{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,31]],"date-time":"2026-10-31T04:41:31Z","timestamp":1793421691162,"version":"4.5.0"},"reference-count":156,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100004504","name":"Research Council of Lithuania","doi-asserted-by":"publisher","award":["S-MIP-24-48"],"award-info":[{"award-number":["S-MIP-24-48"]}],"id":[{"id":"10.13039\/501100004504","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Biotechnology Advances"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.biotechadv.2026.108917","type":"journal-article","created":{"date-parts":[[2026,5,9]],"date-time":"2026-05-09T23:09:30Z","timestamp":1778368170000},"page":"108917","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["Metabolism and engineering of chemolithoautotrophic bacteria for carbon dioxide fixation"],"prefix":"10.1016","volume":"90","author":[{"given":"Tasawar","family":"Abbas","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Naglis","family":"Malys","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0005","doi-asserted-by":"crossref","first-page":"1166","DOI":"10.1073\/pnas.1716667115","article-title":"Evolutionary history of carbon monoxide dehydrogenase\/acetyl-CoA synthase, one of the oldest enzymatic complexes","volume":"115","author":"Adam","year":"2018","journal-title":"PNAS"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0010","doi-asserted-by":"crossref","first-page":"00878-18","DOI":"10.1128\/AEM.00878-18","article-title":"Functional genetic elements for controlling gene expression in Cupriavidus necator H16","volume":"84","author":"Alagesan","year":"2018","journal-title":"Appl. Environ. Microbiol."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0015","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1007\/s11306-017-1302-z","article-title":"13 C-assisted metabolic flux analysis to investigate heterotrophic and mixotrophic metabolism in Cupriavidus necator H16","volume":"14","author":"Alagesan","year":"2018","journal-title":"Metabolomics"},{"issue":"3","key":"10.1016\/j.biotechadv.2026.108917_bb0020","doi-asserted-by":"crossref","first-page":"748","DOI":"10.1111\/j.1365-2958.2006.05399.x","article-title":"A novel oxalosuccinate-forming enzyme involved in the reductive carboxylation of 2-oxoglutarate in Hydrogenobacter thermophilus TK-6","volume":"62","author":"Aoshima","year":"2006","journal-title":"Mol. Microbiol."},{"issue":"3","key":"10.1016\/j.biotechadv.2026.108917_bb0025","doi-asserted-by":"crossref","first-page":"763","DOI":"10.1111\/j.1365-2958.2004.04010.x","article-title":"A novel enzyme, citryl-CoA lyase, catalysing the second step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6","volume":"52","author":"Aoshima","year":"2004","journal-title":"Mol. Microbiol."},{"issue":"10","key":"10.1016\/j.biotechadv.2026.108917_bb0030","doi-asserted-by":"crossref","first-page":"2651","DOI":"10.1128\/JB.00158-10","article-title":"Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen oxidizing bacterium Hydrogenobacter thermophilus TK-6","volume":"192","author":"Arai","year":"2010","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0035","doi-asserted-by":"crossref","first-page":"1535","DOI":"10.1038\/s41589-024-01702-5","article-title":"Shifting redox reaction equilibria on demand using an orthogonal redox cofactor","volume":"20","author":"Aspacio","year":"2024","journal-title":"Nat. Chem. Biol."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0040","doi-asserted-by":"crossref","first-page":"2123","DOI":"10.1038\/s41598-022-06028-7","article-title":"dentification and characterization of L- and D-lactate-inducible systems from Escherichia coli MG1655, Cupriavidus necator H16 and Pseudomonas species","volume":"12","author":"Augustiniene","year":"2022","journal-title":"Sci. Rep."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0045","doi-asserted-by":"crossref","first-page":"6978","DOI":"10.1038\/s41467-023-42790-6","article-title":"The potential of CO2-based production cycles in biotechnology to fight the climate crisis","volume":"14","author":"Bachleitner","year":"2023","journal-title":"Nat. Commun."},{"issue":"12","key":"10.1016\/j.biotechadv.2026.108917_bb0050","doi-asserted-by":"crossref","first-page":"1459","DOI":"10.1038\/s41564-020-00793-9","article-title":"Escherichia coli is engineered to grow on CO2 and formic acid","volume":"5","author":"Bang","year":"2020","journal-title":"Nat. Microbiol."},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0055","doi-asserted-by":"crossref","first-page":"2325","DOI":"10.1093\/jxb\/err417","article-title":"A survey of carbon fixation pathways through a quantitative lens","volume":"63","author":"Bar Even","year":"2012","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0060","doi-asserted-by":"crossref","first-page":"3851","DOI":"10.1021\/acs.biochem.6b00495","article-title":"Formate assimilation: the metabolic architecture of natural andsynthetic pathways","volume":"55","author":"Bar-Even","year":"2016","journal-title":"Biochemistry"},{"issue":"19","key":"10.1016\/j.biotechadv.2026.108917_bb0065","first-page":"8889","article-title":"Design and analysis of synthetic carbon fixation pathways","volume":"107","author":"Bar-Even","year":"2010","journal-title":"Biol. Sci."},{"issue":"9","key":"10.1016\/j.biotechadv.2026.108917_bb0070","doi-asserted-by":"crossref","first-page":"1646","DOI":"10.1016\/j.bbabio.2012.05.002","article-title":"Thermodynamic constraints shape the structure of carbon fixation pathways","volume":"1817","author":"Bar-Even","year":"2012","journal-title":"Biochimica et Biophysica Acta (BBA)-Bioenergetics"},{"issue":"8-9","key":"10.1016\/j.biotechadv.2026.108917_bb0075","doi-asserted-by":"crossref","first-page":"1039","DOI":"10.1016\/j.bbabio.2012.10.013","article-title":"Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes","volume":"1827","author":"Bar-Even","year":"2013","journal-title":"Biochimica et Biophysica Acta (BBA) - Bioenergetics"},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0080","doi-asserted-by":"crossref","first-page":"2970","DOI":"10.1021\/ja01150a543","article-title":"Sedoheptulose in photosynthesis by plants","volume":"73","author":"Benson","year":"1951","journal-title":"J. Am. Chem. Soc."},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0085","doi-asserted-by":"crossref","first-page":"1925","DOI":"10.1128\/AEM.02473-10","article-title":"Ecological aspects of the distribution of different autotrophic CO2 fixation pathways","volume":"77","author":"Berg","year":"2011","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0090","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1038\/nrmicro2365","article-title":"Autotrophic carbon fixation in archaea","volume":"8","author":"Berg","year":"2010","journal-title":"Nat. Rev. Microbiol."},{"issue":"9","key":"10.1016\/j.biotechadv.2026.108917_bb0095","doi-asserted-by":"crossref","first-page":"5702","DOI":"10.1021\/acs.chemrev.2c00581","article-title":"Enzymatic Conversion of CO2: From Natural to Artificial Utilization","volume":"123","author":"Bierbaumer","year":"2023","journal-title":"ACS Chem. Rev."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0100","doi-asserted-by":"crossref","DOI":"10.1016\/j.copbio.2023.103019","article-title":"Design, construction, and application of noncanonical redox cofactor infrastructures","volume":"84","author":"Black","year":"2023","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0105","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.mib.2021.03.002","article-title":"New discoveries expand possibilities for carboxysome engineering","volume":"61","author":"Borden","year":"2021","journal-title":"Curr. Opin. Microbiol."},{"issue":"7","key":"10.1016\/j.biotechadv.2026.108917_bb0110","doi-asserted-by":"crossref","first-page":"2880","DOI":"10.1093\/molbev\/msab079","article-title":"Rubisco adaptation is more limited by phylogenetic constraint than by catalytic trade-off","volume":"38","author":"Bouvier","year":"2021","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0115","article-title":"Accelerating enzyme discovery and engineering with high-throughput screening","author":"Bozkurt","year":"2024","journal-title":"Nat. Prod. Rep."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0120","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1016\/j.ymben.2023.02.004","article-title":"Paving the way for synthetic C1 - Metabolism in Pseudomonas putida through the reductive glycine pathway","volume":"76","author":"Bruinsma","year":"2023","journal-title":"Metab. Eng."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0125","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1007\/s11120-017-0429-0","article-title":"The Arnon\u2013Buchanan cycle: a retrospective, 1966\u20132016","volume":"134","author":"Buchanan","year":"2017","journal-title":"Photosynth. Res."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0130","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1016\/j.copbio.2021.07.011","article-title":"Formate dehydrogenases for CO2 utilization","volume":"73","author":"Calzadiaz-Ramirez","year":"2022","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0135","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1186\/s12859-023-05245-9","article-title":"ElasticBLAST: accelerating sequence search via cloud computing","volume":"24","author":"Camacho","year":"2023","journal-title":"BMC Bioinforma."},{"issue":"10","key":"10.1016\/j.biotechadv.2026.108917_bb0140","doi-asserted-by":"crossref","first-page":"6282","DOI":"10.1128\/AEM.70.10.6282-6289.2004","article-title":"Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents","volume":"70","author":"Campbell","year":"2004","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0145","doi-asserted-by":"crossref","first-page":"498","DOI":"10.1093\/nar\/gkaa1025","article-title":"BRENDA, the ELIXIR core data resource in 2021: new developments and updates","volume":"49","author":"Chang","year":"2021","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0150","doi-asserted-by":"crossref","first-page":"2118","DOI":"10.1038\/s41467-023-37490-0","article-title":"Engineering \u03b1-carboxysomes into plant chloroplasts to support autotrophic photosynthesis","volume":"14","author":"Chen","year":"2023","journal-title":"Nat. Commun."},{"issue":"8","key":"10.1016\/j.biotechadv.2026.108917_bb0155","doi-asserted-by":"crossref","first-page":"817","DOI":"10.1016\/j.tibtech.2019.01.003","article-title":"Systems metabolic engineering strategies: integrating systems and synthetic biology with metabolic engineering","volume":"37","author":"Choi","year":"2019","journal-title":"Trends Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0160","doi-asserted-by":"crossref","first-page":"1385","DOI":"10.1038\/s42255-021-00453-0","article-title":"An orthogonal metabolic framework for one-carbon utilization","volume":"3","author":"Chou","year":"2021","journal-title":"Nat. Metab."},{"issue":"4","key":"10.1016\/j.biotechadv.2026.108917_bb0165","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1016\/j.tibtech.2021.02.005","article-title":"Reductive glycine pathway: a versatile route for one-carbon biotech","volume":"39","author":"Claassens","year":"2021","journal-title":"Trends Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0170","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.ymben.2020.08.004","article-title":"Replacing the Calvin cycle with the reductive glycine pathway in Cupriavidus necator","volume":"62","author":"Claassens","year":"2020","journal-title":"Metab. Eng."},{"issue":"36","key":"10.1016\/j.biotechadv.2026.108917_bb0175","doi-asserted-by":"crossref","first-page":"22452","DOI":"10.1073\/pnas.2012288117","article-title":"Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle","volume":"117","author":"Claassens","year":"2020","journal-title":"PNAS"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0180","series-title":"One-Carbon Feedstocks for Sustainable Bioproduction. Advances in Biochemical Engineering\/Biotechnology","article-title":"Engineering the reductive glycine pathway: a promising synthetic metabolism approach for C1-assimilation","volume":"180","author":"Claassens","year":"2022"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0185","article-title":"Natural carbon fixation and advances in synthetic engineering for redesigning and creating new fixation pathways","volume":"75-92","author":"Correa","year":"2023","journal-title":"J. Adv. Res."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0190","doi-asserted-by":"crossref","DOI":"10.1016\/j.biotechadv.2024.108511","article-title":"Carboxysomes: The next frontier in biotechnology and sustainable solutions","volume":"79","author":"Correa","year":"2025","journal-title":"Biotechnol. Adv."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0195","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1016\/j.copbio.2017.07.014","article-title":"Reinforcing carbon fixation: CO2 reduction replacing and supporting carboxylation","volume":"49","author":"Cotton","year":"2018","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0200","doi-asserted-by":"crossref","first-page":"5908","DOI":"10.1038\/s41467-025-61001-y","article-title":"Fast growth and high-titer bioproduction from renewable formate via metal-dependent formate dehydrogenase in Escherichia coli","volume":"16","author":"Cowan","year":"2025","journal-title":"Nat. Commun."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0205","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1111\/1751-7915.13937","article-title":"In vivo, in vitro and in silico: an open space for the development of microbe-based applications of synthetic biology","volume":"15","author":"Danchin","year":"2022","journal-title":"Microb. Biotechnol."},{"issue":"6615","key":"10.1016\/j.biotechadv.2026.108917_bb0210","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1126\/science.add2187","article-title":"Robust deep learning\u2013based protein sequence design using ProteinMPNN","volume":"378","author":"Dauparas","year":"2022","journal-title":"Science"},{"issue":"5","key":"10.1016\/j.biotechadv.2026.108917_bb0215","doi-asserted-by":"crossref","first-page":"911","DOI":"10.1021\/acssynbio.8b00464","article-title":"Core catalysis of the reductive glycine pathway demonstrated in yeast","volume":"8","author":"de la Cruz","year":"2019","journal-title":"ACS Synth. Biol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0220","article-title":"Construction of microbial platform chassis for CO2 utilisation","volume":"37","author":"DellaValle","year":"2024","journal-title":"Curr. Opin. Syst. Biol."},{"issue":"9","key":"10.1016\/j.biotechadv.2026.108917_bb0225","doi-asserted-by":"crossref","first-page":"2029","DOI":"10.1021\/acssynbio.8b00167","article-title":"Implementation of a reductive route of one-carbon assimilation in escherichia coli through directed evolution","volume":"7","author":"Doring","year":"2018","journal-title":"ACS Synth. Biol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0230","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1038\/s41564-025-01941-9","article-title":"One-carbon fixation via the synthetic reductive glycine pathway exceeds yield of the Calvin cycle","volume":"10","author":"Dronsella","year":"2025","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0235","series-title":"Encyclopedia of Caves","article-title":"Chemolithotrophy","author":"Engel","year":"2019"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0240","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1016\/j.copbio.2017.07.017","article-title":"A short history of RubisCO: the rise and fall (?) of Nature's predominant CO2 fixing enzyme","volume":"49","author":"Erb","year":"2018","journal-title":"Curr. Opin. Biotechnol."},{"issue":"25","key":"10.1016\/j.biotechadv.2026.108917_bb0245","first-page":"10631","article-title":"Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase\/reductase: the ethylmalonyl-CoA pathway","volume":"104","author":"Erb","year":"2007","journal-title":"Biol. Sci."},{"issue":"22","key":"10.1016\/j.biotechadv.2026.108917_bb0250","first-page":"8871","article-title":"Carboxylation mechanism and stereochemistry of crotonyl-CoA carboxylase\/reductase, a carboxylating enoyl-thioester reductase","volume":"106","author":"Erb","year":"2009","journal-title":"Biochemistry"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0255","doi-asserted-by":"crossref","first-page":"928","DOI":"10.1073\/pnas.55.4.928","article-title":"A new ferredoxin-dependent carbon reduction cycle in a photosynthetic bacterium","volume":"55","author":"Evans","year":"1966","journal-title":"Proc. Nat. Acad. Sci. USA"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0260","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1016\/j.ymben.2022.05.008","article-title":"Dynamic flux regulation for high-titer anthranilate production by plasmid-free, conditionally-auxotrophic strains of Pseudomonas putida","volume":"73","author":"Fernandez-Cabezon","year":"2022","journal-title":"Metab. Eng."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0265","first-page":"E92","article-title":"Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway","volume":"115","author":"Figueroa","year":"2018","journal-title":"Biol. Sci."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0270","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.173359","article-title":"Greenhouse gases emissions and global climate change: Examining the influence of CO2, CH4 and N2O","volume":"935","author":"Filonchyk","year":"2024","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0275","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.59882","article-title":"Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli","volume":"9","author":"Flamholz","year":"2020","journal-title":"eLife"},{"issue":"49","key":"10.1016\/j.biotechadv.2026.108917_bb0280","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2210539119","article-title":"Trajectories for the evolution of bacterial CO2-concentrating mechanisms","volume":"119","author":"Flamholz","year":"2022","journal-title":"Proc. Nat. Acad. Sci. U.S.A."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0285","doi-asserted-by":"crossref","first-page":"262","DOI":"10.1016\/j.ymben.2021.06.010","article-title":"Engineering Cupriavidus necator H16 for the autotrophic production of (R) 1,3-butanediol","volume":"67","author":"Gascoyne","year":"2021","journal-title":"Metab. Eng."},{"issue":"2","key":"10.1016\/j.biotechadv.2026.108917_bb0290","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1038\/s41587-019-0363-0","article-title":"The industrial yeast Pichia pastoris is converted from a heterotroph into an autotroph capable of growth on CO2","volume":"38","author":"Gassler","year":"2020","journal-title":"Nat. Biotechnol."},{"issue":"4","key":"10.1016\/j.biotechadv.2026.108917_bb0295","first-page":"359","article-title":"Perspectives on improving crop Rubisco by directed evolution","volume":"29","author":"Gionfriddo","year":"2024","journal-title":"Trends Plant Sci."},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0300","doi-asserted-by":"crossref","first-page":"1255","DOI":"10.1016\/j.cell.2019.11.009","article-title":"Conversion of Escherichia coli to generate all biomass carbon from CO2","volume":"179","author":"Gleizer","year":"2019","journal-title":"Cell"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0305","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1016\/j.ymben.2022.02.003","article-title":"Biosensor informed engineering of Cupriavidus necator H16 for autotrophic D-mannitol production","volume":"72","author":"Hanko","year":"2022","journal-title":"Metab. Eng."},{"issue":"4","key":"10.1016\/j.biotechadv.2026.108917_bb0310","first-page":"906","article-title":"Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics","volume":"14","author":"Hao","year":"2020","journal-title":"ISME Multidiscip. J. Microb. Ecol."},{"issue":"8","key":"10.1016\/j.biotechadv.2026.108917_bb0315","doi-asserted-by":"crossref","first-page":"2536","DOI":"10.1128\/AEM.04146-13","article-title":"Conversion of 4-hydroxybutyrate to acetyl coenzyme A and its anapleurosis in the Metallosphaera sedula 3-hydroxypropionate\/4-hydroxybutyrate carbon fixation pathway","volume":"80","author":"Hawkins","year":"2014","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0320","doi-asserted-by":"crossref","first-page":"20277","DOI":"10.1074\/jbc.M201030200","article-title":"A bicyclic autotrophic CO2 fixation pathway in Chloroflexus aurantiacus","volume":"7","author":"Herter","year":"2002","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0325","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1093\/nar\/gkaa372","article-title":"EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities","volume":"48","author":"Hon","year":"2020","journal-title":"Nucleic Acids Res."},{"issue":"22","key":"10.1016\/j.biotechadv.2026.108917_bb0330","doi-asserted-by":"crossref","first-page":"7851","DOI":"10.1073\/pnas.0801043105","article-title":"A dicarboxylate\/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis","volume":"105","author":"Huber","year":"2008","journal-title":"Proc. Nat. Acad. Sci. USA"},{"issue":"9","key":"10.1016\/j.biotechadv.2026.108917_bb0335","doi-asserted-by":"crossref","first-page":"3020","DOI":"10.1128\/JB.187.9.3020-3027.2005","article-title":"Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the \u03b5 subdivision of proteobacteria","volume":"187","author":"Hugler","year":"2005","journal-title":"J. Bacteriol."},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0340","doi-asserted-by":"crossref","first-page":"1392","DOI":"10.1021\/acsearthspacechem.4c00371","article-title":"Thermodynamic constraints on the citric acid cycle and related reactions in ocean world interiors","volume":"9","author":"Isik","year":"2025","journal-title":"ACS Earth Space Chem."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0345","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.mib.2021.11.007","article-title":"Novel computational and experimental approaches for investigating the thermodynamics of metabolic networks","volume":"66","author":"Khana","year":"2022","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0350","doi-asserted-by":"crossref","first-page":"538","DOI":"10.1038\/s41589-020-0473-5","article-title":"Growth of E. coli on formate and methanol via the reductive glycine pathway","volume":"16","author":"Kim","year":"2020","journal-title":"Nat. Chem. Biol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0355","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1186\/s12934-022-01962-7","article-title":"Engineering Cupriavidus necator H16 for enhanced lithoautotrophic poly(3-hydroxybutyrate) production from CO2","volume":"21","author":"Kim","year":"2022","journal-title":"Microb. Cell Factories"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0360","doi-asserted-by":"crossref","DOI":"10.3389\/fbioe.2023.1091899","article-title":"Optimizing E. coli as a formatotrophic platform for bioproduction via the reductive glycine pathway","volume":"11","author":"Kim","year":"2023","journal-title":"Front. Bioeng. Biotechnol."},{"issue":"21","key":"10.1016\/j.biotechadv.2026.108917_bb0365","doi-asserted-by":"crossref","first-page":"6466","DOI":"10.1128\/JB.183.21.6466-6477.2001","article-title":"Acetate and formate stress: opposite responses in the proteome of Escherichia coli","volume":"183","author":"Kirkpatrick","year":"2001","journal-title":"J. Bacteriol."},{"issue":"14","key":"10.1016\/j.biotechadv.2026.108917_bb0370","doi-asserted-by":"crossref","first-page":"4615","DOI":"10.1039\/D0CS00155D","article-title":"Tools and strategies of systems metabolic engineering for the development of microbial cell factories for chemical production","volume":"49","author":"Ko","year":"2020","journal-title":"Chem. Soc. Rev."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0375","doi-asserted-by":"crossref","DOI":"10.1016\/j.chemosphere.2019.124527","article-title":"Electrochemical reduction of carbon dioxide to formate via nano-prism assembled CuO microspheres","volume":"237","author":"Li","year":"2019","journal-title":"Chemosphere"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0380","doi-asserted-by":"crossref","first-page":"228","DOI":"10.1186\/s12934-020-01494-y","article-title":"Engineering the Calvin\u2013Benson\u2013Bassham cycle and hydrogen utilization pathway of Ralstonia eutropha for improved autotrophic growth and polyhydroxybutyrate production","volume":"19","author":"Li","year":"2020","journal-title":"Microb. Cell Factories"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0385","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1186\/s12934-020-01494-y","article-title":"Engineering the Calvin\u2013Benson\u2013Bassham cycle and hydrogen utilisation pathway of Ralstonia eutropha for improved autotrophic growth and polyhydroxybutyrate production","volume":"19","author":"Li","year":"2020","journal-title":"Microb. Cell Factories"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0390","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1038\/s41587-021-01195-w","article-title":"Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale","volume":"40","author":"Liew","year":"2022","journal-title":"Nat. Biotechnol."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0395","doi-asserted-by":"crossref","first-page":"515","DOI":"10.1146\/annurev.mi.23.100169.002503","article-title":"Total synthesis of acetate from CO2 by heterotrophic bacteria","volume":"23","author":"Ljungdahl","year":"1969","journal-title":"Ann. Rev. Microbiol."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0400","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1146\/annurev.mi.40.100186.002215","article-title":"The autotrophic pathway of acetate synthesis in acetogenic bacteria","volume":"40","author":"Ljungdahl","year":"1986","journal-title":"Ann. Rev. Microbiol."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0405","doi-asserted-by":"crossref","first-page":"3570","DOI":"10.1038\/s41467-018-06044-0","article-title":"Carboxysome encapsulation of the CO2-fixing enzyme Rubisco in tobacco chloroplasts","volume":"9","author":"Long","year":"2018","journal-title":"Nat. Commun."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0410","doi-asserted-by":"crossref","first-page":"9898316","DOI":"10.34133\/2021\/9898316","article-title":"In-depth computational analysis of natural and artificial carbon fixation pathways","volume":"2021","author":"Lowe","year":"2021","journal-title":"BioDes. Res."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0415","doi-asserted-by":"crossref","first-page":"1378","DOI":"10.1038\/s41467-019-09095-z","article-title":"Constructing a synthetic pathway for acetyl-coenzyme A from one-carbon through enzyme design","volume":"10","author":"Lu","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0420","doi-asserted-by":"crossref","first-page":"154","DOI":"10.1038\/s41929-022-00746-x","article-title":"A cell-free self-replenishing CO2-fixing system","volume":"5","author":"Luo","year":"2022","journal-title":"Nat. Catalysis"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0425","doi-asserted-by":"crossref","first-page":"1228","DOI":"10.1038\/s41929-023-01079-z","article-title":"Construction and modular implementation of the THETA cycle for synthetic CO2 fixation","volume":"6","author":"Luo","year":"2023","journal-title":"Nat. Catalysis"},{"issue":"6375","key":"10.1016\/j.biotechadv.2026.108917_bb0430","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1126\/science.aao2410","article-title":"Reversibility of citrate synthase allows autotrophic growth of a thermophilic bacterium","volume":"359","author":"Mall","year":"2018","journal-title":"Science"},{"issue":"12","key":"10.1016\/j.biotechadv.2026.108917_bb0435","doi-asserted-by":"crossref","first-page":"3521","DOI":"10.1021\/acssynbio.3c00403","article-title":"Machine learning-supported enzyme engineering toward improved CO2-fixation of glycolyl-CoA carboxylase","volume":"12","author":"Marchal","year":"2023","journal-title":"ACS Synth. Biol."},{"issue":"5809","key":"10.1016\/j.biotechadv.2026.108917_bb0440","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1126\/science.1132913","article-title":"Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila","volume":"315","author":"Markert","year":"2007","journal-title":"Science"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0445","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/978-1-0716-1826-4_7","article-title":"Resurrecting enzymes by ancestral sequence reconstruction","volume":"2397","author":"Mascotti","year":"2022","journal-title":"Methods Mol. Biol."},{"issue":"27","key":"10.1016\/j.biotechadv.2026.108917_bb0450","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2505083122","article-title":"In vivo directed evolution of an ultra-fast Rubisco from a semi-anaerobic environment imparts oxygen resistance","volume":"122","author":"McDonald","year":"2025","journal-title":"Proc. Nat. Acad. Sci. USA"},{"issue":"21","key":"10.1016\/j.biotechadv.2026.108917_bb0455","doi-asserted-by":"crossref","first-page":"7170","DOI":"10.1128\/JB.00747-08","article-title":"A soluble NADH-dependent fumarate reductase in the reductive citric acid cycle of Hydrogenobacter thermophilus TK-6","volume":"190","author":"Miura","year":"2008","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0460","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1038\/s43586-022-00119-5","article-title":"In vivo hypermutation and continuous evolution","volume":"2","author":"Molina","year":"2022","journal-title":"Nat. Rev. Methods Primers"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0465","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1574-6941.2008.00502.x","article-title":"Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance","volume":"65","author":"Nakagawa","year":"2008","journal-title":"FEMS Microbiol. Ecol."},{"issue":"6375","key":"10.1016\/j.biotechadv.2026.108917_bb0470","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1126\/science.aao3407","article-title":"A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile","volume":"359","author":"Nunoura","year":"2018","journal-title":"Science"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0475","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1016\/j.ymben.2015.04.008","article-title":"Metabolic engineering in chemolithoautotrophic hosts for the production of fuels and chemicals","volume":"30","author":"Nybo","year":"2015","journal-title":"Metab. Eng."},{"issue":"3","key":"10.1016\/j.biotechadv.2026.108917_bb0480","doi-asserted-by":"crossref","first-page":"572","DOI":"10.1016\/j.tibtech.2024.08.014","article-title":"Bringing carbon to life via one-carbon metabolism","volume":"43","author":"O\u2019Keeffe","year":"2025","journal-title":"Trends Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0485","doi-asserted-by":"crossref","first-page":"5295","DOI":"10.1038\/s41467-021-25665-6","article-title":"Growth-coupled selection of synthetic modules to accelerate cell factory development","volume":"12","author":"Orsi","year":"2021","journal-title":"Nat. Commun."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0490","doi-asserted-by":"crossref","first-page":"3447","DOI":"10.1038\/s41467-024-46574-4","article-title":"Automated in vivo enzyme engineering accelerates biocatalyst optimization","volume":"15","author":"Orsi","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0495","doi-asserted-by":"crossref","DOI":"10.1016\/j.biortech.2024.131214","article-title":"Functional plasticity of HCO3- uptake and CO2 fixation in Cupriavidus necator H16","volume":"410","author":"Panich","year":"2024","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0500","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1016\/j.ymben.2022.01.015","article-title":"Advances in systems metabolic engineering of autotrophic carbon oxide-fixing biocatalysts towards a circular economy","volume":"71","author":"Pavan","year":"2022","journal-title":"Metab. Eng."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0505","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1186\/s13036-025-00489-w","article-title":"Carbon fluxes rewiring in engineered E. coli via reverse tricarboxylic acid cycle pathway under chemolithotrophic condition","volume":"19","author":"Peng","year":"2025","journal-title":"J. Biol. Eng."},{"issue":"45","key":"10.1016\/j.biotechadv.2026.108917_bb0510","doi-asserted-by":"crossref","first-page":"13457","DOI":"10.1002\/anie.201505282","article-title":"Screening and engineering the synthetic potential of carboxylating reductases from central metabolism and polyketide biosynthesis","volume":"54","author":"Peter","year":"2015","journal-title":"Angewandte Chemie Int."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0515","doi-asserted-by":"crossref","first-page":"4571","DOI":"10.1021\/jacsau.4c00653","article-title":"Ancestral sequence reconstruction for designing biocatalysts and investigating their functional mechanisms","volume":"4","author":"Prakinee","year":"2024","journal-title":"JACS Au"},{"issue":"7","key":"10.1016\/j.biotechadv.2026.108917_bb0520","doi-asserted-by":"crossref","first-page":"1441","DOI":"10.1093\/jxb\/erm112","article-title":"Advances in understanding the cyanobacterial CO2 concentrating mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants","volume":"59","author":"Price","year":"2008","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0525","article-title":"Efficient implementation of the reductive acetyl-CoA pathway has been primarily achieved in obligate anaerobes or specially engineered facultative hosts. The pathway\u2019s integration into a broader range of microbial hosts, including those with aerobic capab","volume":"49","author":"Puiggene","year":"2025","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0530","doi-asserted-by":"crossref","DOI":"10.3389\/fbioe.2021.612893","article-title":"Multiomics data collection, visualization, and utilization for guiding metabolic engineering","volume":"9","author":"Roy","year":"2021","journal-title":"Front. Bioeng. Biotechnol."},{"issue":"7","key":"10.1016\/j.biotechadv.2026.108917_bb0535","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1016\/j.tibs.2004.05.007","article-title":"The rocky roots of the acetyl-CoA pathway","volume":"29","author":"Russel","year":"2004","journal-title":"Trends Biochem. Sci."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0540","doi-asserted-by":"crossref","first-page":"5090","DOI":"10.1038\/s41467-020-18906-7","article-title":"The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans","volume":"11","author":"S\u00e1nchez-Andrea","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0545","doi-asserted-by":"crossref","first-page":"200","DOI":"10.1016\/j.ymben.2019.04.005","article-title":"Functional implementation of a linear glycolysis for sugar catabolism in Pseudomonas putida","volume":"54","author":"Sanchez-Pascuala","year":"2019","journal-title":"Metab. Eng."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0550","doi-asserted-by":"crossref","first-page":"5812","DOI":"10.1038\/s41467-020-19564-5","article-title":"Awakening a latent carbon fixation pathway in Escherichia coli","volume":"11","author":"Satanowski","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0555","doi-asserted-by":"crossref","first-page":"3134","DOI":"10.1038\/s41467-025-57549-4","article-title":"Design and implementation of aerobic and ambient CO2-reduction as an entry-point for enhanced carbon fixation","volume":"16","author":"Satanowski","year":"2025","journal-title":"Nat. Commun."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0560","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1007\/BF00444674","article-title":"Oxidative and reductive acetyl CoA\/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum 2. Demonstration of the enzymes of the pathway and comparison of CO dehydrogenase","volume":"151","author":"Schauder","year":"1989","journal-title":"Arch. Microbiol."},{"issue":"13","key":"10.1016\/j.biotechadv.2026.108917_bb0565","doi-asserted-by":"crossref","first-page":"6329","DOI":"10.1073\/pnas.1818580116","article-title":"Energy conservation by a hydrogenase-dependent chemiosmotic mechanism in an ancient metabolic pathway","volume":"116","author":"Schoelmerich","year":"2019","journal-title":"Proc. Natl. Acad. Sci. USA"},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0570","doi-asserted-by":"crossref","first-page":"3785","DOI":"10.1128\/AEM.70.6.3785-3788.2004","article-title":"Stable carbon isotopic fractionations associated with inorganic carbon fixation by anaerobic ammonium-oxidizing bacteria","volume":"70","author":"Schouten","year":"2004","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0575","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1016\/j.ymben.2023.12.012","article-title":"Creating new-to-nature carbon fixation: a guide","volume":"82","author":"Schulz-Mirbach","year":"2024","journal-title":"Metab. Eng."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0580","doi-asserted-by":"crossref","first-page":"6725","DOI":"10.1038\/s41467-024-51029-x","article-title":"Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules","volume":"15","author":"Schulz-Mirbach","year":"2024","journal-title":"Nat. Commun."},{"issue":"6314","key":"10.1016\/j.biotechadv.2026.108917_bb0585","doi-asserted-by":"crossref","first-page":"900","DOI":"10.1126\/science.aah5237","article-title":"A synthetic pathway for the fixation of carbon dioxide in vitro","volume":"354","author":"Schwander","year":"2016","journal-title":"Science"},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bib776","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1186\/s13068-018-1236-3","article-title":"Hydrogenation of CO2 at ambient pressure catalyzed by a highly active thermostable biocatalyst","volume":"11","author":"Schwarz","year":"2018","journal-title":"Biotechnol. Biofuels"},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0590","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1016\/j.enpol.2008.08.016","article-title":"When will fossil fuel reserves be diminished?","volume":"37","author":"Shafiee","year":"2009","journal-title":"Energy Policy"},{"issue":"40","key":"10.1016\/j.biotechadv.2026.108917_bb0595","first-page":"10749","article-title":"Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi","volume":"114","author":"Shih","year":"2017","journal-title":"Biol. Sci."},{"issue":"12","key":"10.1016\/j.biotechadv.2026.108917_bb0600","doi-asserted-by":"crossref","first-page":"3704","DOI":"10.1073\/pnas.1500545112","article-title":"Computational protein design enables a novel one-carbon assimilation pathway","volume":"112","author":"Siegel","year":"2015","journal-title":"PNAS"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0605","doi-asserted-by":"crossref","first-page":"784","DOI":"10.1038\/s41586-021-03456-9","article-title":"High CO2 levels drive the TCA cycle backwards towards autotrophy","volume":"592","author":"Steffens","year":"2021","journal-title":"Nature"},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0610","article-title":"Tracking the reversed oxidative tricarboxylic acid cycle in bacteria","volume":"12","author":"Steffens","year":"2022","journal-title":"Bio Protoc"},{"issue":"3","key":"10.1016\/j.biotechadv.2026.108917_bb0615","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1111\/j.1432-1033.1993.tb18074.x","article-title":"Enzymes of a novel autotrophic CO2 fixation pathway in the phototrophic bacterium Chloroflexus aurantiacus, the 3-hydroxypropionate cycle","volume":"215","author":"Strauss","year":"1993","journal-title":"Eur. J. Biochem."},{"issue":"3","key":"10.1016\/j.biotechadv.2026.108917_bb0620","doi-asserted-by":"crossref","first-page":"2054","DOI":"10.1021\/jacs.3c10941","article-title":"Improving protein expression, stability, and function with ProteinMPNN","volume":"146","author":"Sumida","year":"2024","journal-title":"J. Am. Chem. Soc."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0625","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1016\/j.ymben.2017.10.006","article-title":"Metabolite damage and repair in metabolic engineering design","volume":"44","author":"Sun","year":"2017","journal-title":"Metab. Eng."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0630","doi-asserted-by":"crossref","DOI":"10.1016\/j.biotechadv.2023.108183","article-title":"Problems and corresponding strategies for converting CO2 into value-added products in Cupriavidus necator H16 cell factories","volume":"67","author":"Tang","year":"2023","journal-title":"Biotechnol. Adv."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0635","doi-asserted-by":"crossref","first-page":"1153","DOI":"10.1038\/s41396-021-01163-x","article-title":"Bolstering fitness via CO2 fixation and organic carbon uptake: mixotrophs in modern groundwater","volume":"16","author":"Taubert","year":"2022","journal-title":"ISME J."},{"issue":"19","key":"10.1016\/j.biotechadv.2026.108917_bb0640","doi-asserted-by":"crossref","first-page":"7246","DOI":"10.1073\/pnas.0600605103","article-title":"Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized","volume":"103","author":"Tcherkez","year":"2006","journal-title":"Proc. Nat. Acad. Sci.USA"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0645","doi-asserted-by":"crossref","DOI":"10.1016\/j.copbio.2022.102696","article-title":"Biosensor-enabled pathway optimization in metabolic engineering","volume":"75","author":"Teng","year":"2022","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0650","series-title":"Encyclopedia of Microbiology","first-page":"80","article-title":"Deep-sea hydrothermal vents","author":"Teske","year":"2009"},{"issue":"19","key":"10.1016\/j.biotechadv.2026.108917_bb0655","doi-asserted-by":"crossref","first-page":"4592","DOI":"10.1111\/gcb.15804","article-title":"Elevated atmospheric CO2 adversely affects a dung beetle\u2019s development: Another potential driver of decline in insect numbers?","volume":"27","author":"Tocco","year":"2021","journal-title":"Glob. Chang. Biol."},{"issue":"6","key":"10.1016\/j.biotechadv.2026.108917_bb0660","doi-asserted-by":"crossref","first-page":"730","DOI":"10.1016\/j.jbiosc.2018.06.005","article-title":"Function of three RuBisCO enzymes under different CO2 conditions in Hydrogenovibrio marinus","volume":"126","author":"Toyoda","year":"2018","journal-title":"J. Biosci. Bioeng."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0665","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1016\/j.ymben.2022.10.008","article-title":"Integrated rational and evolutionary engineering of genome-reduced Pseudomonas putida strains promotes synthetic formate assimilation","volume":"74","author":"Turlin","year":"2022","journal-title":"Metab. Eng."},{"issue":"18","key":"10.1016\/j.biotechadv.2026.108917_bb0670","doi-asserted-by":"crossref","DOI":"10.1093\/femsle\/fnx176","article-title":"Carboxysomes: metabolic modules for CO2 fixation","volume":"364","author":"Turmo","year":"2017","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0675","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/bs.mie.2025.01.079","article-title":"Enzyme expression in Cupriavidus necator H16 for whole-cell biocatalysis","volume":"714","author":"Vajente","year":"2025","journal-title":"Methods Enzymol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0680","doi-asserted-by":"crossref","first-page":"1437","DOI":"10.1016\/j.spc.2021.02.018","article-title":"Principles for a sustainable circular economy","volume":"27","author":"Velenturf","year":"2021","journal-title":"Sustainable Prod. Consumption"},{"issue":"11","key":"10.1016\/j.biotechadv.2026.108917_bb0685","doi-asserted-by":"crossref","first-page":"1800111","DOI":"10.1002\/adbi.201800111","article-title":"Getting bacteria in shape: synthetic morphology approaches for the design of efficient microbial cell factories","volume":"2","author":"Volke","year":"2018","journal-title":"Adv. Biosyst."},{"issue":"3","key":"10.1016\/j.biotechadv.2026.108917_bb0690","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1016\/j.tibtech.2015.11.002","article-title":"Metabolic engineering of TCA cycle for production of chemicals","volume":"34","author":"Vuoristo","year":"2016","journal-title":"Trends Biotechnol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0695","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1146\/annurev-arplant-043015-111709","article-title":"The costs of photorespiration to food production now and in the future","volume":"67","author":"Walker","year":"2016","journal-title":"Annu. Rev. Plant Biol."},{"issue":"21","key":"10.1016\/j.biotechadv.2026.108917_bb0700","doi-asserted-by":"crossref","first-page":"7109","DOI":"10.1128\/jb.175.21.7109-7114.1993","article-title":"Photolithoautotrophic growth and control of CO2 fixation in Rhodobacter sphaeroides and Rhodospirillum rubrum in the absence of ribulose bisphosphate carboxylase-oxygenase","volume":"175","author":"Wang","year":"1993","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0705","doi-asserted-by":"crossref","DOI":"10.1016\/j.catena.2021.105418","article-title":"Abundance and diversity of carbon-fixing bacterial communities in karst wetland soil ecosystems","volume":"204","author":"Wang","year":"2021","journal-title":"CATENA"},{"issue":"7","key":"10.1016\/j.biotechadv.2026.108917_bb0710","doi-asserted-by":"crossref","DOI":"10.1002\/cbic.202100697","article-title":"Engineering formaldehyde dehydrogenase from Pseudomonas putida to favor nicotinamide cytosine dinucleotide","volume":"23","author":"Wang","year":"2022","journal-title":"ChemBioChem"},{"issue":"38","key":"10.1016\/j.biotechadv.2026.108917_bb0715","doi-asserted-by":"crossref","first-page":"15817","DOI":"10.1021\/acssuschemeng.5c03359","article-title":"Engineering of an evolved artificial formolase enzyme to facilitate in vivo synthetic C1 metabolism","volume":"13","author":"Wegat","year":"2025","journal-title":"ACS Sustain. Chem. Eng."},{"issue":"9","key":"10.1016\/j.biotechadv.2026.108917_bb0720","doi-asserted-by":"crossref","DOI":"10.1016\/j.isci.2020.101471","article-title":"Applying non-canonical redox cofactors in fermentation processes","volume":"23","author":"Weusthuis","year":"2020","journal-title":"iScience"},{"issue":"4","key":"10.1016\/j.biotechadv.2026.108917_bb0725","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1038\/nchem.2459","article-title":"Substrate channelling as an approach to cascade reactions","volume":"8","author":"Wheeldon","year":"2016","journal-title":"Nat. Chem."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0730","doi-asserted-by":"crossref","first-page":"1178536","DOI":"10.3389\/fbioe.2023.1178536","article-title":"Improving carbon monoxide tolerance of Cupriavidus necator H16 through adaptive laboratory evolution","volume":"11","author":"Wickham-Smith","year":"2023","journal-title":"Front. Bioeng. Biotechnol."},{"issue":"2","key":"10.1016\/j.biotechadv.2026.108917_bb0735","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1111\/j.1574-6968.2006.00415.x","article-title":"Role of two 2-oxoglutarate:ferredoxin oxidoreductases in Hydrogenobacter thermophilus under aerobic and anaerobic conditions","volume":"263","author":"Yamamoto","year":"2006","journal-title":"FEMS Microbiol. Lett."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0740","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1007\/s00792-009-0289-4","article-title":"Carboxylation reaction catalyzed by 2-oxoglutarate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus","volume":"14","author":"Yamamoto","year":"2010","journal-title":"Extremophiles"},{"key":"10.1016\/j.biotechadv.2026.108917_bb0745","doi-asserted-by":"crossref","first-page":"2023","DOI":"10.1021\/acssynbio.8b00131","article-title":"In vivo assimilation of one-carbon via a synthetic reductive glycine pathway in Escherichia coli","volume":"7","author":"Yishai","year":"2018","journal-title":"ACS Synth. Biol."},{"issue":"1","key":"10.1016\/j.biotechadv.2026.108917_bb0750","first-page":"1","article-title":"Augmenting the Calvin-Benson-Bassham cycle by a synthetic malyl CoA GLYCERATE CARBON FIXATION PATHWAY","volume":"9","author":"Yu","year":"2018","journal-title":"Nat. Commun."},{"issue":"50","key":"10.1016\/j.biotechadv.2026.108917_bb0755","first-page":"21317","article-title":"Identifying the missing steps of the autotrophic 3-hydroxypropionate CO2 fixation cycle in Chloroflexus aurantiacus","volume":"106","author":"Zarzycki","year":"2009","journal-title":"Biol. Sci."},{"issue":"8","key":"10.1016\/j.biotechadv.2026.108917_bb0760","doi-asserted-by":"crossref","first-page":"888","DOI":"10.1016\/j.tibtech.2020.01.001","article-title":"High-throughput screening technology in industrial biotechnology","volume":"38","author":"Zeng","year":"2020","journal-title":"Trends Biotechnol."},{"issue":"8","key":"10.1016\/j.biotechadv.2026.108917_bb0765","first-page":"2078","article-title":"The hidden chemolithoautotrophic metabolism of Geobacter sulfurreducens uncovered by adaptation to formate","volume":"14","author":"Zhang","year":"2020","journal-title":"ISME Multidiscip. J. Microb. Ecol."},{"key":"10.1016\/j.biotechadv.2026.108917_bb0770","doi-asserted-by":"crossref","first-page":"1163","DOI":"10.1016\/j.rser.2017.03.065","article-title":"Biomitigation of carbon dioxide using microalgal systems: advances and perspectives","volume":"76","author":"Zhou","year":"2017","journal-title":"Renew. Sust. Energ. Rev."},{"issue":"9","key":"10.1016\/j.biotechadv.2026.108917_bb0775","doi-asserted-by":"crossref","first-page":"884","DOI":"10.1016\/j.tim.2024.02.006","article-title":"Mutagenesis techniques for evolutionary engineering of microbes \u2013 exploiting CRISPR-Cas, oligonucleotides, recombinases, and polymerases","volume":"32","author":"Zimmermann","year":"2024","journal-title":"Trends Microbiol."}],"container-title":["Biotechnology Advances"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0734975026001230?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0734975026001230?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,7,20]],"date-time":"2026-07-20T08:08:26Z","timestamp":1784534906000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0734975026001230"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":156,"alternative-id":["S0734975026001230"],"URL":"https:\/\/doi.org\/10.1016\/j.biotechadv.2026.108917","relation":{},"ISSN":["0734-9750"],"issn-type":[{"value":"0734-9750","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Metabolism and engineering of chemolithoautotrophic bacteria for carbon dioxide fixation","name":"articletitle","label":"Article Title"},{"value":"Biotechnology Advances","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.biotechadv.2026.108917","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier Inc. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"108917"}}