of ISWC; 2005.","DOI":"10.1007\/11574620_42"},{"issue":"1","key":"10.1016\/j.jbi.2012.04.009_b0180","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1186\/1471-2105-8-41","article-title":"Func: a package for detecting significant associations between gene sets and ontological annotations","volume":"8","author":"Pr\u00fcfer","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.jbi.2012.04.009_b0185","series-title":"Schema matching and mapping","first-page":"3","article-title":"Towards large scale schema and ontology matching","author":"Rahm","year":"2011"},{"issue":"4","key":"10.1016\/j.jbi.2012.04.009_b0190","doi-asserted-by":"crossref","first-page":"334","DOI":"10.1007\/s007780100057","article-title":"A survey of approaches to automatic schema matching","volume":"10","author":"Rahm","year":"2001","journal-title":"VLDB J"},{"issue":"1","key":"10.1016\/j.jbi.2012.04.009_b0195","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.jbi.2006.02.013","article-title":"NCI thesaurus: a semantic model integrating cancer-related clinical and molecular information","volume":"40","author":"Sioutos","year":"2007","journal-title":"J Biomed Inform"},{"issue":"11","key":"10.1016\/j.jbi.2012.04.009_b0200","doi-asserted-by":"crossref","first-page":"1251","DOI":"10.1038\/nbt1346","article-title":"The OBO foundry: coordinated evolution of ontologies to support biomedical data integration","volume":"25","author":"Smith","year":"2007","journal-title":"Nat Biotechnol"},{"issue":"5","key":"10.1016\/j.jbi.2012.04.009_b0205","doi-asserted-by":"crossref","first-page":"R46","DOI":"10.1186\/gb-2005-6-5-r46","article-title":"Relations in biomedical ontologies","volume":"6","author":"Smith","year":"2005","journal-title":"Genome Biol"},{"issue":"1","key":"10.1016\/j.jbi.2012.04.009_b0210","doi-asserted-by":"crossref","first-page":"R7","DOI":"10.1186\/gb-2004-6-1-r7","article-title":"The mammalian phenotype ontology as a tool for annotating, analyzing and comparing phenotypic information","volume":"6","author":"Smith","year":"2004","journal-title":"Genome Biol"},{"key":"10.1016\/j.jbi.2012.04.009_b0215","first-page":"133","article-title":"User-driven ontology evolution management","author":"Stojanovic","year":"2002","journal-title":"Knowl Eng Knowl Manage: Ontol Semantic Web"},{"key":"10.1016\/j.jbi.2012.04.009_b0220","doi-asserted-by":"crossref","unstructured":"Sure Y, Erdmann M, Angele J, Staab S, Studer R, Wenke D. Ontoedit: collaborative ontology development for the semantic web. In: Proc of ISWC; 2002. p. 221\u201335.","DOI":"10.1007\/3-540-48005-6_18"},{"issue":"Suppl 1","key":"10.1016\/j.jbi.2012.04.009_b0225","doi-asserted-by":"crossref","first-page":"S3","DOI":"10.1186\/2041-1480-2-S1-S3","article-title":"Mapping between the obo and owl ontology languages","volume":"2","author":"Tirmizi","year":"2011","journal-title":"J Biomed Semantics"},{"key":"10.1016\/j.jbi.2012.04.009_b0230","series-title":"Data integration in the life sciences","first-page":"216","article-title":"Ontology analysis on complexity and evolution based on conceptual model","author":"Yang","year":"2006"},{"key":"10.1016\/j.jbi.2012.04.009_b0235","doi-asserted-by":"crossref","unstructured":"Zhdanova AV, Shvaiko P. Community-driven ontology matching. In: ESWC; 2006. p. 34\u201349.","DOI":"10.1007\/11762256_6"}],"container-title":["Journal of Biomedical Informatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1532046412000627?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1532046412000627?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,6,28]],"date-time":"2019-06-28T08:03:26Z","timestamp":1561709006000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1532046412000627"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,2]]},"references-count":47,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2013,2]]}},"alternative-id":["S1532046412000627"],"URL":"https:\/\/doi.org\/10.1016\/j.jbi.2012.04.009","relation":{},"ISSN":["1532-0464"],"issn-type":[{"value":"1532-0464","type":"print"}],"subject":[],"published":{"date-parts":[[2013,2]]}}}