{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,13]],"date-time":"2025-10-13T08:51:16Z","timestamp":1760345476199},"reference-count":30,"publisher":"Elsevier BV","issue":"1-2","license":[{"start":{"date-parts":[[1997,6,1]],"date-time":"1997-06-01T00:00:00Z","timestamp":865123200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2013,7,17]],"date-time":"2013-07-17T00:00:00Z","timestamp":1374019200000},"content-version":"vor","delay-in-days":5890,"URL":"https:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Theoretical Computer Science"],"published-print":{"date-parts":[[1997,6]]},"DOI":"10.1016\/s0304-3975(96)00137-5","type":"journal-article","created":{"date-parts":[[2003,4,7]],"date-time":"2003-04-07T15:40:02Z","timestamp":1049730002000},"page":"115-137","source":"Crossref","is-referenced-by-count":10,"title":["Multiple sequence comparison \u2014 a peptide matching approach"],"prefix":"10.1016","volume":"180","author":[{"given":"Marie-France","family":"Sagot","sequence":"first","affiliation":[]},{"given":"Alain","family":"Viari","sequence":"additional","affiliation":[]},{"given":"Henri","family":"Soldano","sequence":"additional","affiliation":[]}],"member":"78","reference":[{"year":"1974","series-title":"The Design and Analysis of Computer Algorithms","author":"Aho","key":"10.1016\/S0304-3975(96)00137-5_BIB1"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB2","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1016\/S0022-5193(89)80196-1","article-title":"Gap costs for multiple sequence alignment","volume":"138","author":"Altschul","year":"1989","journal-title":"J. Theor. Biol."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB3","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1137\/0149012","article-title":"Tree, stars, and multiple biological sequence alignment","volume":"49","author":"Altschul","year":"1989","journal-title":"SIAM J. Appl. Math."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB4","doi-asserted-by":"crossref","first-page":"1065","DOI":"10.1006\/jmbi.1993.1105","article-title":"Empirical and structural models for insertions and deletions in the divergent evolution of proteins","volume":"229","author":"Benner","year":"1993","journal-title":"J. Mol. Biol."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB5","first-page":"237","article-title":"Improved sensitivity of biological sequence database searches","volume":"6","author":"Brutlag","year":"1990","journal-title":"Comput. Applic. Biosci."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB6","doi-asserted-by":"crossref","first-page":"1073","DOI":"10.1137\/0148063","article-title":"The multiple sequence alignment problem in biology","volume":"48","author":"Carrillo","year":"1988","journal-title":"SIAM J. Appl. Math."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB7","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1007\/BF02459635","article-title":"A survey of multiple sequence comparison methods","volume":"54","author":"Chan","year":"1992","journal-title":"Bull. Math. Biol."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB8","series-title":"Combinatorial Pattern Matching","first-page":"64","article-title":"Fast identification of approximately matching substrings","author":"Cobbs","year":"1994"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB9","first-page":"345","article-title":"A model of evolutionary change in proteins","volume":"Vol. 5","author":"Dayhoff","year":"1978"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB10","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1007\/BF02099961","article-title":"Protein export in prokaryotes and eukaryotes: indications of a difference in the mechanism of exportation","volume":"24","author":"Gascuel","year":"1986","journal-title":"J. Mol. Evol."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB11","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1007\/BF02460299","article-title":"Efficient method for multiple sequence alignment with guaranteed error bounds","volume":"55","author":"Gusfield","year":"1993","journal-title":"Bull. of Math. Biol."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB12","series-title":"Biocomputing. Informatics and Genome Projects","first-page":"87","article-title":"Comparative sequence analysis: finding genes","author":"Henikoff","year":"1994"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB13","doi-asserted-by":"crossref","first-page":"6565","DOI":"10.1093\/nar\/19.23.6565","article-title":"Automated assembly of protein blocks for database searching","volume":"19","author":"Henikoff","year":"1991","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB14","first-page":"8597","article-title":"Multiple alphabet amino acid sequence comparisons of the immunoglobulin \u03ba-chain constant domain","volume":"82","author":"Karlin","year":"1985"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB15","series-title":"Proc. 4th Annu. ACM Symp. Theory of Computing","first-page":"125","article-title":"Rapid identification of repeated patterns in strings, trees and arrays","author":"Karp","year":"1972"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB16","doi-asserted-by":"crossref","first-page":"890","DOI":"10.1109\/34.31450","article-title":"An algorithm for finding a common structure shared by a family of strings","volume":"11","author":"Landraud","year":"1989","journal-title":"IEEE Trans. Pattern Anal. Mach. Intelligence"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB17","doi-asserted-by":"crossref","first-page":"1683","DOI":"10.1093\/nar\/16.5.1683","article-title":"A flexible multiple sequence alignment program","volume":"16","author":"Martinez","year":"1988","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB18","first-page":"571","article-title":"Comparative analysis of multiple protein-sequence alignment methods","volume":"11","author":"McClure","year":"1994","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB19","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/0968-0004(89)90271-5","article-title":"Nitrogenases without molybdenum","volume":"14","author":"Pau","year":"1989","journal-title":"Trends Biochem. Sci."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB20","doi-asserted-by":"crossref","first-page":"2421","DOI":"10.1093\/nar\/17.7.2421","article-title":"Prediction motifs derived from cytosine methyltransferases","volume":"17","author":"Posfai","year":"1989","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB21","series-title":"Vi\u00f1as del Mar, Chili, Second South American Workshop on String Processing","article-title":"Searching for repeated words in a text allowing for mismatches and gaps","author":"Sagot","year":"1995"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB22","first-page":"59","article-title":"Finding flexible patterns in a text \u2014 An application to 3D molecular matching","volume":"11","author":"Sagot","year":"1995","journal-title":"Comput. Appl. Biosci."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB23","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1137\/0128004","article-title":"Minimum mutation trees of sequences","volume":"28","author":"Sankoff","year":"1975","journal-title":"SIAM J. Appl. Math."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB24","series-title":"Time Warps, String Edits and Macromolecules. The Theory and Practice of Sequence Comparison","first-page":"253","article-title":"Simultaneous comparison of three or more sequences related by a tree","author":"Sankoff","year":"1983"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB25","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1002\/prot.340090304","article-title":"A workbench for multiple alignment construction and analysis","volume":"9","author":"Schuler","year":"1991","journal-title":"Proteins: Struct. Func. Genetics"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB26","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1016\/0167-8655(94)00095-K","article-title":"Searching for flexible repeated patterns using a non transitive similarity relation","volume":"16","author":"Soldano","year":"1995","journal-title":"Pattern Recognition Lett."},{"key":"10.1016\/S0304-3975(96)00137-5_BIB27","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1016\/S0022-5193(86)80075-3","article-title":"The classification of amino acid conservation","volume":"119","author":"Taylor","year":"1986","journal-title":"J. Theoret. Biol."},{"year":"1996","series-title":"SmartMulti: a tool for the multiple alignment of protein sequences using flexible blocks","author":"Viari","key":"10.1016\/S0304-3975(96)00137-5_BIB28"},{"key":"10.1016\/S0304-3975(96)00137-5_BIB29","doi-asserted-by":"crossref","first-page":"473","DOI":"10.1007\/BF02459498","article-title":"General methods of sequence comparison","volume":"46","author":"Waterman","year":"1984","journal-title":"Bull. Math. Biol."},{"year":"1995","series-title":"Introduction to Computational Biology. Maps, Sequences and Genomes","author":"Waterman","key":"10.1016\/S0304-3975(96)00137-5_BIB30"}],"container-title":["Theoretical Computer Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0304397596001375?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0304397596001375?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,4,16]],"date-time":"2019-04-16T08:58:26Z","timestamp":1555405106000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0304397596001375"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[1997,6]]},"references-count":30,"journal-issue":{"issue":"1-2","published-print":{"date-parts":[[1997,6]]}},"alternative-id":["S0304397596001375"],"URL":"https:\/\/doi.org\/10.1016\/s0304-3975(96)00137-5","relation":{},"ISSN":["0304-3975"],"issn-type":[{"type":"print","value":"0304-3975"}],"subject":[],"published":{"date-parts":[[1997,6]]}}}