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However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Genome Tuner, a hybrid of circular map and comparative map tools. Its capability of viewing comparisons between multiple circular maps in a 3D space offers great benefits to the study of comparative genomics. The program is freely available (under an LGPL licence) at http:\/\/sourceforge.net\/projects\/dgenometuner.<\/jats:p>","DOI":"10.1016\/s1672-0229(08)60043-1","type":"journal-article","created":{"date-parts":[[2009,11,28]],"date-time":"2009-11-28T02:52:42Z","timestamp":1259376762000},"page":"143-146","source":"Crossref","is-referenced-by-count":1,"title":["3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context"],"prefix":"10.1093","volume":"7","author":[{"given":"Qi","family":"Wang","sequence":"first","affiliation":[{"name":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing, 100029 , China"},{"name":"Graduate University of Chinese Academy of Sciences , Beijing, 100049 , China"}]},{"given":"Qun","family":"Liang","sequence":"additional","affiliation":[{"name":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing, 100029 , China"},{"name":"Graduate University of Chinese Academy of Sciences , Beijing, 100049 , China"}]},{"given":"Xiuqing","family":"Zhang","sequence":"additional","affiliation":[{"name":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing, 100029 , China"},{"name":"Beijing Genomics Institute at Shenzhen , Shenzhen, 518083 , China"}]}],"member":"286","published-online":{"date-parts":[[2009,11,25]]},"reference":[{"key":"2024051008261355500_bib1","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1038\/416697a","article-title":"Biodiversity: microbial genomes multiply","volume":"416","author":"Doolittle","year":"2002","journal-title":"Nature"},{"key":"2024051008261355500_bib2","doi-asserted-by":"crossref","first-page":"2369","DOI":"10.1093\/nar\/27.11.2369","article-title":"Alignment of whole genomes","volume":"27","author":"Delcher","year":"1999","journal-title":"Nucleic Acids Res."},{"key":"2024051008261355500_bib3","doi-asserted-by":"crossref","first-page":"1394","DOI":"10.1101\/gr.2289704","article-title":"Mauve: multiple alignment of conserved genomic sequence with rearrangements","volume":"14","author":"Darling","year":"2004","journal-title":"Genome Res."},{"key":"2024051008261355500_bib4","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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