{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T16:44:12Z","timestamp":1786985052976,"version":"build-2736575974"},"reference-count":28,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2021,4,1]],"date-time":"2021-04-01T00:00:00Z","timestamp":1617235200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2021,4,1]],"date-time":"2021-04-01T00:00:00Z","timestamp":1617235200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2021,4,1]],"date-time":"2021-04-01T00:00:00Z","timestamp":1617235200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2021,4,1]],"date-time":"2021-04-01T00:00:00Z","timestamp":1617235200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2021,4,1]],"date-time":"2021-04-01T00:00:00Z","timestamp":1617235200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2021,4,1]],"date-time":"2021-04-01T00:00:00Z","timestamp":1617235200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2021,4,1]],"date-time":"2021-04-01T00:00:00Z","timestamp":1617235200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Biochemical and Biophysical Research Communications"],"published-print":{"date-parts":[[2021,4]]},"DOI":"10.1016\/j.bbrc.2021.02.046","type":"journal-article","created":{"date-parts":[[2021,2,19]],"date-time":"2021-02-19T15:36:44Z","timestamp":1613749004000},"page":"155-161","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":23,"special_numbering":"C","title":["Comparative genomics of the gut commensal Bifidobacterium bifidum reveals adaptation to carbohydrate utilization"],"prefix":"10.1016","volume":"547","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2886-4970","authenticated-orcid":false,"given":"Ahmed G.","family":"Abdelhamid","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Noha K.","family":"El-Dougdoug","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.bbrc.2021.02.046_bib1","doi-asserted-by":"crossref","first-page":"548","DOI":"10.1099\/00207713-41-4-548","article-title":"Phenotypic differentiation of bifidobacteria of human and animal origins","volume":"41","author":"Gavini","year":"1991","journal-title":"Int. J. Syst. Bacteriol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib2","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1111\/j.1365-2249.2006.03051.x","article-title":"Role of interleukin (IL-10) in probiotic-mediated immune modulation: an assessment in wild-type and IL-10 knock-out mice","volume":"144","author":"Sheil","year":"2006","journal-title":"Clin. Exp. Immunol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib3","doi-asserted-by":"crossref","first-page":"459s","DOI":"10.1093\/ajcn\/73.2.459s","article-title":"Effects of prebiotics on mineral metabolism","volume":"73","author":"Scholz-Ahrens","year":"2001","journal-title":"Am. J. Clin. Nutr."},{"key":"10.1016\/j.bbrc.2021.02.046_bib4","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1126\/science.1219328","article-title":"Microbial exposure during early life has persistent effects on natural killer T cell function","volume":"336","author":"Olszak","year":"2012","journal-title":"Science (80-. )"},{"key":"10.1016\/j.bbrc.2021.02.046_bib5","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1542\/peds.72.3.317","article-title":"Development and differences of intestinal flora in the neonatal period in breast-fed and bottle-fed infants","volume":"72","author":"Yoshioka","year":"1983","journal-title":"Pediatrics"},{"key":"10.1016\/j.bbrc.2021.02.046_bib6","doi-asserted-by":"crossref","first-page":"473S","DOI":"10.3945\/an.111.001412","article-title":"The predominance of type I oligosaccharides is a feature specific to human breast milk","volume":"3","author":"Urashima","year":"2012","journal-title":"Adv. Nutr."},{"key":"10.1016\/j.bbrc.2021.02.046_bib7","doi-asserted-by":"crossref","first-page":"980","DOI":"10.1128\/AEM.03500-15","article-title":"Genomics of the genus Bifidobacterium reveals species-specific adaptation to the glycan\u2013rich gut environment","volume":"82","author":"Milani","year":"2016","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib8","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1016\/j.tim.2017.10.001","article-title":"Glycan utilization and cross-feeding activities by bifidobacteria","volume":"26","author":"Turroni","year":"2018","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib9","doi-asserted-by":"crossref","first-page":"1030","DOI":"10.3389\/fmicb.2015.01030","article-title":"Glycan cross-feeding activities between bifidobacteria under in\u00a0vitro conditions","volume":"6","author":"Turroni","year":"2015","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib10","doi-asserted-by":"crossref","first-page":"15782","DOI":"10.1038\/srep15782","article-title":"Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut","volume":"5","author":"Milani","year":"2015","journal-title":"Sci. Rep."},{"key":"10.1016\/j.bbrc.2021.02.046_bib11","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1016\/j.chom.2011.10.007","article-title":"Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways","volume":"10","author":"Marcobal","year":"2011","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.bbrc.2021.02.046_bib12","doi-asserted-by":"crossref","first-page":"2515","DOI":"10.1111\/1462-2920.12743","article-title":"Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum","volume":"17","author":"Duranti","year":"2015","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib13","doi-asserted-by":"crossref","first-page":"540","DOI":"10.1093\/oxfordjournals.molbev.a026334","article-title":"Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis","volume":"17","author":"Castresana","year":"2000","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib14","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0009490","article-title":"FastTree 2 \u2013 approximately maximum-likelihood trees for large alignments","volume":"5","author":"Price","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.bbrc.2021.02.046_bib15","doi-asserted-by":"crossref","first-page":"W242","DOI":"10.1093\/nar\/gkw290","article-title":"Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees","volume":"44","author":"Letunic","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.bbrc.2021.02.046_bib16","doi-asserted-by":"crossref","first-page":"2178","DOI":"10.1101\/gr.1224503","article-title":"OrthoMCL: identification of ortholog groups for eukaryotic genomes","volume":"13","author":"Li","year":"2003","journal-title":"Genome Res."},{"key":"10.1016\/j.bbrc.2021.02.046_bib17","article-title":"Interactive Clustered Heat Map Builder: an easy web-based tool for creating sophisticated clustered heat maps","volume":"8","author":"Broom","year":"2020","journal-title":"F1000 Research"},{"key":"10.1016\/j.bbrc.2021.02.046_bib18","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1186\/1471-2105-14-60","article-title":"Genome sequence-based species delimitation with confidence intervals and improved distance functions","volume":"14","author":"Meier-Kolthoff","year":"2013","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.bbrc.2021.02.046_bib19","doi-asserted-by":"crossref","first-page":"19126","DOI":"10.1073\/pnas.0906412106","article-title":"Shifting the genomic gold standard for the prokaryotic species definition","volume":"106","author":"Richter","year":"2009","journal-title":"Proc. Natl. Acad. Sci. Unit. States Am."},{"key":"10.1016\/j.bbrc.2021.02.046_bib20","doi-asserted-by":"crossref","first-page":"566","DOI":"10.1038\/nbt.4163","article-title":"KBase: the United States department of energy systems biology knowledgebase","volume":"36","author":"Arkin","year":"2018","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib21","doi-asserted-by":"crossref","first-page":"2938","DOI":"10.1093\/bioinformatics\/btx364","article-title":"UpSetR: an R package for the visualization of intersecting sets and their properties","volume":"33","author":"Conway","year":"2017","journal-title":"Bioinformatics"},{"key":"10.1016\/j.bbrc.2021.02.046_bib22","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2164-15-170","article-title":"Comparative genomics of the Bifidobacterium breve taxon","volume":"15","author":"Bottacini","year":"2014","journal-title":"BMC Genom."},{"key":"10.1016\/j.bbrc.2021.02.046_bib23","doi-asserted-by":"crossref","first-page":"4304","DOI":"10.1128\/AEM.00984-13","article-title":"Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic Bifidobacterial taxon","volume":"79","author":"Milani","year":"2013","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib24","article-title":"Comparative genomic analysis of 45 type strains of the genus Bifidobacterium: a Snapshot of its genetic diversity and evolution","volume":"10","author":"Sun","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.bbrc.2021.02.046_bib25","doi-asserted-by":"crossref","first-page":"7078","DOI":"10.1128\/AEM.02037-15","article-title":"Exploring vertical transmission of Bifidobacteria from mother to child","volume":"81","author":"Milani","year":"2015","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.bbrc.2021.02.046_bib26","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1186\/s40168-017-0282-6","article-title":"Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission","volume":"5","author":"Duranti","year":"2017","journal-title":"Microbiome"},{"key":"10.1016\/j.bbrc.2021.02.046_bib27","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.phrs.2012.09.001","article-title":"The human milk microbiota: origin and potential roles in health and disease","volume":"69","author":"Fern\u00e1ndez","year":"2013","journal-title":"Pharmacol. Res."},{"key":"10.1016\/j.bbrc.2021.02.046_bib28","doi-asserted-by":"crossref","first-page":"497","DOI":"10.1038\/nrmicro3050","article-title":"The abundance and variety of carbohydrate-active enzymes in the human gut microbiota","volume":"11","author":"El Kaoutari","year":"2013","journal-title":"Nat. Rev. Microbiol."}],"container-title":["Biochemical and Biophysical Research Communications"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0006291X21002308?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0006291X21002308?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,13]],"date-time":"2025-09-13T12:01:43Z","timestamp":1757764903000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0006291X21002308"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,4]]},"references-count":28,"alternative-id":["S0006291X21002308"],"URL":"https:\/\/doi.org\/10.1016\/j.bbrc.2021.02.046","relation":{},"ISSN":["0006-291X"],"issn-type":[{"value":"0006-291X","type":"print"}],"subject":[],"published":{"date-parts":[[2021,4]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Comparative genomics of the gut commensal Bifidobacterium bifidum reveals adaptation to carbohydrate utilization","name":"articletitle","label":"Article Title"},{"value":"Biochemical and Biophysical Research Communications","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.bbrc.2021.02.046","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2021 Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}