{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,18]],"date-time":"2026-03-18T04:33:10Z","timestamp":1773808390420,"version":"3.50.1"},"reference-count":40,"publisher":"Elsevier BV","issue":"1-2","license":[{"start":{"date-parts":[[2000,12,1]],"date-time":"2000-12-01T00:00:00Z","timestamp":975628800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Gene"],"published-print":{"date-parts":[[2000,12]]},"DOI":"10.1016\/s0378-1119(00)00459-5","type":"journal-article","created":{"date-parts":[[2002,7,25]],"date-time":"2002-07-25T17:19:02Z","timestamp":1027617542000},"page":"109-121","source":"Crossref","is-referenced-by-count":49,"title":["Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction\u2013modification genes with large genome polymorphisms"],"prefix":"10.1016","volume":"259","author":[{"given":"Akito","family":"Chinen","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ikuo","family":"Uchiyama","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ichizo","family":"Kobayashi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/S0378-1119(00)00459-5_REF1","series-title":"MOLPHY a computer program package for molecular phylogenetics. In: Modelling of molecular evolution and maximum likelihood inference of moecular pyhlogeny","first-page":"57","author":"Adachi","year":"1992"},{"key":"10.1016\/S0378-1119(00)00459-5_REF2","doi-asserted-by":"crossref","first-page":"176","DOI":"10.1038\/16495","article-title":"Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori","volume":"397","author":"Alm","year":"1999","journal-title":"Nature"},{"key":"10.1016\/S0378-1119(00)00459-5_REF3","first-page":"2037","article-title":"A restriction endonuclease analysis of the bacterial plasmid controlling the EcoRI restriction and modification of DNA","volume":"35","author":"Betlach","year":"1976","journal-title":"Fed. Proc."},{"key":"10.1016\/S0378-1119(00)00459-5_REF4","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/0378-1119(94)00734-A","article-title":"A transposon-like sequence adjacent to the AccI restriction\u2013modification operon","volume":"157","author":"Brassard","year":"1995","journal-title":"Gene"},{"key":"10.1016\/S0378-1119(00)00459-5_REF5","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1080\/713803519","article-title":"Is the HemK family of putative S-adenosylmethionine-dependent methyltransferases a \u2018missing\u2019 zeta subfamily of adenine methyltransferases? A hypothesis","volume":"48","author":"Bujnicki","year":"1999","journal-title":"IUBMB Life"},{"key":"10.1016\/S0378-1119(00)00459-5_REF6","doi-asserted-by":"crossref","first-page":"1058","DOI":"10.1126\/science.273.5278.1058","article-title":"Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii","volume":"273","author":"Bult","year":"1996","journal-title":"Science"},{"key":"10.1016\/S0378-1119(00)00459-5_REF7","doi-asserted-by":"crossref","first-page":"2124","DOI":"10.1126\/science.284.5423.2124","article-title":"Phylogenetic classification and the universal tree","volume":"284","author":"Doolittle","year":"1999","journal-title":"Science"},{"key":"10.1016\/S0378-1119(00)00459-5_REF8","doi-asserted-by":"crossref","first-page":"368","DOI":"10.1007\/BF01734359","article-title":"Evolutionary trees from DNA sequences: a maximum likelihood approach","volume":"17","author":"Felsenstein","year":"1981","journal-title":"J. Mol. Evol."},{"key":"10.1016\/S0378-1119(00)00459-5_REF9","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1126\/science.7542800","article-title":"Whole-genome random sequencing and assembly of Haemophilus influenzae Rd","volume":"269","author":"Fleischmann","year":"1995","journal-title":"Science"},{"key":"10.1016\/S0378-1119(00)00459-5_REF10","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1016\/S0168-9525(97)01224-9","article-title":"PEDANTic genome analysis","volume":"13","author":"Frishman","year":"1997","journal-title":"Trends Genet."},{"key":"10.1016\/S0378-1119(00)00459-5_REF11","doi-asserted-by":"crossref","first-page":"3116","DOI":"10.1073\/pnas.83.10.3116","article-title":"Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells","volume":"83","author":"Gerdes","year":"1986","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/S0378-1119(00)00459-5_REF12","doi-asserted-by":"crossref","first-page":"931","DOI":"10.1016\/S0300-9084(99)00201-1","article-title":"Post-segregational killing by restriction modification gene complexes: observations of individual cell deaths","volume":"81","author":"Handa","year":"1999","journal-title":"Biochimie"},{"key":"10.1016\/S0378-1119(00)00459-5_REF13","doi-asserted-by":"crossref","first-page":"2218","DOI":"10.1128\/JB.182.8.2218-2229.2000","article-title":"Cellular responses to postsegregational killing by restriction\u2013modification genes","volume":"182","author":"Handa","year":"2000","journal-title":"J. Bacteriol."},{"key":"10.1016\/S0378-1119(00)00459-5_REF14","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0022-2836(83)80239-3","article-title":"DNA restriction\u2013modification genes of phage P1 and plasmid p15B. Structure and in vitro transcription","volume":"165","author":"Iida","year":"1983","journal-title":"J. Mol. Biol."},{"key":"10.1016\/S0378-1119(00)00459-5_REF15","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1128\/JB.163.3.841-849.1985","article-title":"Effects of the ccd function of the F plasmid on bacterial growth","volume":"163","author":"Jaffe","year":"1985","journal-title":"J. Bacteriol."},{"key":"10.1016\/S0378-1119(00)00459-5_REF16","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/0378-1119(95)00181-5","article-title":"Evidence for an evolutionary relationship among type-II restriction endonucleases","volume":"160","author":"Jeltsch","year":"1995","journal-title":"Gene"},{"key":"10.1016\/S0378-1119(00)00459-5_REF17","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1007\/BF02198833","article-title":"Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction\u2013modification systems","volume":"42","author":"Jeltsch","year":"1996","journal-title":"J. Mol. Evol."},{"key":"10.1016\/S0378-1119(00)00459-5_REF18","doi-asserted-by":"crossref","first-page":"1341","DOI":"10.1046\/j.1365-2958.1998.01008.x","article-title":"Codon usages in different gene classes of the Escherichia coli genome","volume":"29","author":"Karlin","year":"1998","journal-title":"Mol. Microbiol."},{"key":"10.1016\/S0378-1119(00)00459-5_REF19","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1016\/0378-1119(93)90756-S","article-title":"Analysis of the nucleotide and derived amino acid sequences of the SsoII restriction endonuclease and methyltransferase","volume":"124","author":"Karyagina","year":"1993","journal-title":"Gene"},{"key":"10.1016\/S0378-1119(00)00459-5_REF20","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1093\/dnares\/5.2.55","article-title":"Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3","volume":"5","author":"Kawarabayasi","year":"1998","journal-title":"DNA Res."},{"key":"10.1016\/S0378-1119(00)00459-5_REF21","doi-asserted-by":"crossref","first-page":"368","DOI":"10.1016\/S0168-9525(98)01532-7","article-title":"Selfishness and death: raison d'\u00eatre of restriction, recombination and mitochondria","volume":"14","author":"Kobayashi","year":"1998","journal-title":"Trends Genet."},{"key":"10.1016\/S0378-1119(00)00459-5_REF22","doi-asserted-by":"crossref","first-page":"649","DOI":"10.1016\/S0959-437X(99)00026-X","article-title":"Shaping the genome \u2014 restriction\u2013modification systems as mobile genetic elements","volume":"9","author":"Kobayashi","year":"1999","journal-title":"Curr. Opin. Genet. Dev."},{"key":"10.1016\/S0378-1119(00)00459-5_REF23","doi-asserted-by":"crossref","first-page":"11095","DOI":"10.1073\/pnas.92.24.11095","article-title":"Restriction\u2013modification systems as genomic parasites in competition for specific sequences","volume":"92","author":"Kusano","year":"1995","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/S0378-1119(00)00459-5_REF24","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1006\/jmbi.1995.0577","article-title":"Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes","volume":"253","author":"Malone","year":"1995","journal-title":"J. Mol. Biol."},{"key":"10.1016\/S0378-1119(00)00459-5_REF25","doi-asserted-by":"crossref","first-page":"314","DOI":"10.1111\/j.1749-6632.1999.tb08893.x","article-title":"Detecting alien genes in bacterial genomes","volume":"870","author":"Mr\u00e1zek","year":"1999","journal-title":"Ann. NY Acad. Sci."},{"key":"10.1016\/S0378-1119(00)00459-5_REF26","doi-asserted-by":"crossref","first-page":"897","DOI":"10.1126\/science.7846533","article-title":"Selfish behavior of restriction\u2013modification systems","volume":"267","author":"Naito","year":"1995","journal-title":"Science"},{"key":"10.1016\/S0378-1119(00)00459-5_REF27","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1515\/bchm.1998.379.4-5.429","article-title":"Selfish restriction modification genes: Resistance of a resident R\/M plasmid to displacement by an incompatible plasmid mediated by host killing","volume":"379","author":"Naito","year":"1998","journal-title":"Biol. Chem."},{"key":"10.1016\/S0378-1119(00)00459-5_REF28","doi-asserted-by":"crossref","first-page":"6442","DOI":"10.1073\/pnas.95.11.6442","article-title":"Restriction\u2013modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion","volume":"95","author":"Nakayama","year":"1998","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/S0378-1119(00)00459-5_REF29","series-title":"Insertion with long tagret duplication: a novel mechanism for bacterial gene mobility suggested from genome comparison","first-page":"346","author":"Nobusato","year":"1999"},{"key":"10.1016\/S0378-1119(00)00459-5_REF30","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1016\/S0378-1119(00)00455-8","article-title":"Diversity of restriction-modification gene homologues in Helicobacter pylori","volume":"259","author":"Nobusato","year":"2000","journal-title":"Gene"},{"key":"10.1016\/S0378-1119(00)00459-5_REF31","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/S0378-1119(00)00456-X","article-title":"Insertion with long target duplications: a mechanism for gene mobility suggested from comparison of two related bacterial genomes","volume":"259","author":"Nobusato","year":"2000","journal-title":"Gene"},{"key":"10.1016\/S0378-1119(00)00459-5_REF32","first-page":"357","article-title":"TREEVIEW: An application to display phylogenetic trees on personal computers","volume":"12","author":"Page","year":"1996","journal-title":"Comput. Appl. Biosci."},{"key":"10.1016\/S0378-1119(00)00459-5_REF33","doi-asserted-by":"crossref","first-page":"306","DOI":"10.1093\/nar\/28.1.306","article-title":"REBASE-restriction enzymes and methylases","volume":"28","author":"Roberts","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0378-1119(00)00459-5_REF34","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1007\/s004380050582","article-title":"Transposon-like structure of a new plasmid-encoded restriction\u2013modification system in Rhizobium leguminosarum VF39SM","volume":"256","author":"Rochepeau","year":"1997","journal-title":"Mol. Gen. Genet."},{"key":"10.1016\/S0378-1119(00)00459-5_REF35","doi-asserted-by":"crossref","first-page":"7585","DOI":"10.1073\/pnas.88.17.7585","article-title":"Integration of DNA fragments by illegitimate recombination in Saccharomyces cerevisiae","volume":"88","author":"Schiestl","year":"1991","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/S0378-1119(00)00459-5_REF36","first-page":"575","article-title":"Sequence similarities between the genes encoding the S.NgoI and HaeII restriction\/modification systems","volume":"379","author":"Stein","year":"1998","journal-title":"Biol. Chem."},{"key":"10.1016\/S0378-1119(00)00459-5_REF37","doi-asserted-by":"crossref","first-page":"4673","DOI":"10.1093\/nar\/22.22.4673","article-title":"CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice","volume":"22","author":"Thompson","year":"1994","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0378-1119(00)00459-5_REF38","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1038\/41483","article-title":"The complete genome sequence of the gastric pathogen Helicobacter pylori","volume":"388","author":"Tomb","year":"1997","journal-title":"Nature"},{"key":"10.1016\/S0378-1119(00)00459-5_REF39","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1016\/0378-1119(94)00793-R","article-title":"Identification of a gene encoding a DNA invertase-like enzyme adjacent to the PaeR7I restriction\u2013modification system","volume":"157","author":"Vaisvila","year":"1995","journal-title":"Gene"},{"key":"10.1016\/S0378-1119(00)00459-5_REF40","doi-asserted-by":"crossref","first-page":"226","DOI":"10.1007\/s004380050890","article-title":"Cloning and expression of the ApaLI, NspI, NspHI, SacI, ScaI and SapI restriction\u2013modification systems in Escherichia coli","volume":"260","author":"Xu","year":"1998","journal-title":"Mol. Gen. Genet."}],"container-title":["Gene"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378111900004595?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0378111900004595?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,1,13]],"date-time":"2020-01-13T06:42:02Z","timestamp":1578897722000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0378111900004595"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2000,12]]},"references-count":40,"journal-issue":{"issue":"1-2","published-print":{"date-parts":[[2000,12]]}},"alternative-id":["S0378111900004595"],"URL":"https:\/\/doi.org\/10.1016\/s0378-1119(00)00459-5","relation":{},"ISSN":["0378-1119"],"issn-type":[{"value":"0378-1119","type":"print"}],"subject":[],"published":{"date-parts":[[2000,12]]}}}