{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,13]],"date-time":"2026-01-13T14:26:28Z","timestamp":1768314388756,"version":"3.49.0"},"reference-count":36,"publisher":"Elsevier BV","issue":"7-8","license":[{"start":{"date-parts":[[2003,7,1]],"date-time":"2003-07-01T00:00:00Z","timestamp":1057017600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2003,7,1]],"date-time":"2003-07-01T00:00:00Z","timestamp":1057017600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Parallel and Distributed Computing"],"published-print":{"date-parts":[[2003,7]]},"DOI":"10.1016\/s0743-7315(03)00129-1","type":"journal-article","created":{"date-parts":[[2003,9,22]],"date-time":"2003-09-22T16:37:21Z","timestamp":1064248641000},"page":"719-727","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":23,"title":["Molecular phylogenetics: parallelized parameter estimation and quartet puzzling"],"prefix":"10.1016","volume":"63","author":[{"given":"H.A.","family":"Schmidt","sequence":"first","affiliation":[]},{"given":"E.","family":"Petzold","sequence":"additional","affiliation":[]},{"given":"M.","family":"Vingron","sequence":"additional","affiliation":[]},{"given":"A.","family":"von Haeseler","sequence":"additional","affiliation":[]}],"member":"78","reference":[{"key":"10.1016\/S0743-7315(03)00129-1_BIB1","unstructured":"J. Adachi, M. Hasegawa, MOLPHY Version 2.3\u2014Programs for Molecular Phylogenetics Based on Maximum Likelihood, Computer Science Monographs, Vol. 28, Institute of Statistical Mathematics, Minato-ku, Tokyo, 1996."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB2","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1093\/nar\/28.1.45","article-title":"The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000","volume":"28","author":"Bairoch","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB3","doi-asserted-by":"crossref","first-page":"224","DOI":"10.2307\/2413432","article-title":"Computational complexity of inferring phylogenies by compatibility","volume":"35","author":"Day","year":"1986","journal-title":"Syst. Zool."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB4","doi-asserted-by":"crossref","first-page":"2360","DOI":"10.1093\/nar\/22.12.2360","article-title":"HOVERGEN, a database of homologous vertebrate genes","volume":"22","author":"Duret","year":"1994","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB5","unstructured":"E. Edmiston, R.A. Wagner, Parallelization of the dynamic programming algorithm for comparison of sequences, in: Proceedings of the 1987 International Conference on Parallel Processing, Penn State Press, PA, 1987, pp. 78\u201380."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB6","series-title":"Task Scheduling in Parallel and Distributed Systems","author":"El-Rewini","year":"1994"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB7","doi-asserted-by":"crossref","first-page":"27","DOI":"10.2307\/2412810","article-title":"The number of evolutionary trees","volume":"27","author":"Felsenstein","year":"1978","journal-title":"Syst. Zool."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB8","doi-asserted-by":"crossref","first-page":"368","DOI":"10.1007\/BF01734359","article-title":"Evolutionary trees from DNA sequences","volume":"17","author":"Felsenstein","year":"1981","journal-title":"J. Mol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB9","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/0025-5564(82)90125-0","article-title":"Unlikelihood that minimal phylogenies for a realistic biological study can be constructed in reasonable computational time","volume":"60","author":"Graham","year":"1982","journal-title":"Math. Biosci."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB10","doi-asserted-by":"crossref","unstructured":"W. Gropp, S. Huss-Lederman, A. Lumsdaine, E. Lusk, B. Nitzberg, W. Saphir, M. Snir, MPI: The Complete Reference\u2014The MPI Extensions, Vol. 2, 2nd Edition, The MIT Press, Cambridge, MA, 1998.","DOI":"10.7551\/mitpress\/4789.001.0001"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB11","first-page":"546","article-title":"Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites","volume":"12","author":"Gu","year":"1995","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB12","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1006\/jpdc.1997.1411","article-title":"Allocating independent tasks to parallel processors","volume":"47","author":"Hagerup","year":"1997","journal-title":"J. Parallel Distrib. Comput."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB13","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1007\/BF02101694","article-title":"Dating of the human\u2013ape splitting by a molecular clock of mitochondrial DNA","volume":"22","author":"Hasegawa","year":"1985","journal-title":"J. Mol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB14","doi-asserted-by":"crossref","first-page":"754","DOI":"10.1093\/bioinformatics\/17.8.754","article-title":"MRBAYES","volume":"17","author":"Huelsenbeck","year":"2001","journal-title":"Bioinformatics"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB15","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1093\/nar\/30.1.299","article-title":"SYSTERS, GeneNest, SpliceNest","volume":"30","author":"Krause","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB16","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1093\/oxfordjournals.molbev.a025924","article-title":"A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data","volume":"15","author":"Lewis","year":"1998","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB17","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1093\/nar\/29.1.173","article-title":"The RDP-II (ribosomal database project)","volume":"29","author":"Maidak","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB18","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1016\/0165-4896(83)90099-9","article-title":"Consensus functions defined on trees","volume":"4","author":"McMorris","year":"1983","journal-title":"Math. Soc. Sci"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB19","doi-asserted-by":"crossref","first-page":"1103","DOI":"10.1093\/genetics\/152.3.1103","article-title":"Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA","volume":"152","author":"Meyer","year":"1999","journal-title":"Genetics"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB20","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1093\/molbev\/msg019","article-title":"Identifying site-specific substitution","volume":"20","author":"Meyer","year":"2003","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB21","first-page":"41","article-title":"fastDNAml","volume":"10","author":"Olsen","year":"1994","journal-title":"Comput. Appl. Biosci."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB22","first-page":"235","article-title":"Seq-Gen","volume":"13","author":"Rambaut","year":"1997","journal-title":"Comput. Appl. Biosci."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB23","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1080\/106351501750107413","article-title":"Stochastic search strategy for estimation of maximum likelihood phylogenetic trees","volume":"50","author":"Salter","year":"2001","journal-title":"Syst. Biol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB24","first-page":"406","article-title":"The neighbor-joining method","volume":"4","author":"Saitou","year":"1987","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB25","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1093\/bioinformatics\/18.3.502","article-title":"TREE-PUZZLE","volume":"18","author":"Schmidt","year":"2002","journal-title":"Bioinformatics"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB26","unstructured":"M. Snir, S.W. Otto, S. Huss-Lederman, D.W. Walker. J. Dongarra. MPI: The Complete Reference\u2014The MPI Core, Vol. 1, 2nd Edition, The MIT Press, Cambridge, MA, 1998."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB27","doi-asserted-by":"crossref","unstructured":"A.P. Stamatakis, T. Ludwig, H. Meier, M. J. Wolf, AxML: a fast program for sequential and parallel phylogenetic tree computations based on the maximum likelihood method, in: Proceedings of the first IEEE Computer Society Bioinformatics Conference\u2014CSB2002, Palo Alto, 2002, pp. 21\u201328.","DOI":"10.1109\/CSB.2002.1039325"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB28","doi-asserted-by":"crossref","unstructured":"C.A. Stewart, D. Hart, D.K. Berry, E. A. Olsen, G.J. Wernert, W. Fischer, Parallel implementation and performance of fastDNAml\u2014a program for maximum likelihood phylogenetic inference, in: Proceedings of the International Conference on High Performance Computing and Communications\u2014SC2001, 2001, pp. 191\u2013201.","DOI":"10.1145\/582034.582054"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB29","doi-asserted-by":"crossref","first-page":"964","DOI":"10.1093\/oxfordjournals.molbev.a025664","article-title":"Quartet puzzling","volume":"13","author":"Strimmer","year":"1996","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB30","unstructured":"K.S. Strimmer, Maximum likelihood methods in molecular phylogenetics, Ph.D. Thesis, Ludwig-Maximilians-Universit\u00e4t, M\u00fcnchen, Germany, 1997."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB31","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1093\/oxfordjournals.molbev.a025756","article-title":"Bayesian probabilities and quartet puzzling","volume":"14","author":"Strimmer","year":"1997","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB32","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1093\/nar\/30.1.21","article-title":"The EMBL nucleotide sequence database","volume":"30","author":"Stoesser","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB33","unstructured":"D.L. Swofford, G.J. Olsen, P.J. Waddell, D.M. Hillis, Phylogeny reconstruction, in: D.M. Hillis, C. Moritz, B.K. Mable (Eds.), Molecular Systematics, 2nd Edition, Sinauer Associates, Sunderland, MA, 1996, pp. 407\u2013514."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB34","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1093\/bib\/2.2.181","article-title":"On the parallelisation of bioinformatics applications","volume":"2","author":"Trelles","year":"2001","journal-title":"Brief. Bioinform."},{"key":"10.1016\/S0743-7315(03)00129-1_BIB35","doi-asserted-by":"crossref","first-page":"544","DOI":"10.1093\/bioinformatics\/14.6.544","article-title":"Application note","volume":"14","author":"Trelles","year":"1998","journal-title":"Bioinformatics"},{"key":"10.1016\/S0743-7315(03)00129-1_BIB36","doi-asserted-by":"crossref","first-page":"650","DOI":"10.1093\/oxfordjournals.molbev.a025625","article-title":"Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites","volume":"13","author":"Yang","year":"1994","journal-title":"Mol. Biol. Evol."}],"container-title":["Journal of Parallel and Distributed Computing"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0743731503001291?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0743731503001291?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,9]],"date-time":"2025-10-09T21:51:59Z","timestamp":1760046719000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0743731503001291"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,7]]},"references-count":36,"journal-issue":{"issue":"7-8","published-print":{"date-parts":[[2003,7]]}},"alternative-id":["S0743731503001291"],"URL":"https:\/\/doi.org\/10.1016\/s0743-7315(03)00129-1","relation":{},"ISSN":["0743-7315"],"issn-type":[{"value":"0743-7315","type":"print"}],"subject":[],"published":{"date-parts":[[2003,7]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Molecular phylogenetics: parallelized parameter estimation and quartet puzzling","name":"articletitle","label":"Article Title"},{"value":"Journal of Parallel and Distributed Computing","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/S0743-7315(03)00129-1","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"converted-article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2003 Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}