{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,7]],"date-time":"2026-08-07T15:50:09Z","timestamp":1786117809306,"version":"build-2736575974"},"reference-count":34,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100004564","name":"Republic of Serbia Ministry of Education Science and Technological Development","doi-asserted-by":"publisher","award":["451-03-33\/2026-03\/200066"],"award-info":[{"award-number":["451-03-33\/2026-03\/200066"]}],"id":[{"id":"10.13039\/501100004564","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000921","name":"European Cooperation in Science and Technology","doi-asserted-by":"publisher","award":["CA21169"],"award-info":[{"award-number":["CA21169"]}],"id":[{"id":"10.13039\/501100000921","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["BioSystems"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.biosystems.2026.105894","type":"journal-article","created":{"date-parts":[[2026,7,20]],"date-time":"2026-07-20T23:07:34Z","timestamp":1784588854000},"page":"105894","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Separable spectral and conformational channels in proteins: A quantum-like view of dual information encoding"],"prefix":"10.1016","volume":"267","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8177-5734","authenticated-orcid":false,"given":"Nata\u0161a \u017d.","family":"Mi\u0161i\u0107","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.biosystems.2026.105894_b1","series-title":"Quantum Adaptivity in Biology: From Genetics to Cognition","author":"Asano","year":"2015"},{"key":"10.1016\/j.biosystems.2026.105894_b2","series-title":"Introduction to Protein Structure","author":"Branden","year":"1999"},{"issue":"10","key":"10.1016\/j.biosystems.2026.105894_b3","doi-asserted-by":"crossref","first-page":"3390","DOI":"10.1093\/nar\/gki615","article-title":"Protein length in eukaryotic and prokaryotic proteomes","volume":"33","author":"Brocchieri","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.biosystems.2026.105894_b4","series-title":"Quantum Models of Cognition and Decision","author":"Busemeyer","year":"2012"},{"key":"10.1016\/j.biosystems.2026.105894_b5","first-page":"45","article-title":"Prediction of the secondary structure of proteins from their amino acid sequence","volume":"47","author":"Chou","year":"1978","journal-title":"Adv. Enzymol. Relat. Areas Mol. Biol."},{"key":"10.1016\/j.biosystems.2026.105894_b6","series-title":"Statistical Power Analysis for the Behavioral Sciences","author":"Cohen","year":"1988"},{"issue":"12","key":"10.1016\/j.biosystems.2026.105894_b7","doi-asserted-by":"crossref","first-page":"1101","DOI":"10.1109\/10.335859","article-title":"Macromolecular bioactivity: Is it resonant interaction between macromolecules?\u2014Theory and applications","volume":"41","author":"Cosic","year":"1994","journal-title":"IEEE Trans. Biomed. Eng."},{"key":"10.1016\/j.biosystems.2026.105894_b8","series-title":"The Resonant Recognition Model of Macromolecular Bioactivity: Theory and Applications","first-page":"47","article-title":"Relation between the RRM and 3D protein structures","author":"Cosic","year":"1997"},{"key":"10.1016\/j.biosystems.2026.105894_b9","doi-asserted-by":"crossref","first-page":"9877","DOI":"10.1038\/s41598-017-09992-7","article-title":"Anesthetic alterations of collective terahertz oscillations in tubulin correlate with clinical potency: Implications for anesthetic action and post-operative cognitive dysfunction","volume":"7","author":"Craddock","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.biosystems.2026.105894_b10","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1186\/s12859-016-0930-z","article-title":"Parasail: SIMD c library for global, semi-global, and local pairwise sequence alignments","volume":"17","author":"Daily","year":"2016","journal-title":"BMC Bioinformatics"},{"issue":"Suppl. 3","key":"10.1016\/j.biosystems.2026.105894_b11","first-page":"345","article-title":"A model of evolutionary change in proteins","volume":"5","author":"Dayhoff","year":"1978","journal-title":"Atlas Protein Seq. Struct."},{"key":"10.1016\/j.biosystems.2026.105894_b12","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1007\/s00114-013-1133-3","article-title":"Shifting wavelengths of ultraweak photon emissions from dying melanoma cells: Their chemical enhancement and blocking are predicted by Cosic\u2019s theory of resonant recognition model for macromolecules","volume":"101","author":"Dotta","year":"2014","journal-title":"Naturwissenschaften"},{"issue":"23","key":"10.1016\/j.biosystems.2026.105894_b13","doi-asserted-by":"crossref","first-page":"3150","DOI":"10.1093\/bioinformatics\/bts565","article-title":"CD-HIT: Accelerated for clustering the next-generation sequencing data","volume":"28","author":"Fu","year":"2012","journal-title":"Bioinformatics"},{"issue":"4154","key":"10.1016\/j.biosystems.2026.105894_b14","doi-asserted-by":"crossref","first-page":"862","DOI":"10.1126\/science.185.4154.862","article-title":"Amino acid difference formula to help explain protein evolution","volume":"185","author":"Grantham","year":"1974","journal-title":"Science"},{"issue":"3\u20134","key":"10.1016\/j.biosystems.2026.105894_b15","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1016\/0378-4754(96)80476-9","article-title":"Orchestrated reduction of quantum coherence in brain microtubules: A model for consciousness","volume":"40","author":"Hameroff","year":"1996","journal-title":"Math. Comput. Simulation"},{"issue":"22","key":"10.1016\/j.biosystems.2026.105894_b16","doi-asserted-by":"crossref","first-page":"10915","DOI":"10.1073\/pnas.89.22.10915","article-title":"Amino acid substitution matrices from protein blocks","volume":"89","author":"Henikoff","year":"1992","journal-title":"Proc. Natl. Acad. Sci. USA"},{"issue":"3","key":"10.1016\/j.biosystems.2026.105894_b17","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1002\/pro.5560010313","article-title":"Selection of representative protein data sets","volume":"1","author":"Hobohm","year":"1992","journal-title":"Protein Sci."},{"key":"10.1016\/j.biosystems.2026.105894_b18","doi-asserted-by":"crossref","first-page":"77","DOI":"10.3389\/fphy.2015.00077","article-title":"Quantum-like modeling of cognition","volume":"3","author":"Khrennikov","year":"2015","journal-title":"Front. Phys."},{"key":"10.1016\/j.biosystems.2026.105894_b19","doi-asserted-by":"crossref","DOI":"10.1016\/j.biosystems.2025.105573","article-title":"Constructing a bridge between functioning of oscillatory neuronal networks and quantum-like cognition along with quantum-inspired computation and AI","volume":"257","author":"Khrennikov","year":"2025","journal-title":"BioSystems"},{"key":"10.1016\/j.biosystems.2026.105894_b20","series-title":"Survey Sampling","author":"Kish","year":"1965"},{"issue":"1","key":"10.1016\/j.biosystems.2026.105894_b21","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1016\/0022-2836(82)90515-0","article-title":"A simple method for displaying the hydropathic character of a protein","volume":"157","author":"Kyte","year":"1982","journal-title":"J. Mol. Biol."},{"issue":"7","key":"10.1016\/j.biosystems.2026.105894_b22","doi-asserted-by":"crossref","DOI":"10.1126\/sciadv.abl5855","article-title":"Experimental evidence for long-distance electrodynamic intermolecular forces","volume":"8","author":"Lechelon","year":"2022","journal-title":"Sci. Adv."},{"issue":"13","key":"10.1016\/j.biosystems.2026.105894_b23","doi-asserted-by":"crossref","first-page":"1658","DOI":"10.1093\/bioinformatics\/btl158","article-title":"Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences","volume":"22","author":"Li","year":"2006","journal-title":"Bioinformatics"},{"issue":"9","key":"10.1016\/j.biosystems.2026.105894_b24","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0290845","article-title":"Inhibition of \u03b2-lactamase function by de novo designed peptide","volume":"18","author":"Mishra","year":"2023","journal-title":"PLoS One"},{"key":"10.1016\/j.biosystems.2026.105894_b25","series-title":"Dual-Channel Proteome Analysis: Code and Data","author":"Mi\u0161i\u0107","year":"2026"},{"issue":"3","key":"10.1016\/j.biosystems.2026.105894_b26","article-title":"Out-of-equilibrium collective oscillation as phonon condensation in a model protein","volume":"8","author":"Nardecchia","year":"2018","journal-title":"Phys. Rev. X"},{"issue":"1","key":"10.1016\/j.biosystems.2026.105894_b27","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1186\/s13059-023-02973-2","article-title":"Protein length distribution is remarkably uniform across the tree of life","volume":"24","author":"Nevers","year":"2023","journal-title":"Genome Biol."},{"issue":"2","key":"10.1016\/j.biosystems.2026.105894_b28","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1093\/protein\/12.2.85","article-title":"Twilight zone of protein sequence alignments","volume":"12","author":"Rost","year":"1999","journal-title":"Protein Eng."},{"issue":"1","key":"10.1016\/j.biosystems.2026.105894_b29","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","article-title":"Identification of common molecular subsequences","volume":"147","author":"Smith","year":"1981","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.biosystems.2026.105894_b30","series-title":"Multilevel Analysis","author":"Snijders","year":"2012"},{"issue":"11","key":"10.1016\/j.biosystems.2026.105894_b31","doi-asserted-by":"crossref","first-page":"1026","DOI":"10.1038\/nbt.3988","article-title":"MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets","volume":"35","author":"Steinegger","year":"2017","journal-title":"Nat. Biotechnol."},{"issue":"D1","key":"10.1016\/j.biosystems.2026.105894_b32","doi-asserted-by":"crossref","first-page":"D523","DOI":"10.1093\/nar\/gkac1052","article-title":"UniProt: The Universal Protein Knowledgebase in 2023","volume":"51","author":"The UniProt Consortium","year":"2023","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.biosystems.2026.105894_b33","series-title":"A Theoretical Approach to the Preselection of Carcinogens and Chemical Carcinogenesis","author":"Veljkovi\u0107","year":"1980"},{"issue":"4","key":"10.1016\/j.biosystems.2026.105894_b34","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1080\/09553000701227565","article-title":"The effect of electromagnetic radiation (550\u2013850 nm) on L-lactate dehydrogenase kinetics","volume":"83","author":"Vojisavljevic","year":"2007","journal-title":"Int. J. Radiat. Biol."}],"container-title":["BioSystems"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0303264726002042?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0303264726002042?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,8,6]],"date-time":"2026-08-06T14:41:28Z","timestamp":1786027288000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0303264726002042"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":34,"alternative-id":["S0303264726002042"],"URL":"https:\/\/doi.org\/10.1016\/j.biosystems.2026.105894","relation":{},"ISSN":["0303-2647"],"issn-type":[{"value":"0303-2647","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Separable spectral and conformational channels in proteins: A quantum-like view of dual information encoding","name":"articletitle","label":"Article Title"},{"value":"BioSystems","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.biosystems.2026.105894","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"105894"}}