{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,20]],"date-time":"2026-01-20T01:48:44Z","timestamp":1768873724327,"version":"3.49.0"},"reference-count":35,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2018,3,1]],"date-time":"2018-03-01T00:00:00Z","timestamp":1519862400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2018,3,1]],"date-time":"2018-03-01T00:00:00Z","timestamp":1519862400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2017,12,14]],"date-time":"2017-12-14T00:00:00Z","timestamp":1513209600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000865","name":"Bill and Melinda Gates Foundation","doi-asserted-by":"publisher","award":["OPP1028843"],"award-info":[{"award-number":["OPP1028843"]}],"id":[{"id":"10.13039\/100000865","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Analytical Biochemistry"],"published-print":{"date-parts":[[2018,3]]},"DOI":"10.1016\/j.ab.2017.12.008","type":"journal-article","created":{"date-parts":[[2017,12,8]],"date-time":"2017-12-08T16:58:42Z","timestamp":1512752322000},"page":"64-71","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":20,"special_numbering":"C","title":["Paper-based detection of HIV-1 drug resistance using isothermal amplification and an oligonucleotide ligation assay"],"prefix":"10.1016","volume":"544","author":[{"given":"Mary E.","family":"Natoli","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brittany A.","family":"Rohrman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Carolina","family":"De Santiago","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gert U.","family":"van Zyl","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2347-9467","authenticated-orcid":false,"given":"Rebecca R.","family":"Richards-Kortum","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.ab.2017.12.008_bib1","series-title":"Global AIDS Update 2016","author":"UNAIDS","year":"2016"},{"key":"10.1016\/j.ab.2017.12.008_bib2","series-title":"Fact Sheet - Latest Global and Regional Statistics on the Status of the AIDS Epidemic","author":"UNAIDS","year":"2017"},{"key":"10.1016\/j.ab.2017.12.008_bib3","series-title":"Consolidated Guidelines on the Use of Antiretroviral Drugs for Treating and Preventing HIV Infection: Recommendations for a Public Health Approach","author":"World Health Organization","year":"2016"},{"key":"10.1016\/j.ab.2017.12.008_bib4","series-title":"90-90-90 an Ambitious Treatment Target to Help End the AIDS Epidemic","first-page":"40","author":"UNAIDS","year":"2014"},{"key":"10.1016\/j.ab.2017.12.008_bib5","series-title":"HIV Drug Resistance Report 2017","author":"World Health Organization","year":"2017"},{"key":"10.1016\/j.ab.2017.12.008_bib6","series-title":"Virological Follow-up of Adult Patients in Antiretroviral Treatment Programmes in Sub-Saharan Africa: a Systematic Review","author":"Barth","year":"2010"},{"key":"10.1016\/j.ab.2017.12.008_bib7","doi-asserted-by":"crossref","first-page":"377","DOI":"10.2471\/BLT.12.112946","article-title":"Viral suppression after 12 months of antiretroviral therapy in low- and middle-income countries: a systematic review","volume":"91","author":"McMahon","year":"2013","journal-title":"Bull. World Health Organ."},{"key":"10.1016\/j.ab.2017.12.008_bib8","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1093\/cid\/cit627","article-title":"Extraordinary heterogeneity of virological outcomes in patients receiving highly antiretroviral therapy and monitored with the world health organization public health approach in sub-Saharan Africa and southeast Asia","volume":"58","author":"Aghokeng","year":"2014","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.ab.2017.12.008_bib9","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1097\/QAI.0b013e318227fc34","article-title":"Unnecessary antiretroviral treatment switches and accumulation of HIV resistance mutations; two arguments for viral load monitoring in Africa","volume":"58","author":"Sigaloff","year":"2011","journal-title":"J.\u00a0Acquir. Immune Defic. Syndr."},{"key":"10.1016\/j.ab.2017.12.008_bib10","series-title":"Joint United Nations Programme on HIV\/AIDS (UNAIDS)","year":"2014"},{"key":"10.1016\/j.ab.2017.12.008_bib11","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0145772","article-title":"HIV-1 drug resistance mutations: potential applications for point-of-care genotypic resistance testing","volume":"10","author":"Rhee","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.ab.2017.12.008_bib12","doi-asserted-by":"crossref","first-page":"292","DOI":"10.1016\/j.meegid.2016.08.031","article-title":"HIV-1 drug resistance and resistance testing","volume":"46","author":"Clutter","year":"2016","journal-title":"Infect. Genet. Evol."},{"key":"10.1016\/j.ab.2017.12.008_bib13","doi-asserted-by":"crossref","first-page":"947","DOI":"10.1373\/clinchem.2015.245829","article-title":"Recombinase polymerase amplification for diagnostic applications","volume":"62","author":"Daher","year":"2016","journal-title":"Clin. Chem."},{"key":"10.1016\/j.ab.2017.12.008_bib14","doi-asserted-by":"crossref","first-page":"5615","DOI":"10.1021\/ac5011298","article-title":"Quantification of HIV-1 DNA using real- time recombinase polymerase amplification","volume":"86","author":"Crannell","year":"2014","journal-title":"Anal. Chem."},{"key":"10.1016\/j.ab.2017.12.008_bib15","doi-asserted-by":"crossref","first-page":"3082","DOI":"10.1039\/c2lc40423k","article-title":"A\u00a0paper and plastic device for performing recombinase polymerase amplification of HIV DNA","volume":"12","author":"Rohrman","year":"2012","journal-title":"Lab Chip"},{"key":"10.1016\/j.ab.2017.12.008_bib16","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.00135-13","article-title":"Rapid detection of HIV-1 proviral DNA for early infant diagnosis using rapid detection of HIV-1 proviral DNA for early infant diagnosis","volume":"4","author":"Boyle","year":"2013","journal-title":"MBio"},{"key":"10.1016\/j.ab.2017.12.008_bib17","doi-asserted-by":"crossref","first-page":"1115","DOI":"10.1371\/journal.pbio.0040204","article-title":"DNA detection using recombination proteins","volume":"4","author":"Piepenburg","year":"2006","journal-title":"PLoS Biol."},{"key":"10.1016\/j.ab.2017.12.008_bib18","doi-asserted-by":"crossref","first-page":"1456","DOI":"10.1128\/AAC.47.4.1456-1459.2003","article-title":"PCR-oligonucleotide ligation assay for detection of point mutations associated with quinolone resistance in Streptococcus pneumoniae","volume":"47","author":"Bui","year":"2003","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.ab.2017.12.008_bib19","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1128\/JCM.36.2.569-572.1998","article-title":"Oligonucleotide ligation assay for detecting mutations in the human immunodeficiency virus type 1 pol gene that are associated with resistance to zidovudine, didanosine, and lamivudine","volume":"36","author":"Edelstein","year":"1998","journal-title":"J.\u00a0Clin. Microbiol."},{"key":"10.1016\/j.ab.2017.12.008_bib20","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1021\/ac801870x","article-title":"Identification of single-nucleotide polymorphisms by the oligonucleotide ligation reaction: a DNA biosensor for simultaneous visual detection of both alleles","volume":"81","author":"Toubanaki","year":"2009","journal-title":"Anal. Chem."},{"key":"10.1016\/j.ab.2017.12.008_bib21","doi-asserted-by":"crossref","first-page":"2320","DOI":"10.1128\/JCM.00306-14","article-title":"Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencing","volume":"52","author":"Beck","year":"2014","journal-title":"J.\u00a0Clin. Microbiol."},{"key":"10.1016\/j.ab.2017.12.008_bib22","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0145962","article-title":"Simplified paper format for detecting HIV drug resistance in clinical specimens by oligonucleotide ligation","volume":"11","author":"Panpradist","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.ab.2017.12.008_bib23","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1016\/j.vetpar.2007.08.010","article-title":"Development and application of nested PCR assay for detection of dairy cattle-derived cyclospora sp","volume":"149","author":"Min Xiao","year":"2007","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ab.2017.12.008_bib24","doi-asserted-by":"crossref","first-page":"4574","DOI":"10.1021\/ac300689s","article-title":"Two-dimensional paper network format that enables simple multistep assays for use in low-resource settings in the context of malaria antigen detection","volume":"84","author":"Fu","year":"2012","journal-title":"Anal. Chem."},{"key":"10.1016\/j.ab.2017.12.008_bib25","doi-asserted-by":"crossref","first-page":"2553","DOI":"10.1021\/acs.analchem.5b03999","article-title":"Highly sensitive two-dimensional paper network incorporating biotin-streptavidin for the detection of malaria","volume":"88","author":"Grant","year":"2016","journal-title":"Anal. Chem."},{"key":"10.1016\/j.ab.2017.12.008_bib26","doi-asserted-by":"crossref","first-page":"1456","DOI":"10.1039\/C3AN02296J","article-title":"Long-term dry storage of an enzyme-based reagent system for ELISA in point-of-care devices","volume":"139","author":"Ramachandran","year":"2014","journal-title":"Analyst"},{"key":"10.1016\/j.ab.2017.12.008_bib27","doi-asserted-by":"crossref","first-page":"7400","DOI":"10.1093\/nar\/gkq655","article-title":"Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies","volume":"38","author":"Zagordi","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ab.2017.12.008_bib28","doi-asserted-by":"crossref","first-page":"2581","DOI":"10.1128\/JCM.00756-15","article-title":"Long-Range HIV Genotyping Using Viral RNA and Proviral DNA For analysis of HIV drug resistance and HIV clustering","volume":"53","author":"Novitsky","year":"2015","journal-title":"J.\u00a0Clin. Microbiol."},{"key":"10.1016\/j.ab.2017.12.008_bib29","article-title":"Trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis","volume":"12","author":"Rhee","year":"2015","journal-title":"PLoS Med."},{"key":"10.1016\/j.ab.2017.12.008_bib30","doi-asserted-by":"crossref","first-page":"3777","DOI":"10.1039\/C6LC00677A","article-title":"A\u00a0rapid, instrument-free, sample-to-result nucleic acid amplification test","volume":"16","author":"Lafleur","year":"2014","journal-title":"Lab Chip"},{"key":"10.1016\/j.ab.2017.12.008_bib31","doi-asserted-by":"crossref","first-page":"411","DOI":"10.3109\/07388551.2016.1164664","article-title":"Advances in paper-based sample pretreatment for point-of-care testing","volume":"37","author":"Tang","year":"2017","journal-title":"Crit. Rev. Biotechnol."},{"key":"10.1016\/j.ab.2017.12.008_bib32","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1146\/annurev-bioeng-071114-040538","article-title":"Microfluidic sample preparation for medical diagnostics","volume":"17","author":"Cui","year":"2015","journal-title":"Annu. Rev. Biomed. Eng."},{"key":"10.1016\/j.ab.2017.12.008_bib33","doi-asserted-by":"crossref","first-page":"7872","DOI":"10.1021\/acs.analchem.5b01594","article-title":"Paper-based RNA extraction, in situ isothermal amplification, and lateral flow detection for low-cost, rapid diagnosis of influenza a (H1N1) from clinical specimens","volume":"87","author":"Rodriguez","year":"2015","journal-title":"Anal. Chem."},{"key":"10.1016\/j.ab.2017.12.008_bib34","doi-asserted-by":"crossref","first-page":"1963","DOI":"10.1021\/ac504365v","article-title":"Inhibition of Recombinase polymerase amplification by background DNA: a lateral flow-based method for enriching target DNA","volume":"87","author":"Rohrman","year":"2015","journal-title":"Anal. Chem."},{"key":"10.1016\/j.ab.2017.12.008_bib35","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0019738","article-title":"A\u00a0simple, inexpensive device for nucleic acid amplification without electricity-toward instrument-free molecular diagnostics in low-resource settings","volume":"6","author":"LaBarre","year":"2011","journal-title":"PLoS One"}],"container-title":["Analytical Biochemistry"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0003269717305018?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0003269717305018?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,12]],"date-time":"2025-09-12T21:21:26Z","timestamp":1757712086000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0003269717305018"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,3]]},"references-count":35,"alternative-id":["S0003269717305018"],"URL":"https:\/\/doi.org\/10.1016\/j.ab.2017.12.008","relation":{},"ISSN":["0003-2697"],"issn-type":[{"value":"0003-2697","type":"print"}],"subject":[],"published":{"date-parts":[[2018,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Paper-based detection of HIV-1 drug resistance using isothermal amplification and an oligonucleotide ligation assay","name":"articletitle","label":"Article Title"},{"value":"Analytical Biochemistry","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ab.2017.12.008","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2017 The Authors. Published by Elsevier Inc.","name":"copyright","label":"Copyright"}]}}