{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T15:53:24Z","timestamp":1792166004221,"version":"4.4.0"},"reference-count":651,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,12,6]],"date-time":"2026-12-06T00:00:00Z","timestamp":1796515200000},"content-version":"am","delay-in-days":308,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["MCB 2045493"],"award-info":[{"award-number":["MCB 2045493"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["R35GM128873"],"award-info":[{"award-number":["R35GM128873"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000861","name":"Burroughs Wellcome Fund","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000861","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000152","name":"National Science Foundation Division of Molecular and Cellular Biosciences","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000152","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000051","name":"National Human Genome Research Institute","doi-asserted-by":"publisher","award":["T32HG002760"],"award-info":[{"award-number":["T32HG002760"]}],"id":[{"id":"10.13039\/100000051","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["R01AI154940"],"award-info":[{"award-number":["R01AI154940"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Advanced Drug Delivery Reviews"],"published-print":{"date-parts":[[2026,2]]},"DOI":"10.1016\/j.addr.2025.115740","type":"journal-article","created":{"date-parts":[[2025,11,28]],"date-time":"2025-11-28T00:48:03Z","timestamp":1764290883000},"page":"115740","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["Microbial heterogeneity-mediated treatment evasion and the potential for engineered live biotherapeutic products"],"prefix":"10.1016","volume":"229","author":[{"given":"Eli G.","family":"Cytrynbaum","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Megan N.","family":"McClean","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0005","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1038\/nrmicro3380","article-title":"Molecular mechanisms of antibiotic resistance","volume":"13","author":"Blair","year":"2015","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb0010","article-title":"Antibiotic prophylaxis in orthopaedic surgery: difficult decisions in an era of evolving antibiotic resistance","volume":"98-B(8):1014-1019","author":"Bryson","year":"2016","journal-title":"The Bone & Joint Journal."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0015","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1012219","article-title":"Effects of climate change on fungal infections","volume":"20","author":"Williams","year":"2024","journal-title":"PLoS Pathog."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb0020","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1007\/s11908-019-0702-9","article-title":"Antifungal Resistance: a Concerning Trend for the Present and Future","volume":"21","author":"Hendrickson","year":"2019","journal-title":"Curr. Infect. Dis. Rep."},{"key":"10.1016\/j.addr.2025.115740_bb0025","series-title":"Development and Public Health Action","author":"WHO Fungal Priority Pathogens List to Guide Research","year":"2022"},{"key":"10.1016\/j.addr.2025.115740_bb0030","first-page":"10","article-title":"Microbiome engineering: engineered live biotherapeutic products for treating human disease. Front Bioeng","author":"Rutter","year":"2022","journal-title":"Biotechnol"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0035","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1038\/nrmicro.2017.107","article-title":"Development and regulation of single- and multi-species Candida albicans biofilms","volume":"16","author":"Lohse","year":"2018","journal-title":"Nat. Rev. Microbiol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0040","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1038\/s41551-017-0181-y","article-title":"Engineered commensal microbes for diet-mediated colorectal-cancer chemoprevention","volume":"2","author":"Ho","year":"2018","journal-title":"Nat Biomed Eng."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0045","doi-asserted-by":"crossref","first-page":"434","DOI":"10.1021\/acssynbio.8b00457","article-title":"A synthetic system that senses Candida albicans and inhibits virulence factors","volume":"8","author":"Tscherner","year":"2019","journal-title":"ACS Synth. Biol."},{"key":"10.1016\/j.addr.2025.115740_bb0050","doi-asserted-by":"crossref","DOI":"10.1016\/j.biotechadv.2024.108336","article-title":"Next generation probiotics: Engineering live biotherapeutics","volume":"72","author":"Murali","year":"2024","journal-title":"Biotechnol. Adv."},{"key":"10.1016\/j.addr.2025.115740_bb0055","article-title":"Mechanisms of Drug-Induced Tolerance in Mycobacterium tuberculosis","volume":"34(1):10.1128\/cmr.00141-20","author":"Goossens","year":"2020","journal-title":"Clin. Microbiol. Rev."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0060","article-title":"Diversity of bet-hedging strategies in microbial communities-Recent cases and insights","volume":"14","author":"Morawska","year":"2022","journal-title":"WIREs Mech Dis."},{"issue":"7602","key":"10.1016\/j.addr.2025.115740_bb0065","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1038\/nature17626","article-title":"The evolution of cooperation within the gut microbiota","volume":"533","author":"Rakoff-Nahoum","year":"2016","journal-title":"Nature"},{"issue":"7437","key":"10.1016\/j.addr.2025.115740_bb0070","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1038\/nature11913","article-title":"Stabilization of cooperative virulence by the expression of an avirulent phenotype","volume":"494","author":"Diard","year":"2013","journal-title":"Nature"},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb0075","doi-asserted-by":"crossref","first-page":"3311","DOI":"10.1073\/pnas.1525329113","article-title":"Conserved rates and patterns of transcription errors across bacterial growth states and lifestyles","volume":"113","author":"Traverse","year":"2016","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"19","key":"10.1016\/j.addr.2025.115740_bb0080","doi-asserted-by":"crossref","first-page":"9733","DOI":"10.1128\/JVI.00694-10","article-title":"Viral Mutation Rates","volume":"84","author":"Sanju\u00e1n","year":"2010","journal-title":"J. Virol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0085","doi-asserted-by":"crossref","first-page":"745","DOI":"10.1016\/j.molcel.2016.05.003","article-title":"DNA Replication\u2014A Matter of Fidelity","volume":"62","author":"Ganai","year":"2016","journal-title":"Mol. Cell"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb0090","doi-asserted-by":"crossref","first-page":"1882","DOI":"10.3390\/v13091882","article-title":"Mutation Rates, Mutation Frequencies, and Proofreading-Repair Activities in RNA Virus Genetics","volume":"13","author":"Domingo","year":"2021","journal-title":"Viruses"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0095","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1038\/nrmicro3003","article-title":"The role of mutational robustness in RNA virus evolution","volume":"11","author":"Lauring","year":"2013","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb0100","doi-asserted-by":"crossref","DOI":"10.1016\/j.dnarep.2022.103389","article-title":"Review of DNA repair enzymes in bacteria: With a major focus on AddAB and RecBCD","volume":"118","author":"Wang","year":"2022","journal-title":"DNA Repair."},{"key":"10.1016\/j.addr.2025.115740_bb0105","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1016\/B978-0-12-809633-8.20958-8","article-title":"Genetic diversity and evolution of viral populations","author":"Sanju\u00e1n","year":"2021","journal-title":"Encyclopedia of Virology. Published online"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0110","doi-asserted-by":"crossref","first-page":"354","DOI":"10.1186\/s12870-024-04950-8","article-title":"Aspergillus flavus pangenome (AflaPan) uncovers novel aflatoxin and secondary metabolite associated gene clusters","volume":"24","author":"Gangurde","year":"2024","journal-title":"BMC Plant Biol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0115","doi-asserted-by":"crossref","first-page":"226","DOI":"10.1186\/s12915-022-01412-1","article-title":"Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata","volume":"20","author":"Marcet-Houben","year":"2022","journal-title":"BMC Biol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0120","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1016\/j.ijantimicag.2009.05.013","article-title":"Detection of point mutations associated with antibiotic resistance in Pseudomonas aeruginosa","volume":"34","author":"Gorgani","year":"2009","journal-title":"Int. J. Antimicrob. Agents"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0125","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1016\/j.ijantimicag.2006.08.017","article-title":"Multi-azole resistance in Aspergillus fumigatus","volume":"28","author":"Howard","year":"2006","journal-title":"Int. J. Antimicrob. Agents"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0130","doi-asserted-by":"crossref","first-page":"1120","DOI":"10.1128\/AAC.47.3.1120-1124.2003","article-title":"A point mutation in the 14alpha-sterol demethylase gene cyp51A contributes to itraconazole resistance in Aspergillus fumigatus","volume":"47","author":"Diaz-Guerra","year":"2003","journal-title":"Antimicrob. Agents Chemother."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0135","doi-asserted-by":"crossref","first-page":"2747","DOI":"10.1128\/AAC.48.7.2747-2750.2004","article-title":"Substitutions at Methionine 220 in the 14\u03b1-Sterol Demethylase (Cyp51A) of Aspergillus fumigatus Are Responsible for Resistance In Vitro to Azole Antifungal Drugs","volume":"48","author":"Mellado","year":"2004","journal-title":"Antimicrob. Agents Chemother."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0140","doi-asserted-by":"crossref","first-page":"1897","DOI":"10.1128\/AAC.01092-06","article-title":"A New Aspergillus fumigatus Resistance Mechanism Conferring In Vitro Cross-Resistance to Azole Antifungals Involves a Combination of cyp51A Alterations","volume":"51","author":"Mellado","year":"2007","journal-title":"Antimicrob. Agents Chemother."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0145","doi-asserted-by":"crossref","first-page":"551","DOI":"10.1038\/nrg2593","article-title":"Mechanisms of change in gene copy number","volume":"10","author":"Hastings","year":"2009","journal-title":"Nat. Rev. Genet."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0150","doi-asserted-by":"crossref","first-page":"3981","DOI":"10.1038\/s41467-024-48233-0","article-title":"Three concurrent mechanisms generate gene copy number variation and transient antibiotic heteroresistance","volume":"15","author":"Nicoloff","year":"2024","journal-title":"Nat. Commun."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0155","doi-asserted-by":"crossref","first-page":"2517","DOI":"10.1038\/s41467-020-16399-y","article-title":"Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities","volume":"11","author":"Nichols","year":"2020","journal-title":"Nat. Commun."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0160","doi-asserted-by":"crossref","first-page":"473","DOI":"10.1146\/annurev.mi.31.100177.002353","article-title":"Tandem genetic duplications in phage and bacteria","volume":"31","author":"Anderson","year":"1977","journal-title":"Ann. Rev. Microbiol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0165","doi-asserted-by":"crossref","first-page":"1768","DOI":"10.1093\/molbev\/msz104","article-title":"Aneuploidy Enables Cross-Adaptation to Unrelated Drugs","volume":"36","author":"Yang","year":"2019","journal-title":"Mol. Biol. Evol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0170","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s44259-024-00072-1","article-title":"The role of gene copy number variation in antimicrobial resistance in human fungal pathogens","volume":"3","author":"Jay","year":"2025","journal-title":"npj Antimicrob Resist."},{"key":"10.1016\/j.addr.2025.115740_bb0175","doi-asserted-by":"crossref","first-page":"2350","DOI":"10.12688\/f1000research.9218.1","article-title":"Plasticity of the Leishmania genome leading to gene copy number variations and drug resistance","volume":"5","author":"Laffitte","year":"2016","journal-title":"F1000Res"},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb0180","doi-asserted-by":"crossref","first-page":"2229","DOI":"10.1128\/AAC.41.10.2229","article-title":"Molecular biological characterization of an azole-resistant Candida glabrata isolate","volume":"41","author":"Marichal","year":"1997","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0185","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1000848","article-title":"Cryptococcus neoformans Overcomes Stress of Azole Drugs by Formation of Disomy in Specific Multiple Chromosomes","volume":"6","author":"Sionov","year":"2010","journal-title":"PLoS Pathog."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0190","doi-asserted-by":"crossref","first-page":"950","DOI":"10.1128\/JB.188.3.950-957.2006","article-title":"Two DNA Invertases Contribute to Flagellar Phase Variation in Salmonella enterica Serovar Typhimurium Strain LT2","volume":"188","author":"Kutsukake","year":"2006","journal-title":"J. Bacteriol."},{"issue":"17","key":"10.1016\/j.addr.2025.115740_bb0195","doi-asserted-by":"crossref","first-page":"5724","DOI":"10.1073\/pnas.82.17.5724","article-title":"An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli","volume":"82","author":"Abraham","year":"1985","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb0200","doi-asserted-by":"crossref","first-page":"1719","DOI":"10.1101\/gr.130000","article-title":"Horizontal Gene Transfer in Bacterial and Archaeal Complete Genomes","volume":"10","author":"Garcia-Vallv\u00e9","year":"2000","journal-title":"Genome Res."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0205","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1038\/s41579-021-00650-4","article-title":"Horizontal gene transfer and adaptive evolution in bacteria","volume":"20","author":"Arnold","year":"2022","journal-title":"Nat. Rev. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0210","doi-asserted-by":"crossref","first-page":"590","DOI":"10.1016\/j.cell.2011.01.015","article-title":"Intercellular Nanotubes Mediate Bacterial Communication","volume":"144","author":"Dubey","year":"2011","journal-title":"Cell"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0215","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1002222","article-title":"The Repertoire of ICE in Prokaryotes Underscores the Unity, Diversity, and Ubiquity of Conjugation","volume":"7","author":"Guglielmini","year":"2011","journal-title":"PLoS Genet."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0220","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1038\/nrmicro3199","article-title":"Bacterial transformation: distribution, shared mechanisms and divergent control","volume":"12","author":"Johnston","year":"2014","journal-title":"Nat. Rev. Microbiol."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb0225","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0001055","article-title":"Horizontal Gene Transfer Regulation in Bacteria as a \u201cSpandrel\u201d of DNA Repair Mechanisms","volume":"2","author":"Fall","year":"2007","journal-title":"PLoS One"},{"issue":"5933","key":"10.1016\/j.addr.2025.115740_bb0230","doi-asserted-by":"crossref","first-page":"1454","DOI":"10.1126\/science.1171908","article-title":"Hyper-Recombination, Diversity, and Antibiotic Resistance in Pneumococcus","volume":"324","author":"Hanage","year":"2009","journal-title":"Science"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0235","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1016\/j.tig.2009.11.007","article-title":"Acquisition of prokaryotic genes by fungal genomes","volume":"26","author":"Marcet-Houben","year":"2010","journal-title":"Trends Genet."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0240","doi-asserted-by":"crossref","first-page":"807","DOI":"10.1016\/j.cub.2017.02.003","article-title":"Lateral Gene Transfer in the Adaptation of the Anaerobic Parasite Blastocystis to the Gut","volume":"27","author":"Eme","year":"2017","journal-title":"Curr. Biol."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb0245","doi-asserted-by":"crossref","first-page":"R88","DOI":"10.1186\/gb-2004-5-11-r88","article-title":"Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum","volume":"5","author":"Huang","year":"2004","journal-title":"Genome Biol."},{"issue":"7028","key":"10.1016\/j.addr.2025.115740_bb0250","doi-asserted-by":"crossref","first-page":"865","DOI":"10.1038\/nature03291","article-title":"The genome of the protist parasite Entamoeba histolytica","volume":"433","author":"Loftus","year":"2005","journal-title":"Nature"},{"issue":"15","key":"10.1016\/j.addr.2025.115740_bb0255","doi-asserted-by":"crossref","first-page":"4116","DOI":"10.1073\/pnas.1517242113","article-title":"Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides","volume":"113","author":"Alexander","year":"2016","journal-title":"Proc. Natl. Acad. Sci."},{"key":"10.1016\/j.addr.2025.115740_bb0260","series-title":"Fungal Associations","article-title":"Horizontal Gene Transfer in Fungi and Its Ecological Importance","author":"Gon\u00e7alves","year":"2024"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0265","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1016\/j.fbr.2016.08.002","article-title":"Vegetative incompatibility in fungi: From recognition to cell death, whatever does the trick","volume":"30","author":"Paoletti","year":"2016","journal-title":"Fungal Biology Reviews."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb0270","doi-asserted-by":"crossref","first-page":"3085","DOI":"10.1099\/vir.0.025411-0","article-title":"Mycoviruses related to chrysovirus affect vegetative growth in the rice blast fungus Magnaporthe oryzae","volume":"91","author":"Urayama","year":"2010","journal-title":"J. Gen. Virol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0275","doi-asserted-by":"crossref","first-page":"1452","DOI":"10.1073\/pnas.1213755110","article-title":"Extracellular transmission of a DNA mycovirus and its use as a natural fungicide","volume":"110","author":"Yu","year":"2013","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0280","doi-asserted-by":"crossref","first-page":"1908","DOI":"10.1038\/s41598-017-02017-3","article-title":"Mycoviruses of an endophytic fungus can replicate in plant cells: evolutionary implications","volume":"7","author":"Nerva","year":"2017","journal-title":"Sci. Rep."},{"issue":"45","key":"10.1016\/j.addr.2025.115740_bb0285","doi-asserted-by":"crossref","first-page":"12803","DOI":"10.1073\/pnas.1608013113","article-title":"Fungal DNA virus infects a mycophagous insect and utilizes it as a transmission vector","volume":"113","author":"Liu","year":"2016","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb0290","doi-asserted-by":"crossref","first-page":"1060","DOI":"10.1016\/j.tig.2024.08.006","article-title":"Starships: a new frontier for fungal biology","volume":"40","author":"Urquhart","year":"2024","journal-title":"Trends Genet."},{"issue":"0","key":"10.1016\/j.addr.2025.115740_bb0295","first-page":"e01092","article-title":"Giant transposons promote strain heterogeneity in a major fungal pathogen","volume":"0","author":"Gluck-Thaler","year":"2025","journal-title":"mBio"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0300","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1146\/annurev.py.32.090194.003053","article-title":"Biological control of chestnut blight in Europe","volume":"32","author":"Heiniger","year":"1994","journal-title":"Annu. Rev. Phytopathol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0305","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1003421","article-title":"Influenza Virus Reassortment Occurs with High Frequency in the Absence of Segment Mismatch","volume":"9","author":"Marshall","year":"2013","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.addr.2025.115740_bb0310","article-title":"The differential virulence of Fusarium strains causing corneal infections and plant diseases is associated with accessory chromosome composition","author":"Ayhan","year":"2024","journal-title":"bioRxiv"},{"key":"10.1016\/j.addr.2025.115740_bb0315","first-page":"1","article-title":"Horizontal transfer of accessory chromosomes in fungi \u2013 a regulated process for exchange of genetic material?","volume":"10","author":"Habig","year":"2025","journal-title":"Heredity. Published online February"},{"key":"10.1016\/j.addr.2025.115740_bb0320","first-page":"11","article-title":"Parasexuality of Candida Species","author":"Mishra","year":"2021","journal-title":"Front. Cell. Infect. Microbiol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0325","doi-asserted-by":"crossref","first-page":"567","DOI":"10.1534\/genetics.118.300996","article-title":"A High-Resolution Map of Meiotic Recombination in Cryptococcus deneoformans Demonstrates Decreased Recombination in Unisexual Reproduction","volume":"209","author":"Roth","year":"2018","journal-title":"Genetics"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0330","doi-asserted-by":"crossref","first-page":"4388","DOI":"10.1038\/s41467-019-12376-2","article-title":"A \u2018parameiosis\u2019 drives depolyploidization and homologous recombination in Candida albicans","volume":"10","author":"Anderson","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.addr.2025.115740_bb0335","doi-asserted-by":"crossref","DOI":"10.1016\/j.meegid.2021.104731","article-title":"Cryptococcus neoformans: Sex, morphogenesis, and virulence","volume":"89","author":"Zhao","year":"2021","journal-title":"Infect. Genet. Evol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0340","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1006\/jtbi.1993.1104","article-title":"Alternatives to Meiosis: The Unusual Genetics of Red Algae, Microsporidia, and Others","volume":"163","author":"Haig","year":"1993","journal-title":"J. Theor. Biol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0345","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1016\/0169-4758(87)90147-5","article-title":"Spread of chloroquine resistance in Plasmodium falciparum","volume":"3","author":"Payne","year":"1987","journal-title":"Parasitol. Today"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0350","doi-asserted-by":"crossref","first-page":"6919","DOI":"10.1038\/s41467-023-42679-4","article-title":"Origin of fungal hybrids with pathogenic potential from warm seawater environments","volume":"14","author":"del Olmo","year":"2023","journal-title":"Nat. Commun."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0355","doi-asserted-by":"crossref","first-page":"809","DOI":"10.3390\/antibiotics11060809","article-title":"Epigenetic-Mediated Antimicrobial Resistance: Host versus Pathogen Epigenetic Alterations","volume":"11","author":"Muhammad","year":"2022","journal-title":"Antibiotics"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0360","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.ijmm.2006.10.002","article-title":"DNA adenine methylation and bacterial pathogenesis","volume":"297","author":"Heusipp","year":"2007","journal-title":"International Journal of Medical Microbiology."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0365","doi-asserted-by":"crossref","first-page":"42823","DOI":"10.1038\/srep42823","article-title":"Mechanistic Investigation on ROS Resistance of Phosphorothioated DNA","volume":"7","author":"Wu","year":"2017","journal-title":"Sci. Rep."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0370","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1186\/1471-2148-8-52","article-title":"Epigenetic inheritance based evolution of antibiotic resistance in bacteria","volume":"8","author":"Adam","year":"2008","journal-title":"BMC Evol. Biol."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0375","doi-asserted-by":"crossref","first-page":"4219","DOI":"10.1128\/AAC.00004-14","article-title":"Phasevarions Mediate Epigenetic Regulation of Antimicrobial Susceptibility in Neisseria meningitidis","volume":"58","author":"Jen","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0380","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1000400","article-title":"Phasevarions Mediate Random Switching of Gene Expression in Pathogenic Neisseria","volume":"5","author":"Srikhanta","year":"2009","journal-title":"PLoS Pathog."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0385","doi-asserted-by":"crossref","first-page":"398","DOI":"10.1023\/B:ABIM.0000033918.72836.2e","article-title":"Effect of 5-Azacytidine on the Light-Sensitive Formation of Sexual and Asexual Reproductive Structures in wc-1 and wc-2 Mutants of Neurospora crassa","volume":"40","author":"Filippovich","year":"2004","journal-title":"Appl. Biochem. Microbiol."},{"issue":"29","key":"10.1016\/j.addr.2025.115740_bb0390","doi-asserted-by":"crossref","first-page":"11965","DOI":"10.1073\/pnas.1109631108","article-title":"DNA methylation regulates phenotype-dependent transcriptional activity in Candida albicans","volume":"108","author":"Mishra","year":"2011","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0395","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1038\/s41467-023-44491-6","article-title":"Temporally-coordinated bivalent histone modifications of BCG1 enable fungal invasion and immune evasion","volume":"15","author":"Zhao","year":"2024","journal-title":"Nat. Commun."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0400","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3000331","article-title":"A natural histone H2A variant lacking the Bub1 phosphorylation site and regulated depletion of centromeric histone CENP-A foster evolvability in Candida albicans","volume":"17","author":"Brimacombe","year":"2019","journal-title":"PLoS Biol."},{"key":"10.1016\/j.addr.2025.115740_bb0405","article-title":"Conversion of Commensal Escherichia coli K-12 to an Invasive Form via Expression of a Mutant Histone-Like Protein","volume":"2(5):10.1128\/mbio.00182-11","author":"Koli","year":"2011","journal-title":"mBio"},{"key":"10.1016\/j.addr.2025.115740_bb0410","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.plasmid.2014.06.004","article-title":"H-NS-like nucleoid-associated proteins, mobile genetic elements and horizontal gene transfer in bacteria","volume":"75","author":"Dorman","year":"2014","journal-title":"Plasmid"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0415","doi-asserted-by":"crossref","first-page":"e03509","DOI":"10.1128\/spectrum.03509-22","article-title":"The DNA Phosphorothioation Restriction-Modification System Influences the Antimicrobial Resistance of Pathogenic Bacteria","volume":"11","author":"Xu","year":"2023","journal-title":"Microbiology Spectrum."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0420","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1038\/s41559-019-0810-9","article-title":"Diversity of cytosine methylation across the fungal tree of life","volume":"3","author":"Bewick","year":"2019","journal-title":"Nat. Ecol. Evol."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0425","doi-asserted-by":"crossref","first-page":"2500","DOI":"10.1128\/AAC.00131-06","article-title":"The Cfr rRNA Methyltransferase Confers Resistance to Phenicols, Lincosamides, Oxazolidinones, Pleuromutilins, and Streptogramin A Antibiotics","volume":"50","author":"Long","year":"2006","journal-title":"Antimicrob. Agents Chemother."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0430","doi-asserted-by":"crossref","first-page":"e00419","DOI":"10.1128\/msystems.00419-22","article-title":"Systematic Identification of CpxRA-Regulated Genes and Their Roles in Escherichia coli Stress Response","volume":"7","author":"Zhao","year":"2022","journal-title":"mSystems"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0435","doi-asserted-by":"crossref","DOI":"10.1016\/j.jbc.2022.102208","article-title":"Identification of allosteric hotspots regulating the ribosomal RNA binding by antibiotic resistance-conferring Erm methyltransferases","volume":"298","author":"Bhujbalrao","year":"2022","journal-title":"J. Biol. Chem."},{"issue":"25","key":"10.1016\/j.addr.2025.115740_bb0440","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2304128120","article-title":"30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC","volume":"120","author":"Srinivas","year":"2023","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0445","doi-asserted-by":"crossref","first-page":"4298","DOI":"10.1038\/s41467-019-12323-1","article-title":"A fungal pathogen deploys a small silencing RNA that attenuates mosquito immunity and facilitates infection","volume":"10","author":"Cui","year":"2019","journal-title":"Nat. Commun."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0450","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1007957","article-title":"Broad antifungal resistance mediated by RNAi-dependent epimutation in the basal human fungal pathogen Mucor circinelloides","volume":"15","author":"Chang","year":"2019","journal-title":"PLoS Genet."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0455","doi-asserted-by":"crossref","first-page":"1239","DOI":"10.1038\/s41564-022-01183-z","article-title":"Uncontrolled transposition following RNAi loss causes hypermutation and antifungal drug resistance in clinical isolates of Cryptococcus neoformans","volume":"7","author":"Priest","year":"2022","journal-title":"Nat. Microbiol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0460","doi-asserted-by":"crossref","first-page":"e00087","DOI":"10.1128\/msphere.00087-22","article-title":"Evolutionary Significance of Fungal Hypermutators: Lessons Learned from Clinical Strains and Implications for Fungal Plant Pathogens","volume":"7","author":"Gambhir","year":"2022","journal-title":"mSphere"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0465","doi-asserted-by":"crossref","first-page":"1740","DOI":"10.1093\/nar\/gku1404","article-title":"Protein mistranslation protects bacteria against oxidative stress","volume":"43","author":"Fan","year":"2015","journal-title":"Nucleic Acids Res."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0470","doi-asserted-by":"crossref","first-page":"937","DOI":"10.1046\/j.1365-2958.1999.01233.x","article-title":"Selective advantages created by codon ambiguity allowed for the evolution of an alternative genetic code in Candida spp","volume":"31","author":"Santos","year":"1999","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb0475","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1016\/j.mib.2015.05.007","article-title":"Posttranslational regulation of microbial metabolism","volume":"27","author":"Kochanowski","year":"2015","journal-title":"Curr. Opin. Microbiol."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb0480","doi-asserted-by":"crossref","first-page":"5008","DOI":"10.1073\/pnas.92.11.5008","article-title":"A mechanism for posttranslational modifications of proteins by yeast protein farnesyltransferase","volume":"92","author":"Dolence","year":"1995","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"3894","key":"10.1016\/j.addr.2025.115740_bb0485","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1126\/science.165.3894.657","article-title":"Enzyme Synthesis in Synchronous Cultures","volume":"165","author":"Mitchison","year":"1969","journal-title":"Science"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0490","doi-asserted-by":"crossref","first-page":"1708","DOI":"10.1093\/nar\/gkr768","article-title":"The Caulobacter crescentus DNA-(adenine-N6)-methyltransferase CcrM methylates DNA in a distributive manner","volume":"40","author":"Albu","year":"2012","journal-title":"Nucleic Acids Res."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0495","doi-asserted-by":"crossref","first-page":"487","DOI":"10.15252\/embj.201695050","article-title":"Translational control of lipogenic enzymes in the cell cycle of synchronous, growing yeast cells","volume":"36","author":"Blank","year":"2017","journal-title":"EMBO J."},{"key":"10.1016\/j.addr.2025.115740_bb0500","series-title":"Advances in Applied Microbiology","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/S0065-2164(01)49011-3","article-title":"Metal toxicity in yeasts and the role of oxidative stress","volume":"49","author":"Avery","year":"2001"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb0505","doi-asserted-by":"crossref","first-page":"1058","DOI":"10.1101\/gad.8.9.1058","article-title":"G1 cyclins CLN1 and CLN2 repress the mating factor response pathway at Start in the yeast cell cycle","volume":"8","author":"Oehlen","year":"1994","journal-title":"Genes Dev."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0510","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.0030045","article-title":"Aging and Death in an Organism That Reproduces by Morphologically Symmetric Division","volume":"3","author":"Stewart","year":"2005","journal-title":"PLoS Biol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0515","doi-asserted-by":"crossref","first-page":"612","DOI":"10.1016\/j.mib.2006.10.010","article-title":"Conditional and replicative senescence in Escherichia coli","volume":"9","author":"Fredriksson","year":"2006","journal-title":"Curr. Opin. Microbiol."},{"issue":"7205","key":"10.1016\/j.addr.2025.115740_bb0520","doi-asserted-by":"crossref","first-page":"728","DOI":"10.1038\/nature07212","article-title":"A mechanism for asymmetric segregation of age during yeast budding","volume":"454","author":"Shcheprova","year":"2008","journal-title":"Nature"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0525","doi-asserted-by":"crossref","first-page":"602","DOI":"10.1111\/acel.12582","article-title":"Aging yeast gain a competitive advantage on non-optimal carbon sources","volume":"16","author":"Frenk","year":"2017","journal-title":"Aging Cell"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0530","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1099\/00221287-132-5-1297","article-title":"The Rate of Killing of Escherichia coli by\u03b2-Lactam Antibiotics Is Strictly Proportional to the Rate of Bacterial Growth","volume":"132","author":"Tuomanen","year":"1986","journal-title":"Microbiology"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0535","doi-asserted-by":"crossref","first-page":"627","DOI":"10.1128\/AAC.49.2.627-631.2005","article-title":"Bactericidal Action of Gatifloxacin, Rifampin, and Isoniazid on Logarithmic- and Stationary-Phase Cultures of Mycobacterium tuberculosis","volume":"49","author":"Paramasivan","year":"2005","journal-title":"Antimicrob. Agents Chemother."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0540","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1007\/s10541-005-0111-6","article-title":"Persister cells and the riddle of biofilm survival","volume":"70","author":"Lewis","year":"2005","journal-title":"Biochem. Mosc."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0545","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1016\/j.femsle.2004.11.049","article-title":"Transposon mutagenesis identifies genes which control antimicrobial drug tolerance in stationary-phase Escherichia coli","volume":"243","author":"Hu","year":"2005","journal-title":"FEMS Microbiol. Lett."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb0550","doi-asserted-by":"crossref","first-page":"5127","DOI":"10.1128\/AAC.00694-13","article-title":"Azole Heteroresistance in Cryptococcus neoformans: Emergence of Resistant Clones with Chromosomal Disomy in the Mouse Brain during Fluconazole Treatment","volume":"57","author":"Sionov","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.addr.2025.115740_bb0555","article-title":"Heteroresistance to Fluconazole Is a Continuously Distributed Phenotype among Candida glabrata Clinical Strains Associated with In Vivo Persistence","volume":"7(4):10.1128\/mbio.00655-16","author":"Ben-Ami","year":"2016","journal-title":"mBio"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb0560","doi-asserted-by":"crossref","first-page":"3163","DOI":"10.1038\/s41591-024-03183-4","article-title":"Antifungal heteroresistance causes prophylaxis failure and facilitates breakthrough Candida parapsilosis infections","volume":"30","author":"Zhai","year":"2024","journal-title":"Nat. Med."},{"key":"10.1016\/j.addr.2025.115740_bb0565","doi-asserted-by":"crossref","DOI":"10.15585\/mmwr.mm6901a2","article-title":"Candida auris Isolates Resistant to Three Classes of Antifungal Medications \u2014 New York, 2019","volume":"69","author":"Ostrowsky","year":"2020","journal-title":"MMWR Morb. Mortal Wkly. Rep."},{"key":"10.1016\/j.addr.2025.115740_bb0570","article-title":"Polygenetic Determinants of Azole Resistance, Tolerance, and Heteroresistance in Candida albicans","volume":"29","author":"Schutz","year":"2025","journal-title":"bioRxiv. Preprint posted online June"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0575","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1038\/nrmicro.2017.42","article-title":"Persistent bacterial infections and persister cells","volume":"15","author":"Fisher","year":"2017","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb0580","article-title":"The Pathway To Establishing HIV Latency Is Critical to How Latency Is Maintained and Reversed","volume":"92(13):10.1128\/jvi.02225-17","author":"Rezaei","year":"2018","journal-title":"J. Virol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0585","doi-asserted-by":"crossref","first-page":"1167","DOI":"10.1038\/s41467-018-03569-2","article-title":"A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61","volume":"9","author":"Depledge","year":"2018","journal-title":"Nat. Commun."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0590","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1016\/j.pt.2023.11.007","article-title":"Plasmodium falciparum ring-stage plasticity and drug resistance","volume":"40","author":"Platon","year":"2024","journal-title":"Trends Parasitol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0595","doi-asserted-by":"crossref","first-page":"E801","DOI":"10.1073\/pnas.1619265114","article-title":"Continual renewal and replication of persistent Leishmania major parasites in concomitantly immune hosts","volume":"114","author":"Mandell","year":"2017","journal-title":"Proc. Natl. Acad. Sci."},{"key":"10.1016\/j.addr.2025.115740_bb0600","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.34039","article-title":"Spontaneous dormancy protects Trypanosoma cruzi during extended drug exposure. Soldati-Favre D, ed","volume":"7","author":"S\u00e1nchez-Vald\u00e9z","year":"2018","journal-title":"eLife"},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0605","doi-asserted-by":"crossref","first-page":"981","DOI":"10.1111\/j.1462-2920.2005.00777.x","article-title":"Persister cells, the biofilm matrix and tolerance to metal cations in biofilm and planktonic Pseudomonas aeruginosa","volume":"7","author":"Harrison","year":"2005","journal-title":"Environ. Microbiol."},{"issue":"24","key":"10.1016\/j.addr.2025.115740_bb0610","doi-asserted-by":"crossref","first-page":"8172","DOI":"10.1128\/JB.186.24.8172-8180.2004","article-title":"Specialized Persister Cells and the Mechanism of Multidrug Tolerance in Escherichia coli","volume":"186","author":"Keren","year":"2004","journal-title":"J. Bacteriol."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0615","doi-asserted-by":"crossref","first-page":"2804","DOI":"10.1128\/AAC.00295-09","article-title":"Heteroresistance to Fluconazole in Cryptococcus neoformans Is Intrinsic and Associated with Virulence","volume":"53","author":"Sionov","year":"2009","journal-title":"Antimicrob. Agents Chemother."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0620","doi-asserted-by":"crossref","first-page":"1261","DOI":"10.1046\/j.1365-2672.2003.02079.x","article-title":"Clonal variation in maximum specific growth rate and susceptibility towards antimicrobials","volume":"95","author":"Sufya","year":"2003","journal-title":"J. Appl. Microbiol."},{"issue":"5568","key":"10.1016\/j.addr.2025.115740_bb0625","doi-asserted-by":"crossref","first-page":"467","DOI":"10.1038\/262467a0","article-title":"Non-genetic individuality: chance in the single cell","volume":"262","author":"Spudich","year":"1976","journal-title":"Nature"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0630","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1016\/S0006-3495(98)77777-X","article-title":"Origins of Individual Swimming Behavior in Bacteria","volume":"74","author":"Levin","year":"1998","journal-title":"Biophys. J."},{"issue":"24","key":"10.1016\/j.addr.2025.115740_bb0635","doi-asserted-by":"crossref","first-page":"3083","DOI":"10.1101\/gad.1373905","article-title":"Cell population heterogeneity during growth of Bacillus subtilis","volume":"19","author":"Kearns","year":"2005","journal-title":"Genes Dev."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0640","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.1001928","article-title":"Bistable Expression of Virulence Genes in Salmonella Leads to the Formation of an Antibiotic-Tolerant Subpopulation","volume":"12","author":"Arnoldini","year":"2014","journal-title":"PLoS Biol."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb0645","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1016\/j.pt.2005.08.016","article-title":"Regulation of antigen gene expression in Trypanosoma brucei","volume":"21","author":"Pays","year":"2005","journal-title":"Trends Parasitol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0650","doi-asserted-by":"crossref","first-page":"925","DOI":"10.1101\/gr.129692.111","article-title":"Transcriptional variation in the malaria parasite Plasmodium falciparum","volume":"22","author":"Rovira-Graells","year":"2012","journal-title":"Genome Res."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0655","doi-asserted-by":"crossref","first-page":"314","DOI":"10.1016\/j.mib.2007.04.002","article-title":"Dimorphism and virulence in fungi","volume":"10","author":"Klein","year":"2007","journal-title":"Curr. Opin. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0660","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1016\/j.mib.2013.03.006","article-title":"Titan cells in Cryptococcus neoformans: cells with a giant impact","volume":"16","author":"Zaragoza","year":"2013","journal-title":"Curr. Opin. Microbiol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0665","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1093\/mmy\/myv012","article-title":"Morphology and its underlying genetic regulation impact the interaction between Cryptococcus neoformans and its hosts","volume":"53","author":"Lin","year":"2015","journal-title":"Med. Mycol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0670","doi-asserted-by":"crossref","first-page":"1155","DOI":"10.1128\/EC.00147-13","article-title":"Unisexual Reproduction Enhances Fungal Competitiveness by Promoting Habitat Exploration via Hyphal Growth and Sporulation","volume":"12","author":"Phadke","year":"2013","journal-title":"Eukaryot. Cell"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0675","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004185","article-title":"Morphotype Transition and Sexual Reproduction Are Genetically Associated in a Ubiquitous Environmental Pathogen","volume":"10","author":"Wang","year":"2014","journal-title":"PLoS Pathog."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0680","doi-asserted-by":"crossref","first-page":"702","DOI":"10.1111\/j.1365-2958.2004.04295.x","article-title":"Metabolic differentiation in actively swarming Salmonella","volume":"54","author":"Kim","year":"2004","journal-title":"Mol. Microbiol."},{"issue":"7562","key":"10.1016\/j.addr.2025.115740_bb0685","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1038\/nature14660","article-title":"Metabolic co-dependence gives rise to collective oscillations within biofilms","volume":"523","author":"Liu","year":"2015","journal-title":"Nature"},{"issue":"6338","key":"10.1016\/j.addr.2025.115740_bb0690","doi-asserted-by":"crossref","first-page":"638","DOI":"10.1126\/science.aah4204","article-title":"Coupling between distant biofilms and emergence of nutrient time-sharing","volume":"356","author":"Liu","year":"2017","journal-title":"Science"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0695","volume":"8","author":"Fanning","year":"2012","journal-title":"Fungal Biofilms. PLOS Pathogens."},{"key":"10.1016\/j.addr.2025.115740_bb0700","first-page":"1","article-title":"Zur Untersuchung von Pathogenen Organismen","author":"Koch","year":"1881","journal-title":"Mitteilungen Aus Dem Kaiserlichen Gesundheitsamte."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0705","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1093\/genetics\/28.6.491","article-title":"Mutations of Bacteria from Virus Sensitivity to Virus Resistance","volume":"28","author":"Luria","year":"1943","journal-title":"Genetics"},{"issue":"6320","key":"10.1016\/j.addr.2025.115740_bb0710","doi-asserted-by":"crossref","first-page":"497","DOI":"10.1016\/S0140-6736(00)74210-3","article-title":"TREATMENT OF STAPHYLOCOCCAL INFECTIONS WITH PENICILLIN BY INTERMITTENT STERILISATION","volume":"244","author":"Bigger","year":"1944","journal-title":"Lancet"},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0715","doi-asserted-by":"crossref","first-page":"896","DOI":"10.1128\/EC.00103-12","article-title":"Divergent targets of Candida albicans biofilm regulator Bcr1 in vitro and in vivo","volume":"11","author":"Fanning","year":"2012","journal-title":"Eukaryot. Cell"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0720","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0093110","article-title":"Nutrient Transitions Are a Source of Persisters in Escherichia coli Biofilms","volume":"9","author":"Amato","year":"2014","journal-title":"PLoS One"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0725","doi-asserted-by":"crossref","first-page":"1837","DOI":"10.1038\/s41467-018-04221-9","article-title":"A comprehensive model for assessment of liver stage therapies targeting Plasmodium vivax and Plasmodium falciparum","volume":"9","author":"Roth","year":"2018","journal-title":"Nat. Commun."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0730","doi-asserted-by":"crossref","first-page":"526","DOI":"10.1016\/j.chom.2015.02.011","article-title":"Plasmodium vivax Liver Stage Development and Hypnozoite Persistence in Human Liver-Chimeric Mice","volume":"17","author":"Mikolajczak","year":"2015","journal-title":"Cell Host Microbe"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0735","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1093\/femsre\/fux001","article-title":"Formation, physiology, ecology, evolution and clinical importance of bacterial persisters","volume":"41","author":"Van den Bergh","year":"2017","journal-title":"FEMS Microbiol. Rev."},{"issue":"5690","key":"10.1016\/j.addr.2025.115740_bb0740","doi-asserted-by":"crossref","first-page":"1622","DOI":"10.1126\/science.1099390","article-title":"Bacterial Persistence as a Phenotypic Switch","volume":"305","author":"Balaban","year":"2004","journal-title":"Science"},{"issue":"Pt B","key":"10.1016\/j.addr.2025.115740_bb0745","doi-asserted-by":"crossref","first-page":"262","DOI":"10.1016\/j.mad.2016.03.009","article-title":"Microfluidic Technologies for Yeast Replicative Lifespan Studies","volume":"161","author":"Chen","year":"2017","journal-title":"Mech. Ageing Dev."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb0750","doi-asserted-by":"crossref","first-page":"1099","DOI":"10.1016\/j.cub.2010.04.045","article-title":"Robust growth of Escherichia coli","volume":"20","author":"Wang","year":"2010","journal-title":"Curr. Biol."},{"issue":"6976","key":"10.1016\/j.addr.2025.115740_bb0755","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1038\/nature02298","article-title":"Multistability in the lactose utilization network of Escherichia coli","volume":"427","author":"Ozbudak","year":"2004","journal-title":"Nature"},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0760","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1073\/pnas.43.7.553","article-title":"Enzyme induction as an all-or-none phenomenon*","volume":"43","author":"Novick","year":"1957","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0765","doi-asserted-by":"crossref","first-page":"216","DOI":"10.1016\/j.cell.2008.09.050","article-title":"Nature, nurture, or chance: stochastic gene expression and its consequences","volume":"135","author":"Raj","year":"2008","journal-title":"Cell"},{"key":"10.1016\/j.addr.2025.115740_bb0770","article-title":"Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution","volume":"373(6556):eabi4882","author":"Dar","year":"2021","journal-title":"Science"},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb0775","doi-asserted-by":"crossref","first-page":"3143","DOI":"10.1128\/AEM.00191-08","article-title":"Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-FISH) and NanoSIMS","volume":"74","author":"Behrens","year":"2008","journal-title":"Appl. Environ. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0780","doi-asserted-by":"crossref","first-page":"872","DOI":"10.1021\/jasms.0c00439","article-title":"Spatially Resolved Mass Spectrometry at the Single Cell: Recent Innovations in Proteomics and Metabolomics","volume":"32","author":"Taylor","year":"2021","journal-title":"J. Am. Soc. Mass Spectrom."},{"issue":"23","key":"10.1016\/j.addr.2025.115740_bb0785","doi-asserted-by":"crossref","first-page":"15171","DOI":"10.1021\/acs.analchem.9b03960","article-title":"Revealing the Metabolic Activity of Persisters in Mycobacteria by Single-Cell D2O Raman Imaging Spectroscopy","volume":"91","author":"Ueno","year":"2019","journal-title":"Anal. Chem."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb0790","doi-asserted-by":"crossref","first-page":"7729","DOI":"10.1021\/acs.analchem.9b01010","article-title":"Single-Cell and Time-Resolved Profiling of Intracellular Salmonella Metabolism in Primary Human Cells","volume":"91","author":"Xu","year":"2019","journal-title":"Anal. Chem."},{"issue":"29","key":"10.1016\/j.addr.2025.115740_bb0795","doi-asserted-by":"crossref","first-page":"11889","DOI":"10.1073\/pnas.0704662104","article-title":"Dissecting biological \u201cdark matter\u201d with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth","volume":"104","author":"Marcy","year":"2007","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0800","doi-asserted-by":"crossref","first-page":"202","DOI":"10.1186\/s40168-021-01152-4","article-title":"Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics","volume":"9","author":"Arikawa","year":"2021","journal-title":"Microbiome"},{"key":"10.1016\/j.addr.2025.115740_bb0805","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.955404","article-title":"Exploring strain diversity of dominant human skin bacterial species using single-cell genome sequencing","volume":"13","author":"Ide","year":"2022","journal-title":"Front. Microbiol."},{"issue":"15","key":"10.1016\/j.addr.2025.115740_bb0810","doi-asserted-by":"crossref","first-page":"2725","DOI":"10.1016\/j.cell.2022.06.040","article-title":"Single-cell approaches in human microbiome research","volume":"185","author":"Llor\u00e9ns-Rico","year":"2022","journal-title":"Cell"},{"key":"10.1016\/j.addr.2025.115740_bb0815","article-title":"High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome","volume":"376(6597):eabm1483","author":"Zheng","year":"2022","journal-title":"Science"},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb0820","doi-asserted-by":"crossref","first-page":"2210","DOI":"10.1128\/AEM.03588-15","article-title":"High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates","volume":"82","author":"Jiang","year":"2016","journal-title":"Appl. Environ. Microbiol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0825","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1016\/j.bpj.2018.06.008","article-title":"Recent Developments in Single-Cell RNA-Seq of Microorganisms","volume":"115","author":"Zhang","year":"2018","journal-title":"Biophys. J."},{"key":"10.1016\/j.addr.2025.115740_bb0830","first-page":"12","article-title":"Single-Cell RNA Sequencing Elucidates the Structure and Organization of Microbial Communities","author":"Brennan","year":"2021","journal-title":"Front. Microbiol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0835","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1038\/nmeth.4145","article-title":"Effective detection of variation in single-cell transcriptomes using MATQ-seq","volume":"14","author":"Sheng","year":"2017","journal-title":"Nat. Methods"},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb0840","doi-asserted-by":"crossref","first-page":"1192","DOI":"10.1038\/s41564-020-0729-6","article-title":"Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing","volume":"5","author":"Blattman","year":"2020","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb0845","doi-asserted-by":"crossref","DOI":"10.1126\/science.aba5257","article-title":"Microbial single-cell RNA sequencing by split-pool barcoding","author":"Kuchina","year":"2021","journal-title":"Science"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0850","doi-asserted-by":"crossref","first-page":"877","DOI":"10.1016\/j.cell.2023.01.002","article-title":"Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states","volume":"186","author":"Ma","year":"2023","journal-title":"Cell"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0855","doi-asserted-by":"crossref","first-page":"934","DOI":"10.1038\/s41564-023-01348-4","article-title":"Probe-based bacterial single-cell RNA sequencing predicts toxin regulation","volume":"8","author":"McNulty","year":"2023","journal-title":"Nat. Microbiol."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb0860","doi-asserted-by":"crossref","first-page":"2939","DOI":"10.1038\/s41596-024-01002-1","article-title":"ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets","volume":"19","author":"Samanta","year":"2024","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.addr.2025.115740_bb0865","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.55320","article-title":"A new protocol for single-cell RNA-seq reveals stochastic gene expression during lag phase in budding yeast. Rokas A, Barkai N, eds","volume":"9","author":"Jariani","year":"2020","journal-title":"eLife"},{"key":"10.1016\/j.addr.2025.115740_bb0870","doi-asserted-by":"crossref","first-page":"uqac020","DOI":"10.1093\/femsml\/uqac020","article-title":"Ushering in a new era of single-cell transcriptomics in bacteria","volume":"3","author":"Homberger","year":"2022","journal-title":"Microlife"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb0875","doi-asserted-by":"crossref","first-page":"1069","DOI":"10.1261\/rna.075945.120","article-title":"Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads","volume":"26","author":"Prezza","year":"2020","journal-title":"RNA"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0880","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1186\/s12864-020-07134-4","article-title":"Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion","volume":"21","author":"Wangsanuwat","year":"2020","journal-title":"BMC Genomics"},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb0885","doi-asserted-by":"crossref","first-page":"1202","DOI":"10.1038\/s41564-020-0774-1","article-title":"Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria","volume":"5","author":"Imdahl","year":"2020","journal-title":"Nat. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0890","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.FUNK-0052-2016","article-title":"Fungal Diversity Revisited: 2.2 to 3.8 Million Species","volume":"5","author":"Hawksworth","year":"2017","journal-title":"Microbiol Spectr."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0895","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1007\/s40588-024-00219-8","article-title":"Emerging Antifungal Resistance in Fungal Pathogens","volume":"11","author":"Hui","year":"2024","journal-title":"Curr Clin Micro Rpt."},{"key":"10.1016\/j.addr.2025.115740_bb0900","doi-asserted-by":"crossref","first-page":"fuaf001","DOI":"10.1093\/femsre\/fuaf001","article-title":"The impact of phenotypic heterogeneity on fungal pathogenicity and drug resistance","volume":"49","author":"Kozubowski","year":"2025","journal-title":"FEMS Microbiol. Rev."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0905","doi-asserted-by":"crossref","first-page":"106","DOI":"10.3390\/metabo10030106","volume":"10","author":"Hou\u0161\u0165","year":"2020","journal-title":"Antifungal Drugs. Metabolites."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb0910","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1086\/591861","article-title":"Antimicrobial-Resistant Pathogens Associated With Healthcare-Associated Infections: Annual Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2006\u20132007","volume":"29","author":"Hidron","year":"2008","journal-title":"Infect. Control Hosp. Epidemiol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0915","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1046\/j.1529-8019.2002.01533.x","article-title":"Candidiasis and other fungal diseases of the mouth","volume":"15","author":"Samaranayake","year":"2002","journal-title":"Dermatol. Ther."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb0920","doi-asserted-by":"crossref","DOI":"10.3390\/jof6010016","article-title":"On commensalism of Candida","volume":"6","author":"Romo","year":"2020","journal-title":"Journal of Fungi."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0925","doi-asserted-by":"crossref","first-page":"1366","DOI":"10.1128\/JCM.02117-09","article-title":"Results from the ARTEMIS DISK Global Antifungal Surveillance Study, 1997 to 2007: a 10.5-Year Analysis of Susceptibilities of Candida Species to Fluconazole and Voriconazole as Determined by CLSI Standardized Disk Diffusion","volume":"48","author":"Pfaller","year":"2010","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb0930","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1186\/1471-2334-6-21","article-title":"Epidemiological trends in nosocomial candidemia in intensive care","volume":"6","author":"Bassetti","year":"2006","journal-title":"BMC Infect. Dis."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb0935","doi-asserted-by":"crossref","first-page":"913","DOI":"10.3390\/jof9090913","article-title":"An Overview on Candida auris in Healthcare Settings","volume":"9","author":"Cristina","year":"2023","journal-title":"J Fungi (Basel)."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0940","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1053\/jhin.2001.1151","article-title":"Non-albicans Candida spp. causing fungaemia: pathogenicity and antifungal resistance","volume":"50","author":"Krcmery","year":"2002","journal-title":"J Hosp Infect."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0945","doi-asserted-by":"crossref","first-page":"606","DOI":"10.1128\/CMR.00013-08","article-title":"Candida parapsilosis, an emerging fungal pathogen","volume":"21","author":"Trofa","year":"2008","journal-title":"Clin. Microbiol. Rev."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0950","doi-asserted-by":"crossref","first-page":"570","DOI":"10.1086\/513615","article-title":"Prospective observational study of candidemia in S\u00e3o Paulo, Brazil: incidence rate, epidemiology, and predictors of mortality","volume":"28","author":"Colombo","year":"2007","journal-title":"Infect. Control Hosp. Epidemiol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0955","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1111\/j.1399-302X.2008.00439.x","article-title":"Mixed Candida albicans and Candida glabrata populations associated with the pathogenesis of denture stomatitis","volume":"23","author":"Coco","year":"2008","journal-title":"Oral Microbiol. Immunol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb0960","doi-asserted-by":"crossref","first-page":"857","DOI":"10.1016\/S0011-8532(22)02484-3","article-title":"Candida and candidosis:\u202f: Epidemiology, Diagnosis, and Therapeutic Management","volume":"36","author":"Fotos","year":"1992","journal-title":"Dent. Clin. N. Am."},{"key":"10.1016\/j.addr.2025.115740_bb0965","first-page":"146","article-title":"Finding of fungi on the mucous membrane of the gullet of a typhoid fever corpse","volume":"12","author":"Langenbeck","year":"1839","journal-title":"Neue Notizen aus dem Gebiete der Natur-und Heilkunde."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb0975","doi-asserted-by":"crossref","first-page":"e00074","DOI":"10.1128\/cmr.00074-23","article-title":"Novel antifungals and treatment approaches to tackle resistance and improve outcomes of invasive fungal disease","volume":"37","author":"Hoenigl","year":"2024","journal-title":"Clin. Microbiol. Rev."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb0980","doi-asserted-by":"crossref","first-page":"312","DOI":"10.3390\/antibiotics9060312","article-title":"Candidiasis and Mechanisms of Antifungal Resistance","volume":"9","author":"Bhattacharya","year":"2020","journal-title":"Antibiotics"},{"key":"10.1016\/j.addr.2025.115740_bb0985","article-title":"Echinocandins: The Expanding Antifungal Armamentarium","volume":"61(suppl_6):S604-S611","author":"Aguilar-Zapata","year":"2015","journal-title":"Clin. Infect. Dis."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb0990","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1086\/596757","article-title":"Clinical Practice Guidelines for the Management of Candidiasis: 2009 Update by the Infectious Diseases Society of America","volume":"48","author":"Pappas","year":"2009","journal-title":"Clinical infectious diseases\u00a0: an official publication of the Infectious Diseases Society of America."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb0995","doi-asserted-by":"crossref","first-page":"413","DOI":"10.4103\/0255-0857.158569","article-title":"Fluconazole susceptibility of 3,056 clinical isolates of Candida species from 2005 to 2009 in a tertiary-care hospital","volume":"33","author":"Ying","year":"2015","journal-title":"Indian J. Med. Microbiol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1000","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1053\/jhin.2001.1131","article-title":"Increase in prevalence of nosocomial non- Candida albicans candidaemia and the association of Candida krusei with fluconazole use","volume":"50","author":"Hope","year":"2002","journal-title":"J. Hosp. Infect."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1005","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1038\/s41579-019-0322-2","article-title":"Drug resistance and tolerance in fungi","volume":"18","author":"Berman","year":"2020","journal-title":"Nat. Rev. Microbiol."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1010","doi-asserted-by":"crossref","DOI":"10.1101\/cshperspect.a019752","article-title":"Mechanisms of Antifungal Drug Resistance","volume":"5","author":"Cowen","year":"2015","journal-title":"Cold Spring Harb. Perspect. Med."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1015","doi-asserted-by":"crossref","first-page":"608","DOI":"10.3390\/antibiotics12030608","article-title":"Potential Strategies to Control the Risk of Antifungal Resistance in Humans: A Comprehensive Review","volume":"12","author":"Rabaan","year":"2023","journal-title":"Antibiotics"},{"issue":"37","key":"10.1016\/j.addr.2025.115740_bb1020","doi-asserted-by":"crossref","first-page":"E8688","DOI":"10.1073\/pnas.1806002115","article-title":"Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen","volume":"115","author":"Ene","year":"2018","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"19","key":"10.1016\/j.addr.2025.115740_bb1025","doi-asserted-by":"crossref","first-page":"3275","DOI":"10.1007\/s00018-010-0421-8","article-title":"Sexual reproduction in the Candida clade: cryptic cycles, diverse mechanisms, and alternative functions","volume":"67","author":"Alby","year":"2010","journal-title":"Cell. Mol. Life Sci."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1030","doi-asserted-by":"crossref","first-page":"781","DOI":"10.1534\/genetics.115.178020","article-title":"Parasexual ploidy reduction drives population heterogeneity through random and transient aneuploidy in Candida albicans","volume":"200","author":"Hickman","year":"2015","journal-title":"Genetics"},{"issue":"7247","key":"10.1016\/j.addr.2025.115740_bb1035","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1038\/nature08064","article-title":"Evolution of pathogenicity and sexual reproduction in eight Candida genomes","volume":"459","author":"Butler","year":"2009","journal-title":"Nature"},{"key":"10.1016\/j.addr.2025.115740_bb1040","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.58349","article-title":"Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs. Verstrepen KJ, Wittkopp PJ, eds","volume":"9","author":"Todd","year":"2020","journal-title":"eLife"},{"key":"10.1016\/j.addr.2025.115740_bb1045","doi-asserted-by":"crossref","DOI":"10.1101\/2022.01.20.477007","article-title":"Complex genetics cause and constrain fungal persistence in different parts of the mammalian body","author":"Mullis","year":"2022","journal-title":"Genetics"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1050","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.1001815","article-title":"A Tetraploid Intermediate Precedes Aneuploid Formation in Yeasts Exposed to Fluconazole","volume":"12","author":"Harrison","year":"2014","journal-title":"PLoS Biol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1055","doi-asserted-by":"crossref","first-page":"e03052","DOI":"10.1128\/mbio.03052-22","article-title":"Directed Evolution Detects Supernumerary Centric Chromosomes Conferring Resistance to Azoles in Candida auris","volume":"13","author":"Narayanan","year":"2022","journal-title":"mBio"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1060","first-page":"e00508","article-title":"Aneuploidy Underlies Tolerance and Cross-Tolerance to Drugs in Candida parapsilosis. Microbiology","volume":"9","author":"Yang","year":"2021","journal-title":"Spectrum"},{"key":"10.1016\/j.addr.2025.115740_bb1065","article-title":"Cryptococcus neoformans, Unlike Candida albicans, Forms Aneuploid Clones Directly from Uninucleated Cells under Fluconazole Stress","volume":"9(6):10.1128\/mbio.01290-18","author":"Chang","year":"2018","journal-title":"mBio"},{"key":"10.1016\/j.addr.2025.115740_bb1070","volume":"2(3):10.1128\/msphere.00205-17","author":"Altamirano","year":"2017","journal-title":"Fluconazole-Induced Ploidy Change in Cryptococcus neoformans Results from the Uncoupling of Cell Growth and Nuclear Division. mSphere."},{"key":"10.1016\/j.addr.2025.115740_bb1075","article-title":"Polyploid Titan Cells Produce Haploid and Aneuploid Progeny To Promote Stress Adaptation","volume":"6(5):10.1128\/mbio.01340-15","author":"Gerstein","year":"2015","journal-title":"mBio"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1080","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1128\/mBio.00129-11","article-title":"Stress alters rates and types of loss of heterozygosity in Candida albicans","volume":"2","author":"Forche","year":"2011","journal-title":"MBio"},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb1085","doi-asserted-by":"crossref","first-page":"4019","DOI":"10.1534\/g3.119.400752","article-title":"The Magnitude of Candida albicans Stress-Induced Genome Instability Results from an Interaction Between Ploidy and Antifungal Drugs","volume":"9","author":"Avramovska","year":"2019","journal-title":"G3 Genes|Genomes|Genetics."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1090","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1101\/gr.174623.114","article-title":"Genetic and phenotypic intra-species variation in Candida albicans","volume":"25","author":"Hirakawa","year":"2015","journal-title":"Genome Res."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1095","article-title":"Aneuploidy Mediates Rapid Adaptation to a Subinhibitory Amount of Fluconazole in Candida albicans. Microbiology","volume":"11","author":"Sun","year":"2023","journal-title":"Spectrum"},{"issue":"37","key":"10.1016\/j.addr.2025.115740_bb1100","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.1806002115","article-title":"Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen","volume":"115","author":"Ene","year":"2018","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1105","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1534\/genetics.118.301019","article-title":"Rapid Phenotypic and Genotypic Diversification After Exposure to the Oral Host Niche in Candida albicans","volume":"209","author":"Forche","year":"2018","journal-title":"Genetics"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1110","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1534\/genetics.109.103325","article-title":"Evolution in Candida albicans populations during a single passage through a mouse host","volume":"182","author":"Forche","year":"2009","journal-title":"Genetics"},{"key":"10.1016\/j.addr.2025.115740_bb1115","article-title":"Blood Cultures at Baseline and During Persistent Candidemia Contain Populations of Genetically Diverse Candida Albicans Strains that May Differ in Virulence and Antifungal Responsiveness","volume":"6","author":"Fleres","year":"2024","journal-title":"Social Science Research Network. Preprint posted online August"},{"issue":"6414","key":"10.1016\/j.addr.2025.115740_bb1120","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1126\/science.aat0537","article-title":"Experimental evolution of a fungal pathogen into a gut symbiont","volume":"362","author":"Tso","year":"2018","journal-title":"Science"},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb1125","doi-asserted-by":"crossref","first-page":"1007","DOI":"10.1016\/j.cub.2007.05.017","article-title":"Transcriptional rewiring of fungal galactose-metabolism circuitry","volume":"17","author":"Martchenko","year":"2007","journal-title":"Curr. Biol."},{"issue":"8004","key":"10.1016\/j.addr.2025.115740_bb1130","doi-asserted-by":"crossref","first-page":"620","DOI":"10.1038\/s41586-024-07142-4","article-title":"The hyphal-specific toxin candidalysin promotes fungal gut commensalism","volume":"627","author":"Liang","year":"2024","journal-title":"Nature"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb1135","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.00567-25","article-title":"Commensal colonization of Candida albicans in the mouse gastrointestinal tract is mediated via expression of candidalysin and adhesins","volume":"13","author":"Mauk","year":"2025","journal-title":"Microbiol Spectr."},{"key":"10.1016\/j.addr.2025.115740_bb1140","series-title":"Screen for Candida Albicans Virulence Factors That Modulate the Host Immune Response in the Larval Zebrafish. Doctoral dissertation. The University of Maine","author":"Blair","year":"2025"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1145","doi-asserted-by":"crossref","first-page":"e00842","DOI":"10.1128\/mbio.00842-22","article-title":"Genomic Diversity across Candida auris Clinical Isolates Shapes Rapid Development of Antifungal Resistance In Vitro and In Vivo","volume":"13","author":"Burrack","year":"2022","journal-title":"mBio"},{"issue":"5908","key":"10.1016\/j.addr.2025.115740_bb1150","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1038\/302495a0","article-title":"Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations","volume":"302","author":"Paquin","year":"1983","journal-title":"Nature"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1155","doi-asserted-by":"crossref","first-page":"901","DOI":"10.3390\/genes10110901","article-title":"Mitotic Recombination and Adaptive Genomic Changes in Human Pathogenic Fungi","volume":"10","author":"Gusa","year":"2019","journal-title":"Genes"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1160","doi-asserted-by":"crossref","first-page":"e00129","DOI":"10.1128\/mBio.00129-11","article-title":"Stress alters rates and types of loss of heterozygosity in Candida albicans","volume":"2","author":"Forche","year":"2011","journal-title":"mBio"},{"issue":"47","key":"10.1016\/j.addr.2025.115740_bb1165","doi-asserted-by":"crossref","first-page":"12040","DOI":"10.1073\/pnas.1807698115","article-title":"Evolution of drug resistance in an antifungal-naive chronic Candida lusitaniae infection","volume":"115","author":"Demers","year":"2018","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1170","doi-asserted-by":"crossref","first-page":"2563","DOI":"10.1038\/s41598-019-38768-4","article-title":"Within-Host Genomic Diversity of Candida albicans in Healthy Carriers","volume":"9","author":"Sitterl\u00e9","year":"2019","journal-title":"Sci. Rep."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1175","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1012154","article-title":"A gain-of-function mutation in zinc cluster transcription factor Rob1 drives Candida albicans adaptive growth in the cystic fibrosis lung environment","volume":"20","author":"Gnaien","year":"2024","journal-title":"PLoS Pathog."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1180","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1005308","article-title":"Global Analysis of the Fungal Microbiome in Cystic Fibrosis Patients Reveals Loss of Function of the Transcriptional Repressor Nrg1 as a Mechanism of Pathogen Adaptation","volume":"11","author":"Kim","year":"2015","journal-title":"PLoS Pathog."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1185","first-page":"e01171","article-title":"Mrs4 loss of function in fungi during adaptation to the cystic fibrosis lung","volume":"14","author":"Murante","year":"2023","journal-title":"mBio"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1190","first-page":"629","article-title":"Cellular iron homeostasis mediated by the Mrs4\u2013Ccc1\u2013Smf3 pathway is essential for mitochondrial function, morphogenesis and virulence in Candida albicans. Biochimica et Biophysica Acta (BBA) - Molecular","volume":"1843","author":"Xu","year":"2014","journal-title":"Cell Res."},{"key":"10.1016\/j.addr.2025.115740_bb1195","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.00662","article-title":"The evolution of drug resistance in clinical isolates of Candida albicans","volume":"4","author":"Ford","year":"2015","journal-title":"eLife"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1200","doi-asserted-by":"crossref","first-page":"2923","DOI":"10.1038\/s41564-024-01795-7","article-title":"Single-cell detection of copy number changes reveals dynamic mechanisms of adaptation to antifungals in Candida albicans","volume":"9","author":"Zhou","year":"2024","journal-title":"Nat. Microbiol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1205","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0298724","article-title":"Selection of ethanol tolerant strains of Candida albicans by repeated ethanol exposure results in strains with reduced susceptibility to fluconazole","volume":"19","author":"Day","year":"2024","journal-title":"PLoS One"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1210","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1006144","article-title":"A feast for Candida: metabolic plasticity confers an edge for virulence","volume":"13","author":"Miram\u00f3n","year":"2017","journal-title":"PLoS Pathog."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1215","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.02347-19","article-title":"Remasking of Candida albicans \u03b2-Glucan in Response to Environmental pH Is Regulated by Quorum Sensing. Alspaugh JA, ed","volume":"10","author":"Cottier","year":"2019","journal-title":"mBio"},{"key":"10.1016\/j.addr.2025.115740_bb1220","first-page":"6","article-title":"\u03b2-glucan Exposure on the Fungal Cell Wall Tightly Correlates with Competitive Fitness of Candida Species in the Mouse Gastrointestinal Tract","author":"Sem","year":"2016","journal-title":"Front. Cell. Infect. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb1225","doi-asserted-by":"crossref","DOI":"10.1128\/mSphere.00555-17","article-title":"The Human Gut Microbial Metabolome Modulates Fungal Growth via the TOR Signaling Pathway. Mitchell AP, ed","author":"Garc\u00eda","year":"2017","journal-title":"mSphere"},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1230","doi-asserted-by":"crossref","first-page":"2785","DOI":"10.1093\/jac\/dku198","article-title":"In vivo imaging of disseminated murine Candida albicans infection reveals unexpected host sites of fungal persistence during antifungal therapy","volume":"69","author":"Jacobsen","year":"2014","journal-title":"J. Antimicrob. Chemother."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1235","doi-asserted-by":"crossref","first-page":"5858","DOI":"10.1128\/AAC.01252-16","article-title":"A Combination Fluorescence Assay Demonstrates Increased Efflux Pump Activity as a Resistance Mechanism in Azole-Resistant Vaginal Candida albicans Isolates","volume":"60","author":"Bhattacharya","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1240","doi-asserted-by":"crossref","first-page":"1153","DOI":"10.1093\/jac\/dkl141","article-title":"Amphotericin B tissue distribution in autopsy material after treatment with liposomal amphotericin B and amphotericin B colloidal dispersion","volume":"57","author":"Vogelsinger","year":"2006","journal-title":"J. Antimicrob. Chemother."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1245","doi-asserted-by":"crossref","first-page":"1191","DOI":"10.1128\/EC.4.7.1191-1202.2005","article-title":"Cell Cycle Dynamics and Quorum Sensing in Candida albicans Chlamydospores Are Distinct from Budding and Hyphal Growth","volume":"4","author":"Martin","year":"2005","journal-title":"Eukaryot. Cell"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb1250","doi-asserted-by":"crossref","first-page":"294","DOI":"10.15698\/mic2017.09.589","article-title":"Farnesol inhibits translation to limit growth and filamentation in C. albicans and S. cerevisiae","volume":"4","author":"Egbe","year":"2025","journal-title":"Microb Cell."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1255","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1016\/j.fbr.2017.07.002","article-title":"Epigenetic determinants of phenotypic plasticity in Candida albicans","volume":"32","author":"Rai","year":"2018","journal-title":"Fungal Biology Reviews."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1260","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1128\/mSphere.00167-17","article-title":"Adaptive mistranslation accelerates the evolution of fluconazole resistance and induces major genomic and gene expression alterations in Candida albicans","volume":"2","author":"Weil","year":"2017","journal-title":"Msphere"},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1265","doi-asserted-by":"crossref","first-page":"R206","DOI":"10.1186\/gb-2007-8-10-r206","article-title":"A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans","volume":"8","author":"Gomes","year":"2007","journal-title":"Genome Biol."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1270","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0000996","article-title":"A Genetic Code Alteration Is a Phenotype Diversity Generator in the Human Pathogen Candida albicans","volume":"2","author":"Miranda","year":"2007","journal-title":"PLoS One"},{"key":"10.1016\/j.addr.2025.115740_bb1275","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2315926121","article-title":"C B, A. Identification of an active RNAi pathway in Candida albicans","author":"Iracane","year":"2024","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1280","doi-asserted-by":"crossref","DOI":"10.1016\/j.celrep.2021.108781","article-title":"Functional connections between cell cycle and proteostasis in the regulation of Candida albicans morphogenesis","volume":"34","author":"Hossain","year":"2021","journal-title":"Cell Rep."},{"issue":"14","key":"10.1016\/j.addr.2025.115740_bb1285","doi-asserted-by":"crossref","first-page":"3363","DOI":"10.1091\/mbc.e09-03-0210","article-title":"Transcriptional Analysis of the Candida albicans Cell Cycle","volume":"20","author":"C\u00f4te","year":"2009","journal-title":"Mol. Biol. Cell"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1290","first-page":"382","article-title":"Odds, Candida and Candidosis, A Review and Bibliography (Second Edition). X + 468 S., 97 Abb., 92 Tab. u. 22 Farbtafeln. London\u2014Philadelphia\u2014Toronto\u2014Sydney\u2014Tokyo 1988. Bailli\u00e8re Tindall (W. B. Saunders). \u00a3 35.00. ISBN: 0\u20137020\u20131265\u20133","volume":"30","author":"Stelzner","year":"1990","journal-title":"J. Basic Microbiol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1295","doi-asserted-by":"crossref","first-page":"1900","DOI":"10.1128\/AAC.42.8.1900","article-title":"Effect of Growth Rate on Resistance ofCandida albicans Biofilms to Antifungal Agents","volume":"42","author":"Baillie","year":"1998","journal-title":"Antimicrob. Agents Chemother."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1300","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1128\/AAC.49.2.668-679.2005","article-title":"Mechanisms of Azole Resistance in Clinical Isolates of Candida glabrata Collected during a Hospital Survey of Antifungal Resistance","volume":"49","author":"Sanguinetti","year":"2005","journal-title":"Antimicrob. Agents Chemother."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1305","doi-asserted-by":"crossref","first-page":"2146","DOI":"10.1128\/AAC.42.8.2146","article-title":"Iron-Limited Biofilms of Candida albicans and Their Susceptibility to Amphotericin B","volume":"42","author":"Baillie","year":"1998","journal-title":"Antimicrob. Agents Chemother."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1310","doi-asserted-by":"crossref","first-page":"1884","DOI":"10.1128\/AAC.01473-07","article-title":"Absence of Amphotericin B-Tolerant Persister Cells in Biofilms of Some Candida Species","volume":"52","author":"Al-Dhaheri","year":"2008","journal-title":"Antimicrob. Agents Chemother."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1315","doi-asserted-by":"crossref","first-page":"3708","DOI":"10.1128\/AAC.00997-06","article-title":"A Small Subpopulation of Blastospores in Candida albicans Biofilms Exhibit Resistance to Amphotericin B Associated with Differential Regulation of Ergosterol and \u03b2-1,6-Glucan Pathway Genes","volume":"50","author":"Khot","year":"2006","journal-title":"Antimicrob. Agents Chemother."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb1320","doi-asserted-by":"crossref","first-page":"4033","DOI":"10.1128\/AAC.00280-11","article-title":"Superoxide Dismutases Are Involved in Candida albicans Biofilm Persistence against Miconazole","volume":"55","author":"Bink","year":"2011","journal-title":"Antimicrob. Agents Chemother."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1325","doi-asserted-by":"crossref","first-page":"389","DOI":"10.3390\/biomedicines12020389","article-title":"A Preliminary Evaluation on the Antifungal Efficacy of VT-1161 against Persister Candida albicans Cells in Vulvovaginal Candidiasis","volume":"12","author":"Sinoca","year":"2024","journal-title":"Biomedicines"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1330","doi-asserted-by":"crossref","first-page":"3839","DOI":"10.1128\/AAC.00684-06","article-title":"Candida albicans Biofilms Produce Antifungal-Tolerant Persister Cells","volume":"50","author":"LaFleur","year":"2006","journal-title":"Antimicrob. Agents Chemother."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1335","doi-asserted-by":"crossref","first-page":"521","DOI":"10.3390\/antibiotics13060521","article-title":"Antifungal Activity, Synergism with Fluconazole or Amphotericin B and Potential Mechanism of Direct Current against Candida albicans Biofilms and Persisters","volume":"13","author":"Zou","year":"2024","journal-title":"Antibiotics"},{"key":"10.1016\/j.addr.2025.115740_bb1340","article-title":"Candida albicans Biofilms Are Generally Devoid of Persister Cells","volume":"63(5):10.1128\/aac.01979-18","author":"Denega","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1345","doi-asserted-by":"crossref","DOI":"10.1101\/cshperspect.a019729","article-title":"Fungal Biofilms, Drug Resistance, and Recurrent Infection","volume":"4","author":"Desai","year":"2014","journal-title":"Cold Spring Harb. Perspect. Med."},{"key":"10.1016\/j.addr.2025.115740_bb1350","doi-asserted-by":"crossref","DOI":"10.1016\/j.mib.2022.102237","article-title":"Antifungal drug-resistance mechanisms in Candida biofilms","volume":"71","author":"Kaur","year":"2023","journal-title":"Curr. Opin. Microbiol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1355","article-title":"Fungal Biofilm Resistance","volume":"2012","author":"Ramage","year":"2012","journal-title":"International Journal of Microbiology."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1360","doi-asserted-by":"crossref","first-page":"442","DOI":"10.1111\/j.1567-1364.2007.00347.x","article-title":"Characteristics of biofilm formation by Candida tropicalis and antifungal resistance","volume":"8","author":"Bizerra","year":"2008","journal-title":"FEMS Yeast Res."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1365","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1038\/nrmicro2475","article-title":"Genetic control of Candida albicans biofilm development","volume":"9","author":"Finkel","year":"2011","journal-title":"Nat. Rev. Microbiol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1370","doi-asserted-by":"crossref","first-page":"4333","DOI":"10.1128\/IAI.71.8.4333-4340.2003","article-title":"Mechanism of Fluconazole Resistance in Candida albicans Biofilms: Phase-Specific Role of Efflux Pumps and Membrane Sterols","volume":"71","author":"Mukherjee","year":"2003","journal-title":"Infect. Immun."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1375","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1002848","article-title":"A Candida Biofilm-Induced Pathway for Matrix Glucan Delivery: Implications for Drug Resistance","volume":"8","author":"Taff","year":"2012","journal-title":"PLoS Pathog."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1380","doi-asserted-by":"crossref","first-page":"6235","DOI":"10.1038\/s41467-021-26525-z","article-title":"Coordination of fungal biofilm development by extracellular vesicle cargo","volume":"12","author":"Zarnowski","year":"2021","journal-title":"Nat. Commun."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1385","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1128\/CMR.15.2.167-193.2002","article-title":"Biofilms: Survival Mechanisms of Clinically Relevant Microorganisms","volume":"15","author":"Donlan","year":"2002","journal-title":"Clin. Microbiol. Rev."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1390","doi-asserted-by":"crossref","first-page":"681","DOI":"10.3109\/13693780802549594","article-title":"Biofilms of non-Candida albicans Candida species: quantification, structure and matrix composition","volume":"47","author":"Silva","year":"2009","journal-title":"Med. Mycol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1395","doi-asserted-by":"crossref","first-page":"288","DOI":"10.1111\/j.1574-6976.2011.00278.x","article-title":"Candida glabrata, Candida parapsilosis and Candida tropicalis: biology, epidemiology, pathogenicity and antifungal resistance","volume":"36","author":"Silva","year":"2012","journal-title":"FEMS Microbiol. Rev."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1400","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1111\/j.1439-0507.2011.02047.x","article-title":"Addition of DNase improves the in vitro activity of antifungal drugs against Candida albicans biofilms","volume":"55","author":"Martins","year":"2012","journal-title":"Mycoses"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1405","doi-asserted-by":"crossref","first-page":"510","DOI":"10.1128\/AAC.01056-06","article-title":"Putative Role of \u03b2-1,3 Glucans in Candida albicans Biofilm Resistance","volume":"51","author":"Nett","year":"2007","journal-title":"Antimicrob. Agents Chemother."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1410","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1128\/AAC.50.3.1021-1033.2006","article-title":"Susceptibility of Cryptococcus neoformans Biofilms to Antifungal Agents In Vitro","volume":"50","author":"Martinez","year":"2006","journal-title":"Antimicrob. Agents Chemother."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1415","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2218163120","article-title":"Aneuploidy and gene dosage regulate filamentation and host colonization by Candida albicans","volume":"120","author":"Kakade","year":"2023","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1420","doi-asserted-by":"crossref","first-page":"1053","DOI":"10.1128\/EC.2.5.1053-1060.2003","article-title":"Engineered Control of Cell Morphology In Vivo Reveals Distinct Roles for Yeast and Filamentous Forms of Candida albicans during Infection","volume":"2","author":"Saville","year":"2003","journal-title":"Eukaryot. Cell"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1425","doi-asserted-by":"crossref","first-page":"939","DOI":"10.1016\/S0092-8674(00)80358-X","article-title":"Nonfilamentous C. albicans Mutants Are Avirulent","volume":"90","author":"Lo","year":"1997","journal-title":"Cell"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1430","doi-asserted-by":"crossref","DOI":"10.1128\/mbio.02745-23","article-title":"Respiration supports intraphagosomal filamentation and escape of Candida albicans from macrophages","volume":"14","author":"Case","year":"2023","journal-title":"Mbio"},{"key":"10.1016\/j.addr.2025.115740_bb1435","doi-asserted-by":"crossref","first-page":"1409","DOI":"10.1007\/s10482-019-01271-x","article-title":"Candida spp. and phagocytosis: multiple evasion mechanisms","volume":"112","author":"Oliver","year":"2019","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1440","doi-asserted-by":"crossref","first-page":"971","DOI":"10.1128\/MCB.20.3.971-978.2000","article-title":"RIM101 -Dependent and -Independent Pathways Govern pH Responses in Candida albicans","volume":"20","author":"Davis","year":"2000","journal-title":"Mol. Cell. Biol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1445","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1016\/j.chom.2013.10.008","article-title":"Synergistic regulation of hyphal elongation by hypoxia, CO2, and nutrient conditions controls the virulence of Candida albicans","volume":"14","author":"Lu","year":"2013","journal-title":"Cell Host Microbe"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1450","doi-asserted-by":"crossref","first-page":"432","DOI":"10.1016\/j.chom.2019.02.008","article-title":"Candida albicans morphogenesis programs control the balance between gut commensalism and invasive infection","volume":"25","author":"Witchley","year":"2019","journal-title":"Cell Host Microbe"},{"issue":"23","key":"10.1016\/j.addr.2025.115740_bb1455","doi-asserted-by":"crossref","first-page":"14907","DOI":"10.1073\/pnas.232566499","article-title":"Metabolic specialization associated with phenotypic switching in Candida albicans","volume":"99","author":"Lan","year":"2002","journal-title":"Proc. Natl. Acad. Sci."},{"key":"10.1016\/j.addr.2025.115740_bb1460","article-title":"Phenotypic Profiling Reveals that Candida albicans Opaque Cells Represent a Metabolically Specialized Cell State Compared to Default White Cells","volume":"7(6):10.1128\/mbio.01269-16","author":"Ene","year":"2016","journal-title":"mBio"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1465","doi-asserted-by":"crossref","first-page":"e00196","DOI":"10.1128\/mmbr.00196-23","article-title":"Biogenesis, germination, and pathogenesis of Cryptococcus spores","volume":"88","author":"Ortiz","year":"2024","journal-title":"Microbiol. Mol. Biol. Rev."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1470","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1006978","article-title":"The Cryptococcus neoformans Titan cell is an inducible and regulated morphotype underlying pathogenesis","volume":"14","author":"Dambuza","year":"2018","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.addr.2025.115740_bb1475","article-title":"Phenotypic Variability Correlates with Clinical Outcome in Cryptococcus Isolates Obtained from Botswanan HIV\/AIDS Patients","volume":"9(5)","author":"Fernandes","year":"2018","journal-title":"mBio"},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1480","doi-asserted-by":"crossref","first-page":"734","DOI":"10.3390\/jof8070734","article-title":"Cryptococcus neoformans Genotypic Diversity and Disease Outcome among HIV Patients in Africa","volume":"8","author":"Kassaza","year":"2022","journal-title":"Journal of Fungi."},{"key":"10.1016\/j.addr.2025.115740_bb1485","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1016\/j.fgb.2018.04.013","article-title":"Gene co-expression analysis identifies gene clusters associated with isotropic and polarized growth in Aspergillus fumigatus conidia","volume":"116","author":"Baltussen","year":"2018","journal-title":"Fungal Genet. Biol."},{"key":"10.1016\/j.addr.2025.115740_bb1490","article-title":"Twenty Years of the SENTRY Antifungal Surveillance Program: Results for Candida Species From 1997\u20132016. Open Forum","volume":"6(Supplement_1):S79-S94","author":"Pfaller","year":"2019","journal-title":"Infect. Dis. Ther."},{"key":"10.1016\/j.addr.2025.115740_bb1495","first-page":"14","article-title":"Long-term stability of acquired drug resistance and resistance associated mutations in the fungal pathogen Nakaseomyces glabratus (Candida glabrata)","author":"Ksiezopolska","year":"2024","journal-title":"Front. Cell. Infect. Microbiol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1500","doi-asserted-by":"crossref","first-page":"340","DOI":"10.1186\/s12879-015-1086-6","article-title":"Development of fluconazole resistance in a series of Candida parapsilosis isolates from a persistent candidemia patient with prolonged antifungal therapy","volume":"15","author":"Zhang","year":"2015","journal-title":"BMC Infect. Dis."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1505","doi-asserted-by":"crossref","first-page":"1210","DOI":"10.1042\/BST0331210","article-title":"Azole susceptibility and resistance in Candida dubliniensis","volume":"33","author":"Pinjon","year":"2005","journal-title":"Biochem. Soc. Trans."},{"key":"10.1016\/j.addr.2025.115740_bb1510","article-title":"Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris","volume":"11(3):10.1128\/mbio.00365-20","author":"Rybak","year":"2020","journal-title":"mBio"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1515","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1093\/cid\/ciw691","article-title":"Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses","volume":"64","author":"Lockhart","year":"2017","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.addr.2025.115740_bb1520","article-title":"Understanding Echinocandin Resistance in the Emerging Pathogen Candida auris","volume":"62(6):10.1128\/aac.00238-18","author":"Kordalewska","year":"2018","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1525","first-page":"84","article-title":"Fluconazole susceptibility and ERG11 gene expression in vaginal candida species isolated from lagos Nigeria","volume":"3","author":"Pam","year":"2012","journal-title":"Int J Mol Epidemiol Genet."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1530","doi-asserted-by":"crossref","first-page":"5052","DOI":"10.1038\/s41598-019-41513-6","article-title":"Gene Duplication Associated with Increased Fluconazole Tolerance in Candida auris cells of Advanced Generational Age","volume":"9","author":"Bhattacharya","year":"2019","journal-title":"Sci. Rep."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1535","doi-asserted-by":"crossref","first-page":"3653","DOI":"10.1128\/AAC.02652-15","article-title":"Resistance Mechanisms and Clinical Features of Fluconazole-Nonsusceptible Candida tropicalis Isolates Compared with Fluconazole-Less-Susceptible Isolates","volume":"60","author":"Choi","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1540","doi-asserted-by":"crossref","first-page":"5942","DOI":"10.1128\/AAC.01358-15","article-title":"Multidrug Transporters and Alterations in Sterol Biosynthesis Contribute to Azole Antifungal Resistance in Candida parapsilosis","volume":"59","author":"Berkow","year":"2015","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1545","doi-asserted-by":"crossref","first-page":"170","DOI":"10.1111\/j.1365-2958.2006.05357.x","article-title":"Heterozygosity and functional allelic variation in the Candida albicans efflux pump genes CDR1 and CDR2","volume":"62","author":"Holmes","year":"2006","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb1550","series-title":"Yeast Membrane Transport","article-title":"Candida Efflux ATPases and Antiporters in Clinical Drug Resistance","author":"Prasad","year":"2016"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1555","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1128\/AAC.03470-14","article-title":"Contribution of Clinically Derived Mutations in ERG11 to Azole Resistance in Candida albicans","volume":"59","author":"Flowers","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1560","doi-asserted-by":"crossref","first-page":"1289","DOI":"10.1128\/EC.00215-12","article-title":"Gain-of-Function Mutations in UPC2 Are a Frequent Cause of ERG11 Upregulation in Azole-Resistant Clinical Isolates of Candida albicans","volume":"11","author":"Flowers","year":"2012","journal-title":"Eukaryot. Cell"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1565","doi-asserted-by":"crossref","first-page":"5346","DOI":"10.1038\/s41467-018-07779-6","article-title":"Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species","volume":"9","author":"Mu\u00f1oz","year":"2018","journal-title":"Nat. Commun."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1570","first-page":"137","article-title":"Amino acid substitution in Cryptococcus neoformans lanosterol 14-\u03b1-demethylase involved in fluconazole resistance in clinical isolates","volume":"48","author":"Bosco-Borgeat","year":"2016","journal-title":"Rev. Argent. Microbiol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1575","doi-asserted-by":"crossref","first-page":"2053","DOI":"10.1093\/jac\/dkac161","article-title":"Molecular mechanisms of acquired antifungal drug resistance in principal fungal pathogens and EUCAST guidance for their laboratory detection and clinical implications","volume":"77","author":"Rogers","year":"2022","journal-title":"J. Antimicrob. Chemother."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1580","doi-asserted-by":"crossref","first-page":"677","DOI":"10.3390\/jof8070677","article-title":"Novel ABC Transporter Associated with Fluconazole Resistance in Aging of Cryptococcus neoformans","volume":"8","author":"Oliveira","year":"2022","journal-title":"Journal of Fungi."},{"key":"10.1016\/j.addr.2025.115740_bb1585","series-title":"Candida albicans isolates contain frequent heterozygous structural variants and transposable elements within genes and centromeres. Genome Research. Published online October 22","first-page":"279301","author":"Oggenfuss","year":"2024"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1590","doi-asserted-by":"crossref","first-page":"624","DOI":"10.1111\/j.1365-2958.2008.06176.x","article-title":"An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1","volume":"68","author":"Selmecki","year":"2008","journal-title":"Mol. Microbiol."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1595","doi-asserted-by":"crossref","first-page":"2378","DOI":"10.1128\/AAC.39.11.2378","article-title":"Mechanisms of resistance to azole antifungal agents in Candida albicans isolates from AIDS patients involve specific multidrug transporters","volume":"39","author":"Sanglard","year":"1995","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1600","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1007319","article-title":"Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs","volume":"14","author":"Mount","year":"2018","journal-title":"PLoS Genet."},{"issue":"14","key":"10.1016\/j.addr.2025.115740_bb1605","doi-asserted-by":"crossref","first-page":"9284","DOI":"10.1073\/pnas.102291099","article-title":"Population genomics of drug resistance in Candida albicans","volume":"99","author":"Cowen","year":"2002","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1610","article-title":"Step-wise evolution of azole resistance through copy number variation followed by KSR1 loss of heterozygosity in Candida albicans","volume":"20","author":"P VZ, C G, N K","year":"2024","journal-title":"PLoS Pathog."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1615","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1128\/CMR.00051-08","article-title":"Efflux-Mediated Antifungal Drug Resistance","volume":"22","author":"Cannon","year":"2009","journal-title":"Clin. Microbiol. Rev."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1620","doi-asserted-by":"crossref","first-page":"e00053","DOI":"10.1128\/aac.00053-22","article-title":"Candida auris Pan-Drug-Resistant to Four Classes of Antifungal Agents","volume":"66","author":"Jacobs","year":"2022","journal-title":"Antimicrob. Agents Chemother."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1625","doi-asserted-by":"crossref","first-page":"1273","DOI":"10.1021\/acsinfecdis.0c00117","article-title":"Unmasking the Amphotericin B Resistance Mechanisms in Candida haemulonii Species Complex","volume":"6","author":"Silva","year":"2020","journal-title":"ACS Infect Dis."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1630","doi-asserted-by":"crossref","first-page":"e02276","DOI":"10.1128\/aac.02276-21","article-title":"Comparative Transcriptomics Reveal Possible Mechanisms of Amphotericin B Resistance in Candida auris","volume":"66","author":"Shivarathri","year":"2022","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1635","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1016\/S0014-5793(96)01360-9","article-title":"Resistance to fluconazole and cross-resistance to amphotericin B in Candida albicans from AIDS patients caused by defective sterol \u03945,6-desaturation","volume":"400","author":"Kelly","year":"1997","journal-title":"FEBS Lett."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1640","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1128\/EC.00345-12","article-title":"Comparison of Sterol Import under Aerobic and Anaerobic Conditions in Three Fungal Species, Candida albicans, Candida glabrata, and Saccharomyces cerevisiae","volume":"12","author":"Zavrel","year":"2013","journal-title":"Eukaryot. Cell"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1645","doi-asserted-by":"crossref","first-page":"1833","DOI":"10.3201\/eid2011.140685","article-title":"Drug-Resistant Candida glabrata Infection in Cancer Patients","volume":"20","author":"Farmakiotis","year":"2014","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.addr.2025.115740_bb1650","article-title":"Echinocandin Resistance in Candida","volume":"61(suppl_6):S612-S617","author":"Perlin","year":"2015","journal-title":"Clin. Infect. Dis."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1655","doi-asserted-by":"crossref","first-page":"2305","DOI":"10.1128\/AAC.00262-08","article-title":"A Naturally Occurring Proline-to-Alanine Amino Acid Change in Fks1p in Candida parapsilosis, Candida orthopsilosis, and Candida metapsilosis Accounts for Reduced Echinocandin Susceptibility","volume":"52","author":"Garcia-Effron","year":"2008","journal-title":"Antimicrob. Agents Chemother."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1660","doi-asserted-by":"crossref","first-page":"105","DOI":"10.3390\/jof4030105","article-title":"Fungal Resistance to Echinocandins and the MDR Phenomenon in Candida glabrata","volume":"4","author":"Healey","year":"2018","journal-title":"Journal of Fungi."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb1665","doi-asserted-by":"crossref","first-page":"6304","DOI":"10.1128\/AAC.00813-12","article-title":"Fks1 and Fks2 Are Functionally Redundant but Differentially Regulated in Candida glabrata: Implications for Echinocandin Resistance","volume":"56","author":"Katiyar","year":"2012","journal-title":"Antimicrob. Agents Chemother."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1670","doi-asserted-by":"crossref","first-page":"1876","DOI":"10.1128\/AAC.00067-07","article-title":"Acquired Echinocandin Resistance in a Candida krusei Isolate Due to Modification of Glucan Synthase","volume":"51","author":"Kahn","year":"2007","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.addr.2025.115740_bb1675","article-title":"Deletion of ADA2 Increases Antifungal Drug Susceptibility and Virulence in Candida glabrata","volume":"62(3):10.1128\/aac.01924-17","author":"Yu","year":"2018","journal-title":"Antimicrob. Agents Chemother."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb1680","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1002718","article-title":"Global Analysis of the Evolution and Mechanism of Echinocandin Resistance in Candida glabrata","volume":"8","author":"Singh-Babak","year":"2012","journal-title":"PLoS Pathog."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1685","doi-asserted-by":"crossref","first-page":"909","DOI":"10.3390\/jof7110909","article-title":"Molecular Mechanisms of 5-Fluorocytosine Resistance in Yeasts and Filamentous Fungi","volume":"7","author":"Delma","year":"2021","journal-title":"Journal of Fungi."},{"key":"10.1016\/j.addr.2025.115740_bb1690","article-title":"Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae","volume":"10(6)","author":"Kannan","year":"2019","journal-title":"mBio"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1695","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1038\/s41467-019-13890-z","article-title":"5-fluorocytosine resistance is associated with hypermutation and alterations in capsule biosynthesis in Cryptococcus","volume":"11","author":"Billmyre","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.addr.2025.115740_bb1700","article-title":"Investigation of fluconazole heteroresistance in clinical and environmental isolates of Cryptococcus neoformans complex and Cryptococcus gattii complex in the state of Amazonas","volume":"60(3):myac005","author":"IMB","year":"2022","journal-title":"Brazil. Med Mycol."},{"key":"10.1016\/j.addr.2025.115740_bb1705","article-title":"S8.5d Cryptococcus neoformans and Cryptococcus gattii clinical isolates from Colombia develop heteroresistance to fluconazole at high concentrations","volume":"60(Supplement_1):myac072S85d","author":"Melendres","year":"2022","journal-title":"Med. Mycol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1710","doi-asserted-by":"crossref","first-page":"e00723","DOI":"10.1128\/Spectrum.00723-21","article-title":"Adaptation to Fluconazole via Aneuploidy Enables Cross-Adaptation to Amphotericin B and Flucytosine in Cryptococcus neoformans","volume":"9","author":"Yang","year":"2021","journal-title":"Microbiology Spectrum."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1715","doi-asserted-by":"crossref","first-page":"999","DOI":"10.1172\/JCI124516","article-title":"Dynamic ploidy changes drive fluconazole resistance in human cryptococcal meningitis","volume":"129","author":"Stone","year":"2019","journal-title":"J. Clin. Invest."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1720","doi-asserted-by":"crossref","first-page":"174","DOI":"10.1128\/AAC.00301-11","article-title":"In Vitro Acquisition of Secondary Azole Resistance in Aspergillus fumigatus Isolates after Prolonged Exposure to Itraconazole: Presence of Heteroresistant Populations","volume":"56","author":"Escribano","year":"2012","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1725","first-page":"396","article-title":"In vivo development of fluconazole resistance in serial Cryptococcus gattii isolates from a cat","volume":"55","author":"Sykes","year":"2017","journal-title":"Med. Mycol."},{"key":"10.1016\/j.addr.2025.115740_bb1730","first-page":"8","article-title":"Colony and Single Cell Level Analysis of the Heterogeneous Response of Cryptococcus neoformans to Fluconazole","author":"Altamirano","year":"2018","journal-title":"Front. Cell. Infect. Microbiol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1735","doi-asserted-by":"crossref","first-page":"898","DOI":"10.3390\/biomedicines11030898","article-title":"Identification and Elimination of Antifungal Tolerance in Candida auris","volume":"11","author":"Rasouli Koohi","year":"2023","journal-title":"Biomedicines"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1740","doi-asserted-by":"crossref","first-page":"e00227","DOI":"10.1128\/mbio.00227-23","article-title":"Antifungal Tolerance and Resistance Emerge at Distinct Drug Concentrations and Rely upon Different Aneuploid Chromosomes","volume":"14","author":"Yang","year":"2023","journal-title":"mBio"},{"key":"10.1016\/j.addr.2025.115740_bb1745","first-page":"11","article-title":"Identification and Characterization of Mediators of Fluconazole Tolerance in Candida albicans","author":"Delarze","year":"2020","journal-title":"Front. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1750","doi-asserted-by":"crossref","first-page":"542","DOI":"10.1038\/s41564-022-01072-5","article-title":"Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance","volume":"7","author":"Yu","year":"2022","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb1755","doi-asserted-by":"crossref","DOI":"10.1016\/j.mib.2024.102439","article-title":"Beyond resistance: antifungal heteroresistance and antifungal tolerance in fungal pathogens","volume":"78","author":"Yang","year":"2024","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb1760","article-title":"Acquisition of cross-azole tolerance and aneuploidy in Candida albicans strains evolved to posaconazole","volume":"12(9):jkac156","author":"Kukurudz","year":"2022","journal-title":"G3 Genes|Genomes|Genetics."},{"key":"10.1016\/j.addr.2025.115740_bb1765","first-page":"14","article-title":"Aneuploidy enables cross-tolerance to unrelated antifungal drugs in Candida parapsilosis","author":"Sun","year":"2023","journal-title":"Front. Microbiol."},{"issue":"1392564","key":"10.1016\/j.addr.2025.115740_bb1770","article-title":"Miconazole induces aneuploidy-mediated tolerance in Candida albicans that is dependent on Hsp90 and calcineurin. Frontiers in Cellular and Infection","volume":"14","author":"Guo","year":"2024","journal-title":"Microbiology"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1775","doi-asserted-by":"crossref","first-page":"2470","DOI":"10.1038\/s41467-018-04926-x","article-title":"Antifungal tolerance is a subpopulation effect distinct from resistance and is associated with persistent candidemia","volume":"9","author":"Rosenberg","year":"2018","journal-title":"Nat. Commun."},{"key":"10.1016\/j.addr.2025.115740_bb1780","article-title":"The Rim Pathway Mediates Antifungal Tolerance in Candida albicans through Newly Identified Rim101 Transcriptional Targets, Including Hsp90 and Ipt1","volume":"62(3):10.1128\/aac.01785-17","author":"Garnaud","year":"2018","journal-title":"Antimicrob. Agents Chemother."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb1785","doi-asserted-by":"crossref","first-page":"2818","DOI":"10.1073\/pnas.0813394106","article-title":"Harnessing Hsp90 function as a powerful, broadly effective therapeutic strategy for fungal infectious disease","volume":"106","author":"Cowen","year":"2009","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb1790","doi-asserted-by":"crossref","first-page":"7330","DOI":"10.1128\/IAI.72.12.7330-7333.2004","article-title":"The Calcineurin Target, Crz1, Functions in Azole Tolerance but Is Not Required for Virulence of Candida albicans","volume":"72","author":"Onyewu","year":"2004","journal-title":"Infect. Immun."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1795","doi-asserted-by":"crossref","first-page":"412","DOI":"10.1074\/jbc.M117.807032","article-title":"Azole resistance in a Candida albicans mutant lacking the ABC transporter CDR6\/ROA1 depends on TOR signaling","volume":"293","author":"Khandelwal","year":"2018","journal-title":"J. Biol. Chem."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1800","doi-asserted-by":"crossref","first-page":"146","DOI":"10.1128\/AAC.01486-12","article-title":"Elevated Chitin Content Reduces the Susceptibility of Candida Species to Caspofungin","volume":"57","author":"Walker","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1805","doi-asserted-by":"crossref","first-page":"346","DOI":"10.1038\/s41564-023-01561-1","article-title":"Brain glucose induces tolerance of Cryptococcus neoformans to amphotericin B during meningitis","volume":"9","author":"Chen","year":"2024","journal-title":"Nat. Microbiol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1810","doi-asserted-by":"crossref","first-page":"321","DOI":"10.1007\/s12223-022-01018-8","article-title":"Anaerobic conditions are a major influence on Candida albicans chlamydospore formation","volume":"68","author":"Williams","year":"2023","journal-title":"Folia Microbiol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1815","doi-asserted-by":"crossref","first-page":"669","DOI":"10.1016\/j.mib.2012.09.006","article-title":"Genetic control of asexual sporulation in filamentous fungi","volume":"15","author":"Park","year":"2012","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb1820","doi-asserted-by":"crossref","DOI":"10.1146\/annurev-micro-020518-120210","article-title":"Life Cycle of Cryptococcus neoformans","author":"Zhao","year":"2019","journal-title":"Annual Review of Microbiology"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1825","doi-asserted-by":"crossref","first-page":"94","DOI":"10.3390\/jof6020094","article-title":"Mucorales Species and Macrophages","volume":"6","author":"Nicol\u00e1s","year":"2020","journal-title":"Journal of Fungi."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1830","doi-asserted-by":"crossref","first-page":"3333","DOI":"10.1038\/s41467-018-05820-2","article-title":"Iron restriction inside macrophages regulates pulmonary host defense against Rhizopus species","volume":"9","author":"Andrianaki","year":"2018","journal-title":"Nat. Commun."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1835","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1186\/s12864-016-2689-z","article-title":"Comparative transcriptome analysis revealing dormant conidia and germination associated genes in Aspergillus species: an essential role for AtfA in conidial dormancy","volume":"17","author":"Hagiwara","year":"2016","journal-title":"BMC Genomics"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1840","doi-asserted-by":"crossref","DOI":"10.1128\/iai.00487-24","article-title":"Immunometabolic reprogramming in macrophages infected with active and dormant Cryptococcus neoformans: differential modulation of respiration, glycolysis, and fatty acid utilization","volume":"93","author":"Marina","year":"2025","journal-title":"Infect. Immun."},{"key":"10.1016\/j.addr.2025.115740_bb1845","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1016\/j.mib.2020.07.006","article-title":"Impact of bacterial persisters on their host","volume":"59","author":"Moldoveanu","year":"2021","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb1850","series-title":"Persister Cells. Annual Review of Microbiology","author":"Lewis","year":"2010"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1855","doi-asserted-by":"crossref","first-page":"1183","DOI":"10.1038\/s41467-023-36882-6","article-title":"Macrophage internalization creates a multidrug-tolerant fungal persister reservoir and facilitates the emergence of drug resistance","volume":"14","author":"Arastehfar","year":"2023","journal-title":"Nat. Commun."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1860","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1016\/j.chom.2023.12.012","article-title":"Fungicide-tolerant persister formation during cryptococcal pulmonary infection","volume":"32","author":"Ke","year":"2024","journal-title":"Cell Host Microbe"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1865","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1007\/s11046-015-9894-1","article-title":"Candida albicans Amphotericin B-Tolerant Persister Formation is Closely Related to Surface Adhesion","volume":"181","author":"Sun","year":"2016","journal-title":"Mycopathologia"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1870","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1186\/s12951-024-02415-6","article-title":"Synergistic activity of gold nanoparticles with amphotericin B on persister cells of Candida tropicalis biofilms","volume":"22","author":"Dasilva","year":"2024","journal-title":"J. Nanobiotechnol."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1875","doi-asserted-by":"crossref","first-page":"6101","DOI":"10.1128\/AAC.00543-15","article-title":"Delicate Metabolic Control and Coordinated Stress Response Critically Determine Antifungal Tolerance of Candida albicans Biofilm Persisters","volume":"59","author":"Li","year":"2015","journal-title":"Antimicrob. Agents Chemother."},{"issue":"36","key":"10.1016\/j.addr.2025.115740_bb1880","doi-asserted-by":"crossref","first-page":"22473","DOI":"10.1073\/pnas.2003700117","article-title":"Fungal biofilm architecture produces hypoxic microenvironments that drive antifungal resistance","volume":"117","author":"Kowalski","year":"2020","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1885","article-title":"Kicking sleepers out of bed: Macrophages promote reactivation of dormant Cryptococcus neoformans by extracellular vesicle release and non-lytic exocytosis","volume":"19","author":"de RJA","year":"2023","journal-title":"PLoS Pathog."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb1890","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1007945","article-title":"Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype","volume":"15","author":"Hommel","year":"2019","journal-title":"PLoS Pathog."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb1895","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1007301","article-title":"Fungal persister cells: The basis for recalcitrant infections?","volume":"14","author":"Wuyts","year":"2018","journal-title":"PLoS Pathog."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb1900","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0038584","article-title":"Small but Crucial: The Novel Small Heat Shock Protein Hsp21 Mediates Stress Adaptation and Virulence in Candida albicans","volume":"7","author":"Mayer","year":"2012","journal-title":"PLoS One"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1905","doi-asserted-by":"crossref","first-page":"3488","DOI":"10.1074\/mcp.M116.061523","article-title":"Comparative Ploidy Proteomics of Candida albicans Biofilms Unraveled the Role of the AHP1 Gene in the Biofilm Persistence Against Amphotericin B*","volume":"15","author":"Truong","year":"2016","journal-title":"Mol. Cell. Proteomics"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb1910","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1099\/jmm.0.015784-0","article-title":"Apoptosis in Candida biofilms exposed to amphotericin B","volume":"59","author":"Al-Dhaheri","year":"2010","journal-title":"J. Med. Microbiol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1915","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0015808","article-title":"Lack of Trehalose Accelerates H2O2-Induced Candida albicans Apoptosis through Regulating Ca2+ Signaling Pathway and Caspase Activity","volume":"6","author":"Lu","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.addr.2025.115740_bb1920","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1016\/j.gde.2017.09.004","article-title":"The rewiring of transcription circuits in evolution","volume":"47","author":"Johnson","year":"2017","journal-title":"Curr. Opin. Genet. Dev."},{"key":"10.1016\/j.addr.2025.115740_bb1925","article-title":"Mitchell AP","volume":"21","author":"Kim","year":"2024","journal-title":"Strain variation in Candida albicans glycolytic gene regulation. mSphere. Published online November"},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb1930","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1000783","article-title":"A phenotypic profile of the Candida albicans regulatory network","volume":"5","author":"Homann","year":"2009","journal-title":"PLoS Genet."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1935","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1002\/eji.201242691","article-title":"Secreted aspartic proteases of C andida albicans activate the NLRP 3 inflammasome","volume":"43","author":"Pietrella","year":"2013","journal-title":"Eur. J. Immunol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1940","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1186\/1752-0509-2-87","article-title":"A quantitative estimation of the global translational activity in logarithmically growing yeast cells","volume":"2","author":"von der Haar","year":"2008","journal-title":"BMC Syst. Biol."},{"issue":"16","key":"10.1016\/j.addr.2025.115740_bb1945","doi-asserted-by":"crossref","first-page":"10901","DOI":"10.1074\/jbc.M808693200","article-title":"The High Osmotic Response and Cell Wall Integrity Pathways Cooperate to Regulate Transcriptional Responses to Zymolyase-induced Cell Wall Stress in Saccharomyces cerevisiae*","volume":"284","author":"Garc\u00eda","year":"2009","journal-title":"J. Biol. Chem."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb1950","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.2004050","article-title":"Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress","volume":"15","author":"Gasch","year":"2017","journal-title":"PLoS Biol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1955","doi-asserted-by":"crossref","first-page":"683","DOI":"10.1038\/s41564-018-0346-9","article-title":"Sensitive high-throughput single-cell RNA-seq reveals within-clonal transcript correlations in yeast populations","volume":"4","author":"Nadal-Ribelles","year":"2019","journal-title":"Nat. Microbiol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb1960","doi-asserted-by":"crossref","first-page":"480","DOI":"10.1038\/s41564-018-0330-4","article-title":"Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation","volume":"4","author":"Saint","year":"2019","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb1965","series-title":"Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments. Barkai N, Weigel D, eds. eLife","author":"Jackson","year":"2020"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1970","first-page":"1","article-title":"A yeast-optimized single-cell transcriptomics platform elucidates how mycophenolic acid and guanine alter global mRNA levels","volume":"4","author":"Urbonaite","year":"2021","journal-title":"Commun Biol."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb1975","doi-asserted-by":"crossref","DOI":"10.1111\/acel.13712","article-title":"Single-cell RNA-seq reveals early heterogeneity during aging in yeast","volume":"21","author":"Wang","year":"2022","journal-title":"Aging Cell"},{"key":"10.1016\/j.addr.2025.115740_bb1980","series-title":"Yeast Functional Genomics: Methods and Protocols","article-title":"Single-Cell RNA Sequencing in Yeast Using the 10\u00d7 Genomics Chromium Device","author":"Vermeersch","year":"2022"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb1985","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1186\/s12864-023-09184-w","article-title":"Transcriptomic changes in single yeast cells under various stress conditions","volume":"24","author":"Su","year":"2023","journal-title":"BMC Genomics"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb1990","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1002\/yea.3927","article-title":"An ultra high-throughput, massively multiplexable, single-cell RNA-seq platform in yeasts","volume":"41","author":"Brettner","year":"2024","journal-title":"Yeast"},{"issue":"2024","key":"10.1016\/j.addr.2025.115740_bb1995","volume":"8","author":"Boocock","year":"2023","journal-title":"Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2000","doi-asserted-by":"crossref","first-page":"158","DOI":"10.1002\/yea.3934","article-title":"The rise of single-cell transcriptomics in yeast","volume":"41","author":"Nadal-Ribelles","year":"2024","journal-title":"Yeast"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2005","doi-asserted-by":"crossref","first-page":"1202","DOI":"10.1016\/j.cell.2015.05.002","article-title":"Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets","volume":"161","author":"Macosko","year":"2015","journal-title":"Cell"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2010","doi-asserted-by":"crossref","first-page":"30","DOI":"10.3390\/vaccines10010030","article-title":"mDrop-Seq: Massively Parallel Single-Cell RNA-Seq of Saccharomyces cerevisiae and Candida albicans","volume":"10","author":"Dohn","year":"2021","journal-title":"Vaccines (Basel)."},{"key":"10.1016\/j.addr.2025.115740_bb2015","series-title":"Candida albicans exhibits heterogeneous and adaptive cytoprotective responses to antifungal compounds. Rokas A, Barkai N, Shore D, eds. eLife","author":"Dumeaux","year":"2023"},{"key":"10.1016\/j.addr.2025.115740_bb2020","article-title":"Imaging and Quantification of mRNA Molecules at Single-Cell Resolution in the Human Fungal Pathogen Candida albicans","volume":"6(4):10.1128\/msphere.00411-21","author":"Moreno-Vel\u00e1squez","year":"2021","journal-title":"mSphere"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2025","doi-asserted-by":"crossref","first-page":"e00282","DOI":"10.1128\/msphere.00282-24","article-title":"An approach to analyze spatiotemporal patterns of gene expression at single-cell resolution in Candida albicans-infected mouse tongues","volume":"9","author":"Lindemann-Perez","year":"2024","journal-title":"mSphere"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb2030","doi-asserted-by":"crossref","first-page":"2119","DOI":"10.1021\/acssynbio.0c00199","article-title":"Yeast Intracellular Staining (yICS): Enabling High-Throughput, Quantitative Detection of Intracellular Proteins via Flow Cytometry for Pathway Engineering","volume":"9","author":"Hill","year":"2020","journal-title":"ACS Synth. Biol."},{"issue":"7489","key":"10.1016\/j.addr.2025.115740_bb2035","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1038\/nature12904","article-title":"Genetics of single-cell protein abundance variation in large yeast populations","volume":"506","author":"Albert","year":"2014","journal-title":"Nature"},{"key":"10.1016\/j.addr.2025.115740_bb2040","series-title":"Global Cheesemaking Technology\u2014Cheese Quality and Characteristics","article-title":"The History of Cheese","author":"Kindstedt","year":"2018"},{"key":"10.1016\/j.addr.2025.115740_bb2045","article-title":"Fecal medicines used in traditional medical system of China: a systematic review of their names, original species, traditional uses, and modern investigations","volume":"14(1):31","author":"Du","year":"2019","journal-title":"Chin. Med."},{"issue":"02","key":"10.1016\/j.addr.2025.115740_bb2050","doi-asserted-by":"crossref","first-page":"129","DOI":"10.3855\/jidc.3573","article-title":"Bacteriophage therapy: a potential solution for the antibiotic resistance crisis","volume":"8","author":"Golkar","year":"2014","journal-title":"The Journal of Infection in Developing Countries."},{"key":"10.1016\/j.addr.2025.115740_bb2055","article-title":"On an invisible microbe antagonistic to dysentery bacilli","author":"d\u2019Herelle","year":"1917","journal-title":"CR Acad Sci Paris. Published online"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2060","first-page":"5","article-title":"Synthetic Biology and Engineered Live Biotherapeutics: Toward Increasing System Complexity","volume":"7","author":"Ozdemir","year":"2018","journal-title":"cels"},{"key":"10.1016\/j.addr.2025.115740_bb2065","doi-asserted-by":"crossref","DOI":"10.1016\/j.biomaterials.2025.123342","article-title":"Living therapeutics: Precision diagnosis and therapy with engineered bacteria","volume":"321","author":"Xie","year":"2025","journal-title":"Biomaterials"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2070","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1016\/j.tibtech.2018.09.005","article-title":"Engineering Microbial Living Therapeutics: The Synthetic Biology Toolbox","volume":"37","author":"Pedrolli","year":"2019","journal-title":"Trends Biotechnol."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb2075","doi-asserted-by":"crossref","first-page":"3184","DOI":"10.1021\/acssynbio.0c00444","article-title":"Living Therapeutics: The Next Frontier of Precision Medicine","volume":"9","author":"Kelly","year":"2020","journal-title":"ACS Synth. Biol."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb2080","doi-asserted-by":"crossref","first-page":"910","DOI":"10.1038\/s41551-022-00871-9","article-title":"An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis","volume":"6","author":"Cubillos-Ruiz","year":"2022","journal-title":"Nature biomedical engineering."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2085","doi-asserted-by":"crossref","first-page":"300","DOI":"10.1080\/1040841X.2023.2190392","article-title":"Engineered probiotics as live biotherapeutics for diagnosis and treatment of human diseases","volume":"50","author":"Meng","year":"2024","journal-title":"Crit. Rev. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2090","doi-asserted-by":"crossref","first-page":"371","DOI":"10.3390\/antibiotics14040371","article-title":"The Impact of Antibiotic Therapy on Intestinal Microbiota: Dysbiosis, Antibiotic Resistance, and Restoration Strategies","volume":"14","author":"Cusumano","year":"2025","journal-title":"Antibiotics"},{"issue":"25","key":"10.1016\/j.addr.2025.115740_bb2095","doi-asserted-by":"crossref","first-page":"11260","DOI":"10.1073\/pnas.1001294107","article-title":"Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model","volume":"107","author":"Duan","year":"2010","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"30","key":"10.1016\/j.addr.2025.115740_bb2100","doi-asserted-by":"crossref","first-page":"8249","DOI":"10.1080\/10408398.2021.1926905","article-title":"Application of probiotics in candidiasis management","volume":"62","author":"Andrade","year":"2022","journal-title":"Crit. Rev. Food Sci. Nutr."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2105","doi-asserted-by":"crossref","DOI":"10.1002\/imt2.202","article-title":"The feasibility of using pathobiome strains as live biotherapeutic products for human use","volume":"3","author":"Jin","year":"2024","journal-title":"Imeta"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2110","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1021\/sb400055h","article-title":"Visualization of Evolutionary Stability Dynamics and Competitive Fitness of Escherichia coli Engineered with Randomized Multigene Circuits","volume":"2","author":"Sleight","year":"2013","journal-title":"ACS Synth. Biol."},{"issue":"0","key":"10.1016\/j.addr.2025.115740_bb2115","article-title":"Living drugs: A wonderful evolution for therapeutic applications","volume":"0","author":"Chintalapati","year":"2025","journal-title":"Cell Biomaterials"},{"key":"10.1016\/j.addr.2025.115740_bb2120","article-title":"Two-step enhanced cancer immunotherapy with engineered Salmonella typhimurium secreting heterologous flagellin","volume":"9(376):eaak9537","author":"Zheng","year":"2017","journal-title":"Sci. Transl. Med."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2125","doi-asserted-by":"crossref","first-page":"60","DOI":"10.3390\/ph9040060","article-title":"pMPES: A Modular Peptide Expression System for the Delivery of Antimicrobial Peptides to the Site of Gastrointestinal Infections Using Probiotics","volume":"9","author":"Geldart","year":"2016","journal-title":"Pharmaceuticals"},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb2130","doi-asserted-by":"crossref","first-page":"715","DOI":"10.1021\/sb4000417","article-title":"Genetically Programmable Pathogen Sense and Destroy","volume":"2","author":"Gupta","year":"2013","journal-title":"ACS Synth. Biol."},{"issue":"7614","key":"10.1016\/j.addr.2025.115740_bb2135","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1038\/nature18930","article-title":"Synchronized cycles of bacterial lysis for in vivo delivery","volume":"536","author":"Din","year":"2016","journal-title":"Nature"},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb2140","doi-asserted-by":"crossref","first-page":"1057","DOI":"10.1038\/s41591-019-0498-z","article-title":"Programmable bacteria induce durable tumor regression and systemic antitumor immunity","volume":"25","author":"Chowdhury","year":"2019","journal-title":"Nat. Med."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb2145","doi-asserted-by":"crossref","first-page":"5995","DOI":"10.1128\/jb.171.11.5995-6004.1989","article-title":"Characterization of the oxygen-dependent promoter of the Vitreoscilla hemoglobin gene in Escherichia coli","volume":"171","author":"Khosla","year":"1989","journal-title":"J. Bacteriol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2150","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1002\/bit.260470210","article-title":"Characterization of a pH-inducible promoter system for high-level expression of recombinant proteins in Escherichia coli","volume":"47","author":"Chou","year":"1995","journal-title":"Biotechnol. Bioeng."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2155","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1128\/JB.188.2.409-423.2006","article-title":"Characterization and Use of Catabolite-Repressed Promoters from Gluconate Genes in Corynebacterium glutamicum","volume":"188","author":"Letek","year":"2006","journal-title":"J. Bacteriol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2160","doi-asserted-by":"crossref","first-page":"923","DOI":"10.15252\/msb.20167416","article-title":"Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation","volume":"13","author":"Daeffler","year":"2017","journal-title":"Mol. Syst. Biol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2165","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1007\/s00784-024-05651-0","article-title":"Acquired enamel pellicle and biofilm engineering with a combination of acid-resistant proteins (CaneCPI-5, StN15, and Hemoglobin) for enhanced protection against dental caries - in vivo and in vitro investigations","volume":"28","author":"Araujo","year":"2024","journal-title":"Clin. Oral Investig."},{"issue":"7705","key":"10.1016\/j.addr.2025.115740_bb2170","doi-asserted-by":"crossref","first-page":"434","DOI":"10.1038\/s41586-018-0092-4","article-title":"An exclusive metabolic niche enables strain engraftment in the gut microbiota","volume":"557","author":"Shepherd","year":"2018","journal-title":"Nature"},{"key":"10.1016\/j.addr.2025.115740_bb2175","article-title":"Expanding natural transformation to improve beneficial lactic acid bacteria","volume":"46(4):fuac014","author":"Di Giacomo","year":"2022","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.addr.2025.115740_bb2180","doi-asserted-by":"crossref","DOI":"10.1016\/j.mimet.2020.105944","article-title":"Optimization of electrotransformation (ETF) conditions in lactic acid bacteria (LAB)","volume":"174","author":"Wang","year":"2020","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.addr.2025.115740_bb2185","article-title":"Broad range shuttle vector construction and promoter evaluation for the use of Lactobacillus plantarum WCFS1 as a microbial engineering platform","volume":"4(1):ysz012","author":"Spangler","year":"2019","journal-title":"Synth Biol (Oxf)."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2190","doi-asserted-by":"crossref","first-page":"1738","DOI":"10.1038\/s41467-020-15508-1","article-title":"Developing a new class of engineered live bacterial therapeutics to treat human diseases","volume":"11","author":"Charbonneau","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.addr.2025.115740_bb2195","article-title":"Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota","author":"Mimee","year":"2015","journal-title":"cels"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2200","doi-asserted-by":"crossref","first-page":"547","DOI":"10.1016\/j.cell.2017.03.045","article-title":"Engineered Regulatory Systems Modulate Gene Expression of Human Commensals in the Gut","volume":"169","author":"Lim","year":"2017","journal-title":"Cell"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2205","doi-asserted-by":"crossref","first-page":"9741","DOI":"10.1038\/s41467-024-53845-7","article-title":"A molecular toolkit for heterologous protein secretion across Bacteroides species","volume":"15","author":"Yeh","year":"2024","journal-title":"Nat. Commun."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2210","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1111\/1751-7915.13265","article-title":"Effect of cryopreservation and lyophilization on viability and growth of strict anaerobic human gut microbes","volume":"11","author":"Bircher","year":"2018","journal-title":"Microb. Biotechnol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2215","doi-asserted-by":"crossref","first-page":"15028","DOI":"10.1038\/ncomms15028","article-title":"Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models","volume":"8","author":"Hwang","year":"2017","journal-title":"Nat. Commun."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2220","doi-asserted-by":"crossref","first-page":"36","DOI":"10.3390\/biomedicines7020036","article-title":"Salmonella-Based Targeted Cancer Therapy: Updates on A Promising and Innovative Tumor Immunotherapeutic Strategy","volume":"7","author":"Pangilinan","year":"2019","journal-title":"Biomedicines"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2225","doi-asserted-by":"crossref","first-page":"15375","DOI":"10.1038\/s41598-025-00457-w","article-title":"Insights into urinary catheter colonisation and polymicrobial biofilms of Candida- bacteria under flow condition","volume":"15","author":"Joshi","year":"2025","journal-title":"Sci. Rep."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2230","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3002119","article-title":"Translating phage therapy into the clinic: Recent accomplishments but continuing challenges","volume":"21","author":"Petrovic Fabijan","year":"2023","journal-title":"PLoS Biol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2235","doi-asserted-by":"crossref","first-page":"608","DOI":"10.1016\/j.mib.2009.09.008","article-title":"Self-signalling and self-fusion in filamentous fungi","volume":"12","author":"Read","year":"2009","journal-title":"Curr. Opin. Microbiol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2240","doi-asserted-by":"crossref","first-page":"1509","DOI":"10.1128\/jb.94.5.1509-1515.1967","article-title":"Effect of some proteins on the yeast cell membrane","volume":"94","author":"Yphantis","year":"1967","journal-title":"J. Bacteriol."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb2245","doi-asserted-by":"crossref","first-page":"4293","DOI":"10.1073\/pnas.84.12.4293","article-title":"Viruses in fungi: infection of yeast with the K1 and K2 killer viruses","volume":"84","author":"El-Sherbeini","year":"1987","journal-title":"Proc. Natl. Acad. Sci."},{"key":"10.1016\/j.addr.2025.115740_bb2250","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1007\/s00705-005-0662-2","article-title":"Infection of Rosellinia necatrix with purified viral particles of a member of Partitiviridae RnPV1-W8","volume":"151","author":"Sasaki","year":"2006","journal-title":"Arch. Virol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2255","doi-asserted-by":"crossref","first-page":"892","DOI":"10.1128\/JVI.78.2.892-898.2004","article-title":"A reovirus of the fungus Cryphonectria parasitica that is infectious as particles and related to the Coltivirus genus of animal pathogens","volume":"78","author":"Hillman","year":"2004","journal-title":"J. Virol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2260","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1128\/jb.152.1.502-505.1982","article-title":"Virus-like particles and lytic plaque formation in lawns of Candida albicans","volume":"152","author":"Nash 3rd","year":"1982","journal-title":"J. Bacteriol."},{"issue":"45","key":"10.1016\/j.addr.2025.115740_bb2265","doi-asserted-by":"crossref","first-page":"17526","DOI":"10.1073\/pnas.0806724105","article-title":"Infectious myonecrosis virus has a totivirus-like, 120-subunit capsid, but with fiber complexes at the fivefold axes","volume":"105","author":"Tang","year":"2008","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"27","key":"10.1016\/j.addr.2025.115740_bb2270","doi-asserted-by":"crossref","first-page":"11197","DOI":"10.1073\/pnas.0704624104","article-title":"Dispersing biofilms with engineered enzymatic bacteriophage","volume":"104","author":"Lu","year":"2007","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb2275","doi-asserted-by":"crossref","first-page":"1728","DOI":"10.1038\/s41591-019-0626-9","article-title":"Genomic and epidemiological evidence of bacterial transmission from probiotic capsule to blood in ICU patients","volume":"25","author":"Yelin","year":"2019","journal-title":"Nat. Med."},{"key":"10.1016\/j.addr.2025.115740_bb2280","first-page":"3","article-title":"Navigating regulatory and analytical challenges in live biotherapeutic product development and manufacturing","author":"Microbiome Therapeutics Innovation Group","year":"2024","journal-title":"Front Microbiomes."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2285","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1056\/NEJMoa1205037","article-title":"Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile","volume":"368","author":"Van","year":"2013","journal-title":"N. Engl. J. Med."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2290","doi-asserted-by":"crossref","first-page":"1755","DOI":"10.3390\/microorganisms12091755","article-title":"The Role of Fecal Microbiota Transplantation in IBD","volume":"12","author":"Fanizzi","year":"2024","journal-title":"Microorganisms"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2295","doi-asserted-by":"crossref","first-page":"861","DOI":"10.3390\/diagnostics14090861","article-title":"The Importance of Microbiota and Fecal Microbiota Transplantation in Pancreatic Disorders","volume":"14","author":"Boicean","year":"2024","journal-title":"Diagnostics"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2300","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1111\/apt.16148","article-title":"Systematic review: the global incidence of faecal microbiota transplantation-related adverse events from 2000 to 2020","volume":"53","author":"Marcella","year":"2021","journal-title":"Aliment. Pharmacol. Ther."},{"key":"10.1016\/j.addr.2025.115740_bb2305","article-title":"Advancements in Novel Live Biotherapeutic Products for Clostridioides difficile Infection Prevention","volume":"77(Supplement_6):S447-S454","author":"Lavoie","year":"2023","journal-title":"Clin. Infect. Dis."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2310","doi-asserted-by":"crossref","first-page":"1103","DOI":"10.1007\/s10096-023-04644-3","article-title":"High carriage rate of extended-spectrum \u03b2-lactamase Enterobacterales and diarrheagenic Escherichia coli in healthy donor screening for fecal microbiota transplantation","volume":"42","author":"Chuang","year":"2023","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb2315","doi-asserted-by":"crossref","first-page":"4069","DOI":"10.1007\/s00253-023-12558-5","article-title":"Application of MALDI-TOF MS for enumerating bacterial constituents of defined consortia","volume":"107","author":"Coryell","year":"2023","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.addr.2025.115740_bb2320","first-page":"10","article-title":"How to Count Our Microbes? The Effect of Different Quantitative Microbiome Profiling Approaches","author":"Galazzo","year":"2020","journal-title":"Front. Cell. Infect. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb2325","doi-asserted-by":"crossref","DOI":"10.1016\/j.copbio.2022.102801","article-title":"Drugging the microbiome and bacterial live biotherapeutic consortium production","volume":"78","author":"McChalicher","year":"2022","journal-title":"Curr. Opin. Biotechnol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2330","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1004986","article-title":"Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities","volume":"12","author":"Germerodt","year":"2016","journal-title":"PLoS Comput. Biol."},{"issue":"7537","key":"10.1016\/j.addr.2025.115740_bb2335","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1038\/nature14121","article-title":"Biocontainment of genetically modified organisms by synthetic protein design","volume":"518","author":"Mandell","year":"2015","journal-title":"Nature"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2340","doi-asserted-by":"crossref","first-page":"82","DOI":"10.1038\/nchembio.1979","article-title":"\u201cDeadman\u201d and \u201cPasscode\u201d microbial kill switches for bacterial containment","volume":"12","author":"Chan","year":"2016","journal-title":"Nat. Chem. Biol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2345","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1038\/nchembio.2233","article-title":"Tunable thermal bioswitches for in vivo control of microbial therapeutics","volume":"13","author":"Piraner","year":"2017","journal-title":"Nat. Chem. Biol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2350","doi-asserted-by":"crossref","first-page":"200","DOI":"10.1111\/cts.12528","article-title":"Translational Development of Microbiome-Based Therapeutics: Kinetics of E. coli Nissle and Engineered Strains in Humans and Nonhuman Primates","volume":"11","author":"Kurtz","year":"2018","journal-title":"Clinical and Translational Science."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2355","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1046\/j.1365-2036.2000.00763.x","article-title":"Pharmacokinetics of Lactobacillus plantarum NCIMB 8826, Lactobacillus fermentum KLD, and Lactococcus lactis MG 1363 in the human gastrointestinal tract","volume":"14","author":"Vesa","year":"2000","journal-title":"Aliment. Pharmacol. Ther."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2360","doi-asserted-by":"crossref","first-page":"e13","DOI":"10.1016\/S2666-5247(23)00227-6","article-title":"Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study","volume":"5","author":"Yang","year":"2024","journal-title":"The Lancet Microbe."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2365","doi-asserted-by":"crossref","first-page":"1269","DOI":"10.1073\/pnas.1113246109","article-title":"Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae","volume":"109","author":"Stecher","year":"2012","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2370","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1021\/sb500234s","article-title":"GeneGuard: A Modular Plasmid System Designed for Biosafety","volume":"4","author":"Wright","year":"2015","journal-title":"ACS Synth. Biol."},{"key":"10.1016\/j.addr.2025.115740_bb2375","article-title":"Salamzade R, Sandstrom S, et al","volume":"4","author":"Nguyen","year":"2024","journal-title":"Large-scale investigation for antimicrobial activity reveals novel defensive species across the healthy skin microbiome. Microbiology. Preprint posted online November"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2380","doi-asserted-by":"crossref","first-page":"654","DOI":"10.1128\/iai.49.3.654-663.1985","article-title":"Ecology of Candida albicans gut colonization: inhibition of Candida adhesion, colonization, and dissemination from the gastrointestinal tract by bacterial antagonism","volume":"49","author":"Kennedy","year":"1985","journal-title":"Infect. Immun."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2385","doi-asserted-by":"crossref","DOI":"10.1093\/femspd\/fty038","article-title":"Secondary bile acids inhibit Candida albicans growth and morphogenesis","volume":"76","author":"Guinan","year":"2018","journal-title":"Pathogens and disease."},{"issue":"18","key":"10.1016\/j.addr.2025.115740_bb2390","doi-asserted-by":"crossref","DOI":"10.1093\/femsle\/fny196","article-title":"Antibiotic-induced alterations in taurocholic acid levels promote gastrointestinal colonization of Candida albicans","volume":"365","author":"Guinan","year":"2018","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.addr.2025.115740_bb2395","series-title":"Membership and Behavior of Ultra-Low-Diversity Pathogen Communities Present in the Gut of Humans during Prolonged Critical Illness. Clemente J, Dominguez Bello MG, eds. mBio","author":"Zaborin","year":"2014"},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb2400","doi-asserted-by":"crossref","first-page":"808","DOI":"10.1038\/nm.3871","article-title":"Activation of HIF-1\u03b1 and LL-37 by commensal bacteria inhibits Candida albicans colonization","volume":"21","author":"Fan","year":"2015","journal-title":"Nat. Med."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2405","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1111\/1348-0421.12680","article-title":"Fecal microbiota transplantation prevents Candida albicans from colonizing the gastrointestinal tract","volume":"63","author":"Matsuo","year":"2019","journal-title":"Microbiol. Immunol."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb2410","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1006699","article-title":"The yeast form of the fungus Candida albicans promotes persistence in the gut of gnotobiotic mice","volume":"13","author":"B\u00f6hm","year":"2017","journal-title":"PLoS Pathog."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2415","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1111\/jam.14511","article-title":"Action mechanisms of probiotics on Candida spp. and candidiasis prevention: an update","volume":"129","author":"Ribeiro","year":"2020","journal-title":"J. Appl. Microbiol."},{"issue":"24","key":"10.1016\/j.addr.2025.115740_bb2420","doi-asserted-by":"crossref","first-page":"7710","DOI":"10.1128\/AEM.01244-09","article-title":"2-Amino-3-(Oxirane-2,3-Dicarboxamido)-Propanoyl-Valine, an Effective Peptide Antibiotic from the Epiphyte Pantoea agglomerans 48b\/90","volume":"75","author":"Sammer","year":"2009","journal-title":"Appl. Environ. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2425","doi-asserted-by":"crossref","first-page":"1039","DOI":"10.1021\/acs.jnatprod.1c01173","article-title":"Discovery and Biosynthesis of Antimicrobial Phenethylamine Alkaloids from the Marine Flavobacterium Tenacibaculum discolor sv11","volume":"85","author":"Wang","year":"2022","journal-title":"J. Nat. Prod."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2430","doi-asserted-by":"crossref","first-page":"1238","DOI":"10.3390\/antibiotics11091238","article-title":"Biocontrol of Candida albicans by Antagonistic Microorganisms and Bioactive Compounds","volume":"11","author":"Li","year":"2022","journal-title":"Antibiotics"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb2435","doi-asserted-by":"crossref","first-page":"6703","DOI":"10.1128\/AAC.01144-16","article-title":"Effect of antifungal treatment in a diet-based murine model of disseminated candidiasis acquired via the gastrointestinal tract","volume":"60","author":"Kadosh","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.addr.2025.115740_bb2440","series-title":"Manipulation of Host Diet To Reduce Gastrointestinal Colonization by the Opportunistic Pathogen Candida albicans. Mitchell AP, ed. mSphere","author":"Gunsalus","year":"2016"},{"key":"10.1016\/j.addr.2025.115740_bb2445","article-title":"Anti-Candida activity of beneficial vaginal lactobacilli in in vitro assays and in a murine experimental model","volume":"19(2):foz008","author":"De Gregorio","year":"2019","journal-title":"FEMS Yeast Res."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2450","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1186\/s12934-020-01464-4","article-title":"Vaginal microbiota and the potential of Lactobacillus derivatives in maintaining vaginal health","volume":"19","author":"Chee","year":"2020","journal-title":"Microb. Cell Factories"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2455","doi-asserted-by":"crossref","first-page":"1143","DOI":"10.1093\/cid\/ciw038","article-title":"Probiotics as Antifungals in Mucosal Candidiasis","volume":"62","author":"Matsubara","year":"2016","journal-title":"Clin. Infect. Dis."},{"issue":"15","key":"10.1016\/j.addr.2025.115740_bb2460","doi-asserted-by":"crossref","first-page":"1790","DOI":"10.3109\/14767058.2014.968842","article-title":"Comparison of Lactobacillus reuteri and nystatin prophylaxis on Candida colonization and infection in very low birth weight infants","volume":"28","author":"Oncel","year":"2015","journal-title":"J. Matern. Fetal Neonatal Med."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2465","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1007\/s12602-014-9176-0","article-title":"Local Probiotic Therapy for Vaginal Candida albicans Infections","volume":"7","author":"Kovachev","year":"2015","journal-title":"Probiotics & Antimicro Prot."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2470","doi-asserted-by":"crossref","first-page":"2451165","DOI":"10.1080\/21505594.2025.2451165","article-title":"Lactic acid in the vaginal milieu modulates the Candida-host interaction","volume":"16","author":"Rosati","year":"2025","journal-title":"Virulence"},{"key":"10.1016\/j.addr.2025.115740_bb2475","first-page":"13","article-title":"Insights From the Lactobacillus johnsonii Genome Suggest the Production of Metabolites With Antibiofilm Activity Against the Pathobiont Candida albicans","author":"Vazquez-Munoz","year":"2022","journal-title":"Front. Microbiol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2480","doi-asserted-by":"crossref","first-page":"146","DOI":"10.11598\/btb.2024.31.2.1868","article-title":"The potential of lactic acid bacteria, isolated from several sources, to inhibit the growth of candida albicans ATCC10231","volume":"31","author":"Ramona","year":"2024","journal-title":"Biotropia"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2485","doi-asserted-by":"crossref","first-page":"20651","DOI":"10.1038\/s41598-025-07549-7","article-title":"Synergistic antimicrobial and probiotic activity of lactic acid bacteria isolated from Tarkhineh against Candida albicans","volume":"15","author":"Kiani","year":"2025","journal-title":"Sci. Rep."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2490","doi-asserted-by":"crossref","first-page":"9365","DOI":"10.1038\/s41598-024-59869-9","article-title":"Multifactorial inhibition of Candida albicans by combinations of lactobacilli and probiotic Saccharomyces cerevisiae CNCM I-3856","volume":"14","author":"Spacova","year":"2024","journal-title":"Sci. Rep."},{"key":"10.1016\/j.addr.2025.115740_bb2495","article-title":"The biosurfactants iturin, lichenysin and surfactin, from vaginally isolated lactobacilli, prevent biofilm formation by pathogenic Candida","volume":"367(15):fnaa126","author":"Nelson","year":"2020","journal-title":"FEMS Microbiol. Lett."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2500","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1186\/s12934-020-01390-5","article-title":"Biosurfactant from vaginal Lactobacillus crispatus BC1 as a promising agent to interfere with Candida adhesion","volume":"19","author":"De Gregorio","year":"2020","journal-title":"Microb. Cell Factories"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2505","doi-asserted-by":"crossref","first-page":"215","DOI":"10.48022\/mbl.2501.01001","article-title":"Lactic Acid Bacterial Inhibitory Activity against Candidiasis Causing Candida albicans and Elucidation of Their Active Compounds","volume":"53","author":"Selviani","year":"2025","journal-title":"Microbiology and Biotechnology Letters."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2510","doi-asserted-by":"crossref","first-page":"1647","DOI":"10.3390\/app15031647","article-title":"Lactic Acid Bacteria from Kiwi: Antifungal and Biofilm-Inhibitory Activities Against Candida albicans","volume":"15","author":"Jin","year":"2025","journal-title":"Appl. Sci."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2515","doi-asserted-by":"crossref","first-page":"1753","DOI":"10.1111\/1751-7915.12799","article-title":"Interplay between Lactobacillus rhamnosus GG and Candida and the involvement of exopolysaccharides","volume":"10","author":"Allonsius","year":"2017","journal-title":"Microb. Biotechnol."},{"key":"10.1016\/j.addr.2025.115740_bb2520","article-title":"Wp\u0142yw p\u0119cherzyk\u00f3w zewn\u0105trzkom\u00f3rkowych wydzielanych przez bakterie z rodzaju Bifidobacterium na proces formowania biofilmu przez grzyby Candida albicans","volume":"24","author":"Mica\u0142","year":"2025","journal-title":"Candida tropicalis i Candida parapsilosis. Published online June"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2525","doi-asserted-by":"crossref","first-page":"2900","DOI":"10.1038\/s41598-019-39625-0","article-title":"Inhibition of Candida albicans morphogenesis by chitinase from Lactobacillus rhamnosus GG","volume":"9","author":"Allonsius","year":"2019","journal-title":"Sci. Rep."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2530","doi-asserted-by":"crossref","first-page":"11510","DOI":"10.1038\/s41598-020-68214-9","article-title":"Bacteroides thetaiotaomicron and Lactobacillus johnsonii modulate intestinal inflammation and eliminate fungi via enzymatic hydrolysis of the fungal cell wall","volume":"10","author":"Charlet","year":"2020","journal-title":"Sci. Rep."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2535","doi-asserted-by":"crossref","first-page":"6440","DOI":"10.1038\/s41467-024-50740-z","article-title":"Addendum: A small molecule produced by Lactobacillus species blocks Candida albicans filamentation by inhibiting a DYRK1-family kinase","volume":"15","author":"MacAlpine","year":"2024","journal-title":"Nat. Commun."},{"issue":"17","key":"10.1016\/j.addr.2025.115740_bb2540","doi-asserted-by":"crossref","first-page":"4507","DOI":"10.1073\/pnas.1620432114","article-title":"Enterococcus faecalis bacteriocin EntV inhibits hyphal morphogenesis, biofilm formation, and virulence of Candida albicans","volume":"114","author":"Graham","year":"2017","journal-title":"Proc. Natl. Acad. Sci."},{"key":"10.1016\/j.addr.2025.115740_bb2545","article-title":"Antifungal Activity of the Enterococcus faecalis Peptide EntV Requires Protease Cleavage and Disulfide Bond Formation","volume":"10(4):10.1128\/mbio.01334-19","author":"Brown","year":"2019","journal-title":"mBio"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2550","doi-asserted-by":"crossref","first-page":"506","DOI":"10.1111\/mmi.13475","article-title":"Lactic acid bacteria differentially regulate filamentation in two heritable cell types of the human fungal pathogen Candida albicans","volume":"102","author":"Liang","year":"2016","journal-title":"Mol. Microbiol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2555","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1111\/apm.13365","article-title":"Inhibiting pathogenicity of vaginal Candida albicans by lactic acid bacteria and MS analysis of their extracellular compounds","volume":"132","author":"Das","year":"2024","journal-title":"APMIS"},{"key":"10.1016\/j.addr.2025.115740_bb2560","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1016\/j.micpath.2018.02.019","article-title":"Lactobacillus paracasei 28.4 reduces in vitro hyphae formation of Candida albicans and prevents the filamentation in an experimental model of Caenorhabditis elegans","volume":"117","author":"de Barros","year":"2018","journal-title":"Microb. Pathog."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb2565","doi-asserted-by":"crossref","first-page":"6206","DOI":"10.1128\/IAI.72.11.6206-6210.2004","article-title":"Regulation of Candida albicans morphogenesis by fatty acid metabolites","volume":"72","author":"Noverr","year":"2004","journal-title":"Infect. Immun."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb2570","doi-asserted-by":"crossref","first-page":"2573","DOI":"10.1093\/jac\/dkr358","article-title":"Sodium butyrate inhibits pathogenic yeast growth and enhances the functions of macrophages","volume":"66","author":"Nguyen","year":"2011","journal-title":"J. Antimicrob. Chemother."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2575","doi-asserted-by":"crossref","first-page":"34","DOI":"10.3390\/microorganisms8010034","article-title":"Curative Treatment of Candidiasis by the Live Biotherapeutic Microorganism Lactobacillus rhamnosus Lcr35\u00ae in the Invertebrate Model Caenorhabditis elegans: First Mechanistic Insights","volume":"8","author":"Poupet","year":"2019","journal-title":"Microorganisms"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2580","first-page":"265","article-title":"Biotherapeutic effects of Bifidobacterium spp. on orogastric and systemic candidiasis in immunodeficient mice","volume":"15","author":"Wagner","year":"1998","journal-title":"Rev. Iberoam. Micol."},{"key":"10.1016\/j.addr.2025.115740_bb2585","article-title":"Human gut bifidobacteria inhibit the growth of the opportunistic fungal pathogen Candida albicans","volume":"98(10):fiac095","author":"Ricci","year":"2022","journal-title":"FEMS Microbiol. Ecol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2590","doi-asserted-by":"crossref","first-page":"2291164","DOI":"10.1080\/19490976.2023.2291164","article-title":"Bifidobacterium mechanisms of immune modulation and tolerance","volume":"15","author":"Gavzy","year":"2023","journal-title":"Gut Microbes"},{"key":"10.1016\/j.addr.2025.115740_bb2595","article-title":"Disarming Fungal Pathogens: Bacillus safensis Inhibits Virulence Factor Production and Biofilm Formation by Cryptococcus neoformans and Candida albicans","volume":"8(5):10.1128\/mbio.01537-17","author":"Mayer","year":"2017","journal-title":"mBio"},{"key":"10.1016\/j.addr.2025.115740_bb2600","doi-asserted-by":"crossref","first-page":"2509","DOI":"10.2147\/IDR.S250278","article-title":"Antimicrobial Peptide AMP-17 Affects Candida albicans by Disrupting Its Cell Wall and Cell Membrane Integrity","volume":"13","author":"Ma","year":"2020","journal-title":"Infection and Drug Resistance."},{"key":"10.1016\/j.addr.2025.115740_bb2605","article-title":"Disruption of Membrane Integrity by the Bacterium-Derived Antifungal Jagaricin","volume":"63(9):10.1128\/aac.00707-19","author":"Fischer","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"issue":"21","key":"10.1016\/j.addr.2025.115740_bb2610","doi-asserted-by":"crossref","first-page":"8963","DOI":"10.1007\/s00253-019-10117-5","article-title":"C16-Fengycin A affect the growth of Candida albicans by destroying its cell wall and accumulating reactive oxygen species","volume":"103","author":"Liu","year":"2019","journal-title":"Appl. Microbiol. Biotechnol."},{"issue":"19","key":"10.1016\/j.addr.2025.115740_bb2615","doi-asserted-by":"crossref","first-page":"10408","DOI":"10.3390\/ijms251910408","article-title":"Genome-Guided Identification of Surfactin-Producing Bacillus halotolerans AQ11M9 with Anti-Candida auris Potential","volume":"25","author":"Borgio","year":"2024","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.addr.2025.115740_bb2620","doi-asserted-by":"crossref","DOI":"10.1016\/j.bioflm.2025.100294","article-title":"Bacillus-derived lipopeptides inhibit and eradicate Candida tropicalis Biofilms: An in vitro exploration","volume":"10","author":"Madduri","year":"2025","journal-title":"Biofilm"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2625","doi-asserted-by":"crossref","DOI":"10.1016\/j.jgeb.2024.100402","article-title":"Novel domain-structure-containing chitinases A and B of Bacillus velezensis produced by recombinant Escherichia coli cells: Synergism on chitin degradation and their potential in suppressing Candida albicans cell germination","volume":"22","author":"Tran","year":"2024","journal-title":"Journal of Genetic Engineering and Biotechnology."},{"key":"10.1016\/j.addr.2025.115740_bb2630","doi-asserted-by":"crossref","first-page":"11999","DOI":"10.3389\/abp.2024.11999","article-title":"Two promising natural lipopeptides from Bacillus subtilis effectively induced membrane permeabilization in Candida glabrata","volume":"71","author":"Madduri","year":"2024","journal-title":"Acta Biochim. Pol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2635","doi-asserted-by":"crossref","first-page":"252","DOI":"10.14295\/bds.2019.v22i2.1692","article-title":"Effects of Bacillus subtilis on Candida albicans: biofilm formation, filamentation and gene expression","volume":"22","author":"Silva","year":"2019","journal-title":"Brazilian Dental Science."},{"key":"10.1016\/j.addr.2025.115740_bb2640","doi-asserted-by":"crossref","DOI":"10.1016\/j.biopha.2022.113220","article-title":"Physiological and transcriptional profiling of surfactin exerted antifungal effect against Candida albicans","volume":"152","author":"Jakab","year":"2022","journal-title":"Biomed. Pharmacother."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2645","doi-asserted-by":"crossref","first-page":"192","DOI":"10.3934\/bioeng.2018.3.192","article-title":"Inhibition of <em>Candida albicans<\/em> biofilm by lipopeptide AC7 coated medical-grade silicone in combination with farnesol","volume":"5","author":"Ceresa","year":"2018","journal-title":"AIMSBOA"},{"key":"10.1016\/j.addr.2025.115740_bb2650","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1016\/j.micres.2017.11.002","article-title":"5-hydroxymethyl-2-furaldehyde from marine bacterium Bacillus subtilis inhibits biofilm and virulence of Candida albicans","volume":"207","author":"Subramenium","year":"2018","journal-title":"Microbiol. Res."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2655","doi-asserted-by":"crossref","first-page":"809","DOI":"10.1007\/s10482-014-0135-2","article-title":"Lipopeptides from Bacillus strain AR2 inhibits biofilm formation by Candida albicans","volume":"105","author":"Rautela","year":"2014","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb2660","doi-asserted-by":"crossref","first-page":"1634","DOI":"10.3390\/microorganisms12081634","article-title":"Bacillus coagulans LMG S-24828 Impairs Candida Virulence and Protects Vaginal Epithelial Cells against Candida Infection In Vitro","volume":"12","author":"Spaggiari","year":"2024","journal-title":"Microorganisms"},{"key":"10.1016\/j.addr.2025.115740_bb2665","doi-asserted-by":"crossref","DOI":"10.1016\/j.micpath.2021.104988","article-title":"Immunomodulatory mechanism of Bacillus subtilis R0179 in RAW 264.7 cells against Candida albicans challenge","volume":"157","author":"Zhao","year":"2021","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.addr.2025.115740_bb2670","series-title":"Microbiota-derived short-chain fatty acids mediate Candida albicans gastrointestinal colonization resistance. bioRxiv. Published online September 8, 2025","author":"Mishra","year":"2025"},{"key":"10.1016\/j.addr.2025.115740_bb2675","doi-asserted-by":"crossref","DOI":"10.1016\/j.bioflm.2024.100244","article-title":"Mitigating Candida albicans virulence by targeted relay of pulcherriminic acid during antagonistic biofilm formation by Bacillus subtilis","volume":"9","author":"Rajasekharan","year":"2025","journal-title":"Biofilm"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2680","doi-asserted-by":"crossref","first-page":"2015","DOI":"10.1053\/j.gastro.2009.01.072","article-title":"Targeting the human microbiome with antibiotics, probiotics, and prebiotics: gastroenterology enters the metagenomics era","volume":"136","author":"Preidis","year":"2009","journal-title":"Gastroenterology"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb2685","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms11081929","article-title":"Escherichia coli Nissle 1917 Antagonizes Candida albicans Growth and Protects Intestinal Cells from C. albicans-Mediated Damage","volume":"11","author":"Rebai","year":"2023","journal-title":"Microorganisms"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2690","doi-asserted-by":"crossref","DOI":"10.15698\/mic2018.05.631","article-title":"Microbial competition between Escherichia coli and Candida albicans reveals a soluble fungicidal factor","volume":"5","author":"Cabral","year":"2018","journal-title":"Microbial cell."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb2695","doi-asserted-by":"crossref","first-page":"920","DOI":"10.1038\/s41564-018-0191-x","article-title":"The type VI secretion system deploys antifungal effectors against microbial competitors","volume":"3","author":"Trunk","year":"2018","journal-title":"Nat. Microbiol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2700","doi-asserted-by":"crossref","first-page":"e03420","DOI":"10.1128\/mbio.03420-22","article-title":"Acinetobacter baumannii Kills Fungi via a Type VI DNase Effector","volume":"14","author":"Luo","year":"2023","journal-title":"mBio"},{"key":"10.1016\/j.addr.2025.115740_bb2705","first-page":"7","article-title":"Candida albicans and Pseudomonas aeruginosa Interaction, with Focus on the Role of Eicosanoids","author":"Fourie","year":"2016","journal-title":"Front. Physiol."},{"key":"10.1016\/j.addr.2025.115740_bb2710","doi-asserted-by":"crossref","DOI":"10.1016\/j.bioflm.2025.100259","article-title":"A comprehensive analysis of the effect of quorum-sensing molecule 3-oxo-C12-homoserine lactone on Candida auris and Candida albicans","volume":"9","author":"Kov\u00e1cs","year":"2025","journal-title":"Biofilm"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2715","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1111\/j.1365-2036.2007.03442.x","article-title":"Review article: yeast as probiotics \u2013Saccharomyces boulardii","volume":"26","author":"Czerucka","year":"2007","journal-title":"Aliment. Pharmacol. Ther."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2720","doi-asserted-by":"crossref","first-page":"444","DOI":"10.3390\/jof8050444","article-title":"Probiotic Yeast Saccharomyces: Back to Nature to Improve Human Health","volume":"8","author":"Abid","year":"2022","journal-title":"Journal of Fungi."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb2725","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0012050","article-title":"Capric acid secreted by S. boulardii inhibits C. albicans filamentous growth, adhesion and biofilm formation","volume":"5","author":"Murzyn","year":"2010","journal-title":"PLoS One"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2730","doi-asserted-by":"crossref","first-page":"1987","DOI":"10.1007\/s00284-020-02053-9","article-title":"Saccharomyces boulardii CNCM I-745: A Non-bacterial Microorganism Used as Probiotic Agent in Supporting Treatment of Selected Diseases","volume":"77","author":"Ka\u017amierczak-Siedlecka","year":"2020","journal-title":"Curr. Microbiol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2735","doi-asserted-by":"crossref","first-page":"6519","DOI":"10.1038\/s41598-021-86012-9","article-title":"Capric acid secreted by Saccharomyces boulardii influences the susceptibility of Candida albicans to fluconazole and amphotericin B","volume":"11","author":"Suchodolski","year":"2021","journal-title":"Sci. Rep."},{"key":"10.1016\/j.addr.2025.115740_bb2740","doi-asserted-by":"crossref","first-page":"1090501","DOI":"10.3389\/fbioe.2023.1090501","article-title":"Engineering of a probiotic yeast for the production and secretion of medium-chain fatty acids antagonistic to an opportunistic pathogen Candida albicans","volume":"11","author":"Ling","year":"2023","journal-title":"Front Bioeng Biotechnol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2745","doi-asserted-by":"crossref","first-page":"e00780","DOI":"10.1128\/spectrum.00780-23","article-title":"Microbiome Engineering Using Probiotic Yeast: Saccharomyces boulardii and the Secreted Human Lysozyme Lead to Changes in the Gut Microbiome and Metabolome of Mice","volume":"11","author":"Kim","year":"2023","journal-title":"Microbiology Spectrum."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2750","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1021\/acsinfecdis.7b00114","article-title":"Engineered Probiotic for the Inhibition of Salmonella via Tetrathionate-Induced Production of Microcin H47","volume":"4","author":"Palmer","year":"2018","journal-title":"ACS Infect Dis."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2755","doi-asserted-by":"crossref","first-page":"521","DOI":"10.1038\/msb.2011.55","article-title":"Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen","volume":"7","author":"Saeidi","year":"2011","journal-title":"Mol. Syst. Biol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2760","doi-asserted-by":"crossref","first-page":"228","DOI":"10.1021\/sb400077j","article-title":"Reprogramming Microbes to Be Pathogen-Seeking Killers","volume":"3","author":"Hwang","year":"2014","journal-title":"ACS Synth Biol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2765","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1021\/sb500090b","article-title":"Modified Lactic Acid Bacteria Detect and Inhibit Multiresistant Enterococci","volume":"4","author":"Borrero","year":"2015","journal-title":"ACS Synth. Biol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2770","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1111\/cmi.12495","article-title":"Candida albicans is able to use M cells as a portal of entry across the intestinal barrier in vitro: C. albicans interactions with M cells","volume":"18","author":"Albac","year":"2016","journal-title":"Cell. Microbiol."},{"issue":"20","key":"10.1016\/j.addr.2025.115740_bb2775","doi-asserted-by":"crossref","first-page":"2411","DOI":"10.1016\/j.cub.2014.08.057","article-title":"Anaerobic Bacteria Grow within Candida albicans Biofilms and Induce Biofilm Formation in Suspension Cultures","volume":"24","author":"Fox","year":"2014","journal-title":"Curr. Biol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2780","doi-asserted-by":"crossref","first-page":"2163","DOI":"10.1016\/j.jds.2024.03.016","article-title":"Aggregation and adhesion ability of various probiotic strains and Candida species: An in vitro study","volume":"19","author":"Chantanawilas","year":"2024","journal-title":"Journal of Dental Sciences."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb2785","doi-asserted-by":"crossref","first-page":"4027","DOI":"10.1021\/acssynbio.4c00466","article-title":"Engineering adhesion of the probiotic strain Escherichia coli Nissle to the fungal pathogen Candida albicans","volume":"13","author":"Chamas","year":"2024","journal-title":"ACS Synth. Biol."},{"key":"10.1016\/j.addr.2025.115740_bb2790","first-page":"11","article-title":"Staphylococcus epidermidis Boosts Innate Immune Response by Activation of Gamma Delta T Cells and Induction of Perforin-2 in Human Skin","author":"Pastar","year":"2020","journal-title":"Front. Immunol."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2795","doi-asserted-by":"crossref","first-page":"e02589","DOI":"10.1128\/spectrum.02589-21","article-title":"Hydrolytic Enzymes as Potentiators of Antimicrobials against an Inter-Kingdom Biofilm Model","volume":"10","author":"Ruiz-Sorribas","year":"2022","journal-title":"Microbiology Spectrum."},{"key":"10.1016\/j.addr.2025.115740_bb2800","article-title":"Therapeutic responses to Roseomonas mucosa in atopic dermatitis may involve lipid-mediated TNF-related epithelial repair","volume":"12(560):eaaz8631","author":"Myles","year":"2020","journal-title":"Sci. Transl. Med."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2805","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1012031","article-title":"Candida albicans translocation through the intestinal epithelial barrier is promoted by fungal zinc acquisition and limited by NF\u03baB-mediated barrier protection","volume":"20","author":"Sprague","year":"2024","journal-title":"PLoS Pathog."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2810","doi-asserted-by":"crossref","first-page":"1219","DOI":"10.1053\/j.gastro.2005.01.050","article-title":"Recombinant Probiotics for Treatment and Prevention of Enterotoxigenic Escherichia coli Diarrhea","volume":"128","author":"Paton","year":"2005","journal-title":"Gastroenterology"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2815","doi-asserted-by":"crossref","first-page":"e03409","DOI":"10.1128\/mbio.03409-23","article-title":"Nanobody-mediated neutralization of candidalysin prevents epithelial damage and inflammatory responses that drive vulvovaginal candidiasis pathogenesis","volume":"15","author":"Valentine","year":"2024","journal-title":"mBio"},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb2820","doi-asserted-by":"crossref","first-page":"e01626","DOI":"10.1128\/aem.01626-24","article-title":"The role of serum albumin in Candida albicans filamentation, germ tube formation, and farnesol sequestration","volume":"90","author":"Gutzmann","year":"2024","journal-title":"Appl. Environ. Microbiol."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb2825","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0028830","article-title":"Farnesol-Induced Apoptosis in Candida albicans Is Mediated by Cdr1-p Extrusion and Depletion of Intracellular Glutathione","volume":"6","author":"Zhu","year":"2011","journal-title":"PLoS One"},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb2830","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1038\/nbt.3011","article-title":"Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases","volume":"32","author":"Citorik","year":"2014","journal-title":"Nat. Biotechnol."},{"issue":"11","key":"10.1016\/j.addr.2025.115740_bb2835","doi-asserted-by":"crossref","first-page":"1146","DOI":"10.1038\/nbt.3043","article-title":"Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials","volume":"32","author":"Bikard","year":"2014","journal-title":"Nat. Biotechnol."},{"issue":"18","key":"10.1016\/j.addr.2025.115740_bb2840","doi-asserted-by":"crossref","first-page":"5758","DOI":"10.1128\/JB.181.18.5758-5765.1999","article-title":"Bacterial Conjugation Protein MobA Mediates Integration of Complex DNA Structures into Plant Cells","volume":"181","author":"Bravo-Angel","year":"1999","journal-title":"J. Bacteriol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2845","doi-asserted-by":"crossref","first-page":"e00050","DOI":"10.1128\/msystems.00050-24","article-title":"Tuning interdomain conjugation to enable in situ population modification in yeasts","volume":"9","author":"Stindt","year":"2024","journal-title":"mSystems"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2850","doi-asserted-by":"crossref","first-page":"125","DOI":"10.3390\/jof7020125","article-title":"Targeted Delivery of Gene Silencing in Fungi Using Genetically Engineered Bacteria","volume":"7","author":"Ni\u00f1o-S\u00e1nchez","year":"2021","journal-title":"J Fungi (Basel)."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2855","doi-asserted-by":"crossref","first-page":"3410","DOI":"10.1128\/IAI.69.5.3410-3412.2001","article-title":"Passive Immunization with Melanin-Binding Monoclonal Antibodies Prolongs Survival of Mice with Lethal Cryptococcus neoformans Infection","volume":"69","author":"Rosas","year":"2001","journal-title":"Infect. Immun."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2860","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1097\/QAD.0b013e3283536a93","article-title":"Adjunctive interferon-\u03b3 immunotherapy for the treatment of HIV-associated cryptococcal meningitis: a randomized controlled trial","volume":"26","author":"Jarvis","year":"2012","journal-title":"AIDS"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2865","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1086\/649858","article-title":"Clinical Practice Guidelines for the Management of Cryptococcal Disease: 2010 Update by the Infectious Diseases Society of America","volume":"50","author":"Perfect","year":"2010","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.addr.2025.115740_bb2870","doi-asserted-by":"crossref","unstructured":"Palmieri F, Trompette A, Shanmuganathan A, et al. Fighting Aspergillus infection using biocontrol bacteria: A proof-of-concept of environmental interference in a translational setting. bioRxiv. Preprint posted online March 27, 2025:2025.03.27.645790. doi:https:\/\/doi.org\/10.1101\/2025.03.27.645790.","DOI":"10.1101\/2025.03.27.645790"},{"issue":"16","key":"10.1016\/j.addr.2025.115740_bb2875","doi-asserted-by":"crossref","first-page":"8474","DOI":"10.3390\/ijms22168474","article-title":"A Shifted Composition of the Lung Microbiota Conditions the Antifungal Response of Immunodeficient Mice","volume":"22","author":"Nunzi","year":"2021","journal-title":"Int. J. Mol. Sci."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2880","doi-asserted-by":"crossref","first-page":"804","DOI":"10.1111\/j.1462-5822.2006.00836.x","article-title":"Molecular mechanisms underlying the probiotic effects of Escherichia coli Nissle 1917 involve ZO-2 and PKC\u03b6 redistribution resulting in tight junction and epithelial barrier repair","volume":"9","author":"Zyrek","year":"2007","journal-title":"Cell. Microbiol."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2885","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3001822","article-title":"Candida albicans selection for human commensalism results in substantial within-host diversity without decreasing fitness for invasive disease","volume":"21","author":"Anderson","year":"2023","journal-title":"PLoS Biol."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2890","doi-asserted-by":"crossref","first-page":"404","DOI":"10.1016\/j.chom.2019.02.004","article-title":"Commensal Candida albicans positively calibrates systemic Th17 immunological responses","volume":"25","author":"Shao","year":"2019","journal-title":"Cell Host Microbe"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2895","doi-asserted-by":"crossref","first-page":"1340","DOI":"10.1016\/j.cell.2019.01.041","article-title":"Human anti-fungal Th17 immunity and pathology rely on cross-reactivity against Candida albicans","volume":"176","author":"Bacher","year":"2019","journal-title":"Cell"},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb2900","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1005129","article-title":"Candida albicans inhibits Pseudomonas aeruginosa virulence through suppression of pyochelin and pyoverdine biosynthesis","volume":"11","author":"Lopez-Medina","year":"2015","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.addr.2025.115740_bb2905","first-page":"1","article-title":"Pre-colonization with the commensal fungus Candida albicans reduces murine susceptibility to Clostridium difficile infection","volume":"18","author":"Markey","year":"2018","journal-title":"Gut Microbes. Published online April"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2910","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0210798","article-title":"Oral Candida administration in a Clostridium difficile mouse model worsens disease severity but is attenuated by Bifidobacterium","volume":"14","author":"Panpetch","year":"2019","journal-title":"PLoS One"},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb2915","doi-asserted-by":"crossref","first-page":"3371","DOI":"10.1128\/IAI.00449-12","article-title":"Candida albicans and bacterial microbiota interactions in the cecum during recolonization following broad-spectrum antibiotic therapy","volume":"80","author":"Mason","year":"2012","journal-title":"Infect. Immun."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2920","doi-asserted-by":"crossref","first-page":"3663","DOI":"10.1038\/s41467-018-06103-6","article-title":"Gut fungal dysbiosis correlates with reduced efficacy of fecal microbiota transplantation in Clostridium difficile infection","volume":"9","author":"Zuo","year":"2018","journal-title":"Nat. Commun."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2925","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1016\/j.chom.2020.03.006","article-title":"Fungal trans-kingdom dynamics linked to responsiveness to fecal microbiota transplantation (FMT) therapy in ulcerative colitis","volume":"27","author":"Leonardi","year":"2020","journal-title":"Cell Host Microbe"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb2930","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1099\/jmm.0.47705-0","article-title":"Signal-mediated interactions between Pseudomonas aeruginosa and Candida albicans","volume":"57","author":"McAlester","year":"2008","journal-title":"J. Med. Microbiol."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2935","doi-asserted-by":"crossref","first-page":"2392","DOI":"10.1128\/AAC.01551-08","article-title":"Farnesol-induced apoptosis in Candida albicans","volume":"53","author":"Shirtliff","year":"2009","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.addr.2025.115740_bb2940","series-title":"The Fungal Quorum-Sensing Molecule Farnesol Activates Innate Immune Cells but Suppresses Cellular Adaptive Immunity. Netea M, Zychlinsky A, eds. mBio","author":"Leonhardt","year":"2015"},{"key":"10.1016\/j.addr.2025.115740_bb2945","doi-asserted-by":"crossref","DOI":"10.3389\/froh.2022.880746","article-title":"Probiotics for Oral Candidiasis: Critical Appraisal of the Evidence and a Path Forward","volume":"3","author":"Archambault","year":"2022","journal-title":"Front Oral Health."},{"key":"10.1016\/j.addr.2025.115740_bb2950","article-title":"Dutch trial of probiotics in acute pancreatitis is to be investigated after deaths","volume":"7","author":"Sheldon","year":"2008","journal-title":"Published online February"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb2955","doi-asserted-by":"crossref","DOI":"10.1038\/s41424-018-0030-7","article-title":"Brain fogginess, gas and bloating: a link between SIBO, probiotics and metabolic acidosis","volume":"9","author":"Rao","year":"2018","journal-title":"Clin. Transl. Gastroenterol."},{"key":"10.1016\/j.addr.2025.115740_bb2960","series-title":"Enhancing the persistence of engineered biotherapeutics in the gut: Adhesion, glycan metabolism, and environmental resistance. Advanced Drug Delivery Reviews. Published online April 16","first-page":"115591","author":"Lee","year":"2025"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb2965","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1038\/s41579-022-00720-1","article-title":"Tackling the emerging threat of antifungal resistance to human health","volume":"20","author":"Fisher","year":"2022","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.addr.2025.115740_bb2970","article-title":"Reference Range, Interpretation","volume":"30","author":"Susceptibility","year":"2025","journal-title":"Collection and Panels. Published online July"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb2975","doi-asserted-by":"crossref","first-page":"143","DOI":"10.3390\/jof11020143","article-title":"Insight into the Mechanisms and Clinical Relevance of Antifungal Heteroresistance","volume":"11","author":"Su","year":"2025","journal-title":"Journal of Fungi."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb2980","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1016\/j.cmi.2022.10.018","article-title":"Antibiotic heteroresistance in ESKAPE pathogens, from bench to bedside","volume":"29","author":"Roch","year":"2023","journal-title":"Clin. Microbiol. Infect."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb2985","doi-asserted-by":"crossref","first-page":"e03475","DOI":"10.1128\/mbio.03475-24","article-title":"Toward the consensus of definitions for the phenomena of antifungal tolerance and persistence in filamentous fungi","volume":"16","author":"Amich","year":"2025","journal-title":"mBio"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb2990","doi-asserted-by":"crossref","first-page":"41284","DOI":"10.1038\/srep41284","article-title":"TDtest: easy detection of bacterial tolerance and persistence in clinical isolates by a modified disk-diffusion assay","volume":"7","author":"Gefen","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.addr.2025.115740_bb2995","article-title":"Genetic and Transcriptomic Analyses of Ciprofloxacin-Tolerant Staphylococcus aureus Isolated by the Replica Plating Tolerance Isolation System (REPTIS)","volume":"63(2):10.1128\/aac.02019-18","author":"Matsuo","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb3000","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41392-024-01866-5","article-title":"Bacterial persisters: molecular mechanisms and therapeutic development","volume":"9","author":"Niu","year":"2024","journal-title":"Sig Transduct Target Ther."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb3005","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1016\/j.tim.2023.08.006","article-title":"What is microbial dormancy?","volume":"32","author":"McDonald","year":"2024","journal-title":"Trends Microbiol."},{"issue":"18","key":"10.1016\/j.addr.2025.115740_bb3010","doi-asserted-by":"crossref","first-page":"7963","DOI":"10.1007\/s00253-013-5115-3","article-title":"Detecting the dormant: a review of recent advances in molecular techniques for assessing the viability of bacterial endospores","volume":"97","author":"Mohapatra","year":"2013","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.addr.2025.115740_bb3015","doi-asserted-by":"crossref","DOI":"10.1128\/mbio.00447-22","article-title":"The Caspofungin Paradoxical Effect is a Tolerant \u201cEagle Effect\u201d in the Filamentous Fungal Pathogen Aspergillus fumigatus","author":"Valero","year":"2022","journal-title":"mBio"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb3020","first-page":"702","article-title":"Aneuploidy underlies paradoxical growth of rezafungin and enables cross-tolerance to echinocandins in Candida albicans","volume":"85","author":"Li","year":"2022","journal-title":"J. Infect."},{"key":"10.1016\/j.addr.2025.115740_bb3025","first-page":"15","article-title":"Caspofungin paradoxical growth in Candida albicans requires stress pathway activation and promotes unstable echinocandin resistance mediated by aneuploidy","author":"Wei","year":"2025","journal-title":"Front. Cell. Infect. Microbiol."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3030","doi-asserted-by":"crossref","first-page":"1017","DOI":"10.1016\/j.cell.2021.01.016","article-title":"Human gut mycobiota tune immunity via CARD9-dependent induction of anti-fungal IgG antibodies","volume":"184","author":"Doron","year":"2021","journal-title":"Cell"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb3035","doi-asserted-by":"crossref","first-page":"831","DOI":"10.1016\/j.cell.2022.01.017","article-title":"Mucosal fungi promote gut barrier function and social behavior via Type 17 immunity","volume":"185","author":"Leonardi","year":"2022","journal-title":"Cell"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb3040","doi-asserted-by":"crossref","DOI":"10.1038\/s42003-021-01870-3","article-title":"Cell wall N-glycan of Candida albicans ameliorates early hyper-and late hypo-immunoreactivity in sepsis","volume":"4","author":"Kawakita","year":"2021","journal-title":"Communications Biology."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb3045","doi-asserted-by":"crossref","first-page":"865","DOI":"10.1016\/j.chom.2016.05.003","article-title":"Immunological consequences of intestinal fungal dysbiosis","volume":"19","author":"Wheeler","year":"2016","journal-title":"Cell Host Microbe"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb3050","doi-asserted-by":"crossref","first-page":"809","DOI":"10.1016\/j.chom.2017.10.013","article-title":"Commensal fungi recapitulate the protective benefits of intestinal bacteria","volume":"22","author":"Jiang","year":"2017","journal-title":"Cell Host Microbe"},{"issue":"7902","key":"10.1016\/j.addr.2025.115740_bb3055","doi-asserted-by":"crossref","first-page":"672","DOI":"10.1038\/s41586-022-04502-w","article-title":"Immune regulation by fungal strain diversity in inflammatory bowel disease","volume":"603","author":"Li","year":"2022","journal-title":"Nature"},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb3060","doi-asserted-by":"crossref","first-page":"1493","DOI":"10.1038\/s41564-021-00983-z","article-title":"Mycobiota-induced IgA antibodies regulate fungal commensalism in the gut and are dysregulated in Crohn\u2019s disease","volume":"6","author":"Doron","year":"2021","journal-title":"Nat. Microbiol."},{"issue":"17","key":"10.1016\/j.addr.2025.115740_bb3065","doi-asserted-by":"crossref","DOI":"10.1126\/sciimmunol.aam8834","article-title":"Oral epithelial cells orchestrate innate type 17 responses to Candida albicans through the virulence factor candidalysin","volume":"2","author":"Verma","year":"2017","journal-title":"Sci. Immunol."},{"issue":"12","key":"10.1016\/j.addr.2025.115740_bb3070","doi-asserted-by":"crossref","first-page":"1959","DOI":"10.1086\/323759","article-title":"Revisiting the source of candidemia: skin or gut?","volume":"33","author":"Nucci","year":"2001","journal-title":"Clin. Infect. Dis."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3075","doi-asserted-by":"crossref","DOI":"10.3390\/jof3040057","article-title":"Global and multi-national prevalence of fungal diseases\u2014estimate precision","volume":"3","author":"Bongomin","year":"2017","journal-title":"Journal of fungi."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb3080","doi-asserted-by":"crossref","DOI":"10.1080\/19490976.2023.2287618","article-title":"Unveiling Candida albicans intestinal carriage in healthy volunteers: the role of micro-and mycobiota, diet, host genetics and immune response","volume":"15","author":"Delavy","year":"2023","journal-title":"Gut Microbes"},{"issue":"28","key":"10.1016\/j.addr.2025.115740_bb3085","doi-asserted-by":"crossref","first-page":"16465","DOI":"10.1073\/pnas.2003022117","article-title":"Immunity to commensal skin fungi promotes psoriasiform skin inflammation","volume":"117","author":"Hurabielle","year":"2020","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3090","doi-asserted-by":"crossref","first-page":"85","DOI":"10.3314\/mmj.23-00008","article-title":"2021 Epidemiological Survey of Dermatomycoses in Japan","volume":"64","author":"Nakamura","year":"2023","journal-title":"Medical Mycology Journal."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb3095","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1159\/000232390","article-title":"Dermatologists in Hospital Wards: An 8-Year Study of Dermatology Consultations","volume":"219","author":"Pe\u00f1ate","year":"2009","journal-title":"Dermatology"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb3100","first-page":"11","article-title":"What interventions are effective for the prevention and treatment of cutaneous candidiasis?","volume":"30","author":"Evans","year":"2003","journal-title":"Journal of Wound Ostomy & Continence Nursing."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb3105","doi-asserted-by":"crossref","first-page":"1863","DOI":"10.1111\/jdv.15782","article-title":"Cutaneous candidiasis\u2013an evidence-based review of topical and systemic treatments to inform clinical practice","volume":"33","author":"Taudorf","year":"2019","journal-title":"J. Eur. Acad. Dermatol. Venereol."},{"key":"10.1016\/j.addr.2025.115740_bb3110","article-title":"Global incidence and mortality of severe fungal disease","volume":"12","author":"Denning","year":"2024","journal-title":"The Lancet Infectious Diseases. Published online January"},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb3115","doi-asserted-by":"crossref","DOI":"10.1016\/j.jinf.2024.106229","article-title":"Attributable mortality of candidemia\u2013results from the ECMM Candida III multinational European observational cohort study","volume":"89","author":"Salmanton-Garc\u00eda","year":"2024","journal-title":"J. Infect."},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb3120","doi-asserted-by":"crossref","first-page":"606","DOI":"10.1016\/j.chom.2016.10.001","article-title":"IL-17 receptor signaling in oral epithelial cells is critical for protection against oropharyngeal candidiasis","volume":"20","author":"Conti","year":"2016","journal-title":"Cell Host Microbe"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb3125","article-title":"Candida infection associated with salivary gland\u2014A narrative review. Journal of","volume":"10","author":"Ok","year":"2020","journal-title":"Clinical Medicine."},{"issue":"7","key":"10.1016\/j.addr.2025.115740_bb3130","doi-asserted-by":"crossref","first-page":"2403","DOI":"10.1128\/iai.63.7.2403-2408.1995","article-title":"Circulating CD4 and CD8 T cells have little impact on host defense against experimental vaginal candidiasis","volume":"63","author":"Fidel","year":"1995","journal-title":"Infect. Immun."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb3135","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1258\/095646202760029741","article-title":"Vulvovaginal candidiasis: a comparison of HIV-positive and-negative women","volume":"13","author":"Sobel","year":"2002","journal-title":"Int. J. STD AIDS"},{"key":"10.1016\/j.addr.2025.115740_bb3140","article-title":"Candida Urinary Tract Infections\u2014Epidemiology","volume":"52(suppl_6):S433-S436","author":"Sobel","year":"2011","journal-title":"Clin. Infect. Dis."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb3145","article-title":"Candiduria: Epidemiology, Resistance, Classical and Alternative Antifungals Drugs. SOJ Microbiol","volume":"2","author":"Voltan","year":"2014","journal-title":"Infect. Dis. Ther."},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb3150","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1155\/2005\/385768","article-title":"Complicated urinary tract infection in adults","volume":"16","author":"Nicolle","year":"2005","journal-title":"Can. J. Infect. Dis. Med. Microbiol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb3155","doi-asserted-by":"crossref","first-page":"2404","DOI":"10.1128\/AAC.47.8.2404-2412.2003","article-title":"Candida albicans mutations in the ergosterol biosynthetic pathway and resistance to several antifungal agents","volume":"47","author":"Sanglard","year":"2003","journal-title":"Antimicrob. Agents Chemother."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb3160","doi-asserted-by":"crossref","first-page":"2551","DOI":"10.1093\/jac\/dkv140","article-title":"Stepwise emergence of azole, echinocandin and amphotericin B multidrug resistance in vivo in Candida albicans orchestrated by multiple genetic alterations","volume":"70","author":"Jensen","year":"2015","journal-title":"J. Antimicrob. Chemother."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb3165","doi-asserted-by":"crossref","first-page":"6060","DOI":"10.1128\/AAC.00732-16","article-title":"The RTA3 gene, encoding a putative lipid translocase, influences the susceptibility of Candida albicans to fluconazole","volume":"60","author":"Whaley","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb3170","doi-asserted-by":"crossref","first-page":"2676","DOI":"10.1128\/AAC.45.10.2676-2684.2001","article-title":"Prevalence of molecular mechanisms of resistance to azole antifungal agents in Candida albicans strains displaying high-level fluconazole resistance isolated from human immunodeficiency virus-infected patients","volume":"45","author":"Perea","year":"2001","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3175","doi-asserted-by":"crossref","first-page":"609","DOI":"10.5578\/mb.10105","article-title":"Investigation of mutations in transcription factors of efflux pump genes in fluconazole-resistant Candida albicans strains overexpressing the efflux pumps","volume":"49","author":"Kalkandelen","year":"2015","journal-title":"Mikrobiyoloji Bulteni."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3180","doi-asserted-by":"crossref","first-page":"2139","DOI":"10.1534\/genetics.105.054767","article-title":"A mutation in Tac1p, a transcription factor regulating CDR1 and CDR2, is coupled with loss of heterozygosity at chromosome 5 to mediate antifungal resistance in Candida albicans","volume":"172","author":"Coste","year":"2006","journal-title":"Genetics"},{"issue":"6","key":"10.1016\/j.addr.2025.115740_bb3185","doi-asserted-by":"crossref","first-page":"2223","DOI":"10.1128\/AAC.48.6.2223-2227.2004","article-title":"Clade-specific flucytosine resistance is due to a single nucleotide change in the FUR1 gene of Candida albicans","volume":"48","author":"Dodgson","year":"2004","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3190","doi-asserted-by":"crossref","first-page":"1365","DOI":"10.1128\/AAC.50.4.1365-1371.2006","article-title":"Overexpression of the MDR1 gene is sufficient to confer increased resistance to toxic compounds in Candida albicans","volume":"50","author":"Hiller","year":"2006","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3195","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1128\/AAC.02299-17","article-title":"FKS2 and FKS3 genes of opportunistic human pathogen Candida albicans influence echinocandin susceptibility","volume":"62","author":"Suwunnakorn","year":"2018","journal-title":"Antimicrob. Agents Chemother."},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb3200","doi-asserted-by":"crossref","first-page":"2187","DOI":"10.1099\/00221287-128-9-2187","article-title":"Growth kinetics and morphology of colonies of the filamentous form of Candida albicans","volume":"128","author":"Gow","year":"1982","journal-title":"Microbiology"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb3205","doi-asserted-by":"crossref","first-page":"532","DOI":"10.1128\/IAI.01417-13","article-title":"Fungal Morphogenetic Pathways Are Required for the Hallmark Inflammatory Response during Candida albicans Vaginitis. Deepe GS, ed","volume":"82","author":"Peters","year":"2014","journal-title":"Infect. Immun."},{"issue":"3","key":"10.1016\/j.addr.2025.115740_bb3210","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1016\/j.chom.2010.08.002","article-title":"A biphasic innate immune MAPK response discriminates between the yeast and hyphal forms of Candida albicans in epithelial cells","volume":"8","author":"Moyes","year":"2010","journal-title":"Cell Host Microbe"},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3215","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1016\/j.tim.2018.01.007","article-title":"Dynamic fungal cell wall architecture in stress adaptation and immune evasion","volume":"26","author":"Hopke","year":"2018","journal-title":"Trends Microbiol."},{"issue":"8","key":"10.1016\/j.addr.2025.115740_bb3220","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1139\/m91-108","article-title":"Chlamydospore-like cells of Candida albicans in the gastrointestinal tract of infected, immunocompromised mice","volume":"37","author":"Cole","year":"1991","journal-title":"Can. J. Microbiol."},{"issue":"10","key":"10.1016\/j.addr.2025.115740_bb3225","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0164449","article-title":"Candida albicans ISW2 Regulates Chlamydospore Suspensor Cell Formation and Virulence In Vivo in a Mouse Model of Disseminated Candidiasis","volume":"11","author":"Navarathna","year":"2016","journal-title":"PLoS One"},{"issue":"5","key":"10.1016\/j.addr.2025.115740_bb3230","doi-asserted-by":"crossref","first-page":"605","DOI":"10.3390\/pharmaceutics16050605","article-title":"Again and Again\u2014Survival of Candida albicans in Urine Containing Antifungals","volume":"16","author":"Facchini","year":"2024","journal-title":"Pharmaceutics"},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb3235","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1139\/m84-030","article-title":"The relationship between yeast cell size and cell division in Candida albicans","volume":"30","author":"Chaffin","year":"1984","journal-title":"Can. J. Microbiol."},{"issue":"2","key":"10.1016\/j.addr.2025.115740_bb3240","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1093\/genetics\/162.2.737","article-title":"In Candida albicans, white-opaque switchers are homozygous for mating type","volume":"162","author":"Lockhart","year":"2002","journal-title":"Genetics"},{"issue":"1","key":"10.1016\/j.addr.2025.115740_bb3245","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1128\/EC.00266-12","article-title":"White-opaque switching of Candida albicans allows immune evasion in an environment-dependent fashion","volume":"12","author":"Sasse","year":"2013","journal-title":"Eukaryot. Cell"},{"issue":"9","key":"10.1016\/j.addr.2025.115740_bb3250","doi-asserted-by":"crossref","first-page":"1088","DOI":"10.1038\/ng.2710","article-title":"Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism","volume":"45","author":"Pande","year":"2013","journal-title":"Nat. Genet."},{"issue":"4","key":"10.1016\/j.addr.2025.115740_bb3255","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.1001830","article-title":"Discovery of a \u201cwhite-gray-opaque\u201d tristable phenotypic switching system in Candida albicans: roles of non-genetic diversity in host adaptation","volume":"12","author":"Tao","year":"2014","journal-title":"PLoS Biol."},{"key":"10.1016\/j.addr.2025.115740_bb3260","series-title":"Variation in Candida albicans EFG1 Expression Enables Host-Dependent Changes in Colonizing Fungal Populations. Lorenz M, Berman J, eds. mBio","author":"Pierce","year":"2012"}],"container-title":["Advanced Drug Delivery Reviews"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0169409X2500225X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0169409X2500225X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,6,16]],"date-time":"2026-06-16T08:57:35Z","timestamp":1781600255000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0169409X2500225X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,2]]},"references-count":651,"alternative-id":["S0169409X2500225X"],"URL":"https:\/\/doi.org\/10.1016\/j.addr.2025.115740","relation":{},"ISSN":["0169-409X"],"issn-type":[{"value":"0169-409X","type":"print"}],"subject":[],"published":{"date-parts":[[2026,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Microbial heterogeneity-mediated treatment evasion and the potential for engineered live biotherapeutic products","name":"articletitle","label":"Article Title"},{"value":"Advanced Drug Delivery Reviews","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.addr.2025.115740","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"115740"}}