{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,30]],"date-time":"2026-10-30T12:31:53Z","timestamp":1793363513404,"version":"4.5.0"},"reference-count":114,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2027,3,1]],"date-time":"2027-03-01T00:00:00Z","timestamp":1803859200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2027,3,1]],"date-time":"2027-03-01T00:00:00Z","timestamp":1803859200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2027,3,1]],"date-time":"2027-03-01T00:00:00Z","timestamp":1803859200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2027,3,1]],"date-time":"2027-03-01T00:00:00Z","timestamp":1803859200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2027,3,1]],"date-time":"2027-03-01T00:00:00Z","timestamp":1803859200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2027,3,1]],"date-time":"2027-03-01T00:00:00Z","timestamp":1803859200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2027,3,1]],"date-time":"2027-03-01T00:00:00Z","timestamp":1803859200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Comparative Biochemistry and Physiology Part D: Genomics and Proteomics"],"published-print":{"date-parts":[[2027,3]]},"DOI":"10.1016\/j.cbd.2026.102024","type":"journal-article","created":{"date-parts":[[2026,9,13]],"date-time":"2026-09-13T14:17:23Z","timestamp":1789309043000},"page":"102024","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":1,"special_numbering":"C","title":["From dysbiosis to resilience: Microbiome engineering for sustainable shrimp aquaculture"],"prefix":"10.1016","volume":"61","author":[{"given":"Safdar","family":"Imran","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yasmeen","family":"Junejo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hafiz Ishfaq","family":"Ahmad","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mehmet","family":"Ozaslan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Muhammad","family":"Safdar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.cbd.2026.102024_bb0005","article-title":"The fate of probiotic species applied in intensive grow-out ponds in rearing water and intestinal tracts of white shrimp, Litopenaeus vannamei","volume":"8","author":"Amin","year":"2023","journal-title":"Open Agric."},{"key":"10.1016\/j.cbd.2026.102024_bb0010","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0261289","article-title":"Experimental reproduction of white feces syndrome in whiteleg shrimp, Penaeus vannamei","volume":"16","author":"Aranguren Caro","year":"2021","journal-title":"PLoS One"},{"key":"10.1016\/j.cbd.2026.102024_bb0015","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2021.736957","article-title":"Effect of oxytetracycline on the biosafety, gut microbial diversity, immune gene expression and withdrawal period in Pacific whiteleg shrimp, Penaeus vannamei","volume":"543","author":"Avunje","year":"2021","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0020","doi-asserted-by":"crossref","DOI":"10.1016\/j.fsi.2023.108882","article-title":"Dietary administration of a postbiotic, heat-killed Pediococcus pentosaceus PP4012 enhances growth performance, immune response and modulates intestinal microbiota of white shrimp, Penaeus vannamei","volume":"139","author":"Ballantyne","year":"2023","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0025","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.173384","article-title":"Changes of bacterial communities and bile acid metabolism reveal the potential \u201cintestine\u2013hepatopancreas axis\u201d in shrimp","volume":"938","author":"Bao","year":"2024","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.cbd.2026.102024_bb0030","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2023.739829","article-title":"Microbiome analysis of Litopenaeus vannamei reveals Vibrio as main risk factor of white feces syndrome","volume":"576","author":"Boopathi","year":"2023","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0035","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2022.738132","article-title":"In sickness and in health: insights into the application of omics in aquaculture settings under a microbiological perspective","volume":"554","author":"Canellas","year":"2022","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0040","doi-asserted-by":"crossref","DOI":"10.1016\/j.envint.2019.05.042","article-title":"Impact of nano-sized plastic on the nutritional value and gut microbiota of whiteleg shrimp Litopenaeus vannamei via dietary exposure","volume":"130","author":"Chae","year":"2019","journal-title":"Environ. Int."},{"key":"10.1016\/j.cbd.2026.102024_bb0045","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2026.744322","article-title":"Synthetic bacterial communities confer protection against Vibrio parahaemolyticus infection via nutrient competition in Penaeus vannamei","volume":"625","author":"Chen","year":"2026","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0050","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.5382","article-title":"A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota","volume":"6","author":"Cornejo-Granados","year":"2018","journal-title":"PeerJ"},{"key":"10.1016\/j.cbd.2026.102024_bb0055","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1186\/s42523-025-00414-y","article-title":"Host genome drives the microbiota enrichment of beneficial microbes in shrimp: exploring the hologenome perspective","volume":"7","author":"Cornejo-Granados","year":"2025","journal-title":"Animal Microbiome"},{"key":"10.1016\/j.cbd.2026.102024_bb0060","doi-asserted-by":"crossref","first-page":"11783","DOI":"10.1038\/s41598-017-11805-w","article-title":"Microbiome of Pacific whiteleg shrimp reveals differential bacterial community composition between wild, aquacultured and AHPND\/EMS outbreak conditions","volume":"7","author":"Cornejo-Granados","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.cbd.2026.102024_bb0065","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2019.734802","article-title":"Shrimp disease progression increases the gut bacterial network complexity and abundances of keystone taxa","volume":"517","author":"Dai","year":"2020","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0070","doi-asserted-by":"crossref","first-page":"8007","DOI":"10.1007\/s00253-020-10816-4","article-title":"White spot syndrome virus (WSSV) disturbs the intestinal microbiota of shrimp (Penaeus vannamei) reared in biofloc and clear seawater","volume":"104","author":"de Souza Valente","year":"2020","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.cbd.2026.102024_bb0075","doi-asserted-by":"crossref","first-page":"4241","DOI":"10.1007\/s00253-019-09773-4","article-title":"Effect of stock density on the microbial community in biofloc water and Pacific white shrimp (Litopenaeus vannamei) gut microbiota","volume":"103","author":"Deng","year":"2019","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.cbd.2026.102024_bb0080","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2020.736199","article-title":"Gastrointestinal microbiota imbalance is triggered by the enrichment of Vibrio in subadult Litopenaeus vannamei with acute hepatopancreatic necrosis disease","volume":"533","author":"Dong","year":"2021","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0085","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1186\/s42523-021-00152-x","article-title":"Enterococcus faecium are associated with the modification of gut microbiota and shrimp post-larvae survival","volume":"3","author":"Du","year":"2021","journal-title":"Animal Microbiome"},{"key":"10.1016\/j.cbd.2026.102024_bb0090","doi-asserted-by":"crossref","DOI":"10.1016\/j.fsi.2025.110893","article-title":"Integrated metabolome-SNP-gut microbiome analysis deciphers the molecular basis of EHP resistance in Penaeus vannamei","volume":"167","author":"Du","year":"2025","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0095","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2023.122762","article-title":"The adverse impacts of ammonia stress on the homeostasis of intestinal health in Pacific white shrimp (Litopenaeus vannamei)","volume":"340","author":"Duan","year":"2024","journal-title":"Environ. Pollut."},{"key":"10.1016\/j.cbd.2026.102024_bb0100","doi-asserted-by":"crossref","first-page":"741","DOI":"10.1007\/s12275-020-0053-0","article-title":"Changes in the microbial community of Litopenaeus vannamei larvae and rearing water during different growth stages after disinfection treatment of hatchery water","volume":"58","author":"Duan","year":"2020","journal-title":"J. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0105","doi-asserted-by":"crossref","DOI":"10.1016\/j.marpolbul.2021.112220","article-title":"Toxic effects of cadmium and lead exposure on intestinal histology, oxidative stress response, and microbial community of Pacific white shrimp Litopenaeus vannamei","volume":"167","author":"Duan","year":"2021","journal-title":"Mar. Pollut. Bull."},{"key":"10.1016\/j.cbd.2026.102024_bb0110","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.141867","article-title":"Toxic effects of ammonia and thermal stress on the intestinal microbiota and transcriptomic and metabolomic responses of Litopenaeus vannamei","volume":"754","author":"Duan","year":"2021","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.cbd.2026.102024_bb0115","doi-asserted-by":"crossref","first-page":"2061","DOI":"10.1007\/s10811-020-02072-w","article-title":"Changes on the intestinal bacterial community of white shrimp Penaeus vannamei fed with green seaweeds","volume":"32","author":"Elizondo-Gonz\u00e1lez","year":"2020","journal-title":"J. Appl. Phycol."},{"key":"10.1016\/j.cbd.2026.102024_bb0120","doi-asserted-by":"crossref","first-page":"734","DOI":"10.1038\/s41598-018-37042-3","article-title":"Dynamics of the gut microbiota in developmental stages of Litopenaeus vannamei reveal its association with body weight","volume":"9","author":"Fan","year":"2019","journal-title":"Sci. Rep."},{"key":"10.1016\/j.cbd.2026.102024_bb0125","series-title":"The state of world fisheries and aquaculture 2024: blue transformation in action","author":"Food and Agriculture Organization of the United Nations (FAO)","year":"2024"},{"key":"10.1016\/j.cbd.2026.102024_bb0130","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2023.740375","article-title":"Sucrose-based biofloc system promotes the enrichment of specific gut bacterial taxa to enhance disease suppression in shrimp (Penaeus vannamei)","volume":"580","author":"Fu","year":"2024","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0135","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2019.734842","article-title":"Taxonomic and functional changes in the microbiota of the white shrimp (Litopenaeus vannamei) associated with postlarval ontogenetic development","volume":"518","author":"Garibay-Valdez","year":"2020","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0140","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1186\/s40168-023-01663-2","article-title":"Gut bacterial consortium enriched in a biofloc system protects shrimp against Vibrio parahaemolyticus infection","volume":"11","author":"Guo","year":"2023","journal-title":"Microbiome"},{"key":"10.1016\/j.cbd.2026.102024_bb0145","doi-asserted-by":"crossref","DOI":"10.3389\/fmars.2022.975042","article-title":"How a holobiome perspective could promote intensification, biosecurity and eco-efficiency in the shrimp aquaculture industry","volume":"9","author":"Guti\u00e9rrez-P\u00e9rez","year":"2022","journal-title":"Front. Mar. Sci."},{"key":"10.1016\/j.cbd.2026.102024_bb0150","doi-asserted-by":"crossref","DOI":"10.1016\/j.jip.2020.107387","article-title":"Understanding the role of the shrimp gut microbiome in health and disease","volume":"186","author":"Holt","year":"2021","journal-title":"J. Invertebr. Pathol."},{"key":"10.1016\/j.cbd.2026.102024_bb0155","doi-asserted-by":"crossref","first-page":"3336","DOI":"10.1111\/are.15178","article-title":"Dysbiosis of the shrimp (Penaeus monodon) gut microbiome with AHPND outbreaks revealed by 16S rRNA metagenomics analysis","volume":"52","author":"Hossain","year":"2021","journal-title":"Aquac. Res."},{"key":"10.1016\/j.cbd.2026.102024_bb0160","doi-asserted-by":"crossref","first-page":"3701","DOI":"10.1007\/s00253-018-8855-2","article-title":"Intestinal bacterial signatures of white feces syndrome in shrimp","volume":"102","author":"Hou","year":"2018","journal-title":"Appl. Microbiol. Biotechnol."},{"issue":"1","key":"10.1016\/j.cbd.2026.102024_bb5020","doi-asserted-by":"crossref","first-page":"194","DOI":"10.1111\/anu.12843","article-title":"Effects of fructooligosaccharide on growth, immunity and intestinal microbiota of shrimp (Litopenaeus vannamei) fed diets with fish meal partially replaced by soybean meal","volume":"25","author":"Hu","year":"2019","journal-title":"Aquac. Nutr."},{"key":"10.1016\/j.cbd.2026.102024_bb0165","doi-asserted-by":"crossref","first-page":"8585","DOI":"10.1007\/s00253-018-9229-5","article-title":"Microbiota assemblages of water, sediment, and intestine and their associations with environmental factors and shrimp physiological health","volume":"102","author":"Huang","year":"2018","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.cbd.2026.102024_bb0170","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2024.740992","article-title":"Adaptability of commercial probiotics to biofloc system: influences on autochthonal bacterial community, water quality and growth performance of shrimp (Litopenaeus vannamei)","volume":"590","author":"Huang","year":"2024","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0175","doi-asserted-by":"crossref","DOI":"10.1186\/s40168-020-00802-3","article-title":"Microecological Koch\u2019s postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome","volume":"8","author":"Huang","year":"2020","journal-title":"Microbiome"},{"key":"10.1016\/j.cbd.2026.102024_bb0180","doi-asserted-by":"crossref","first-page":"391","DOI":"10.1016\/j.aquaculture.2018.12.055","article-title":"Addition of commercial probiotic in a biofloc shrimp farm of Litopenaeus vannamei during the nursery phase: effect on bacterial diversity using massive sequencing 16S rRNA","volume":"502","author":"Huerta-R\u00e1bago","year":"2019","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0185","doi-asserted-by":"crossref","first-page":"9936","DOI":"10.1038\/s41598-021-89415-w","article-title":"Analysis of microbiota in the stomach and midgut of two penaeid shrimps during probiotic feeding","volume":"11","author":"Imaizumi","year":"2021","journal-title":"Sci. Rep."},{"key":"10.1016\/j.cbd.2026.102024_bb0190","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1016\/j.fsi.2019.06.020","article-title":"Individual and combined effects of ammonia-N and sulfide on the immune function and intestinal microbiota of Pacific white shrimp Litopenaeus vannamei","volume":"92","author":"Jiang","year":"2019","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0195","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1093\/jcbiol\/ruz087","article-title":"Absence of a microbiome in the midgut trunk of six representative Crustacea","volume":"40","author":"J\u00f8rgensen","year":"2020","journal-title":"J. Crustac. Biol."},{"key":"10.1016\/j.cbd.2026.102024_bb0200","article-title":"Probiotics, prebiotics, and synbiotics in shrimp aquaculture: their effects on growth performance, immune responses, and gut microbiome","volume":"38","author":"Khanjani","year":"2024","journal-title":"Aquacult. Rep."},{"key":"10.1016\/j.cbd.2026.102024_bb0205","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2024.741338","article-title":"Contaminants in shrimp probiotics \u2013 a potential emerging threat to food security","volume":"593","author":"Knipe","year":"2024","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0210","doi-asserted-by":"crossref","DOI":"10.1016\/j.fsi.2023.108886","article-title":"Resilience and probiotic interventions to prevent and recover from shrimp gut dysbiosis","volume":"139","author":"Kumar","year":"2023","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0215","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms7040093","article-title":"Impact of aquaculture practices on intestinal bacterial profiles of Pacific whiteleg shrimp Litopenaeus vannamei","volume":"7","author":"Landsman","year":"2019","journal-title":"Microorganisms"},{"key":"10.1016\/j.cbd.2026.102024_bb0220","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms7080217","article-title":"Investigation of the potential effects of host genetics and probiotic treatment on the gut bacterial community composition of aquaculture-raised Pacific whiteleg shrimp, Litopenaeus vannamei","volume":"7","author":"Landsman","year":"2019","journal-title":"Microorganisms"},{"key":"10.1016\/j.cbd.2026.102024_bb0225","doi-asserted-by":"crossref","first-page":"482","DOI":"10.1016\/j.fsi.2022.06.071","article-title":"Dietary SYNSEA probiotic improves the growth of white shrimp, Litopenaeus vannamei and reduces the risk of Vibrio infection via improving immunity and intestinal microbiota of shrimp","volume":"127","author":"Lee","year":"2022","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0230","article-title":"Investigating the impact of varied dietary protein levels on Litopenaeus vannamei: an exploration of the intestinal microbiota and transcriptome responses","volume":"14","author":"Li","year":"2024","journal-title":"Animals\u202f: an open access journal from MDPI"},{"key":"10.1016\/j.cbd.2026.102024_bb5010","doi-asserted-by":"crossref","first-page":"735118","DOI":"10.1016\/j.aquaculture.2020.735118","article-title":"Hypoimmunity and intestinal bacterial imbalance are closely associated with blue body syndrome in cultured Penaeus vannamei","volume":"522","author":"Liang","year":"2020","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0235","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2020.735958","article-title":"Effect of rice bran fermented with Bacillus and Lysinibacillus species on dynamic microbial activity of Pacific white shrimp (Penaeus vannamei)","volume":"531","author":"Li\u00f1an-Vidriales","year":"2021","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb5005","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1016\/j.aquaculture.2019.03.031","article-title":"Biofloc formation improves water quality and fish yield in a freshwater pond aquaculture system","volume":"506","author":"Liu","year":"2019","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0240","doi-asserted-by":"crossref","first-page":"1443","DOI":"10.1007\/s00248-022-02118-1","article-title":"A broad-host-range phage cocktail selectively and effectively eliminates Vibrio species from shrimp aquaculture environment","volume":"86","author":"Lomel\u00ed-Ortega","year":"2023","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.cbd.2026.102024_bb0245","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.148760","article-title":"Responses of sediment resistome, virulence factors and potential pathogens to decades of antibiotics pollution in a shrimp aquafarm","volume":"794","author":"Lu","year":"2021","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.cbd.2026.102024_bb0250","doi-asserted-by":"crossref","first-page":"401","DOI":"10.24272\/j.issn.2095-8137.2024.411","article-title":"Pathogenic mechanisms of Enterocytozoon hepatopenaei through the parasite\u2013gut microbiome\u2013shrimp physiology axis","volume":"46","author":"Lu","year":"2025","journal-title":"Zool. Res."},{"key":"10.1016\/j.cbd.2026.102024_bb0255","doi-asserted-by":"crossref","DOI":"10.1016\/j.micres.2024.127693","article-title":"Responses of growth performance, immunity, disease resistance of shrimp and microbiota in Penaeus vannamei culture system to Bacillus subtilis BSXE-1601 administration: dietary supplementation versus water addition","volume":"283","author":"Luo","year":"2024","journal-title":"Microbiol. Res."},{"key":"10.1016\/j.cbd.2026.102024_bb0260","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2024.740709","article-title":"Strain-specific responses of Penaeus vannamei to two Enterococcus faecium strains supplementation: a trade-off between growth and immunity","volume":"585","author":"Luo","year":"2024","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0265","doi-asserted-by":"crossref","DOI":"10.1016\/j.algal.2020.102040","article-title":"Ulva lactuca as a functional ingredient and water bioremediator positively influences the hepatopancreas and water microbiota in the rearing of Litopenaeus vannamei","volume":"51","author":"Mangott","year":"2020","journal-title":"Algal Res."},{"key":"10.1016\/j.cbd.2026.102024_bb0270","doi-asserted-by":"crossref","first-page":"1103","DOI":"10.1111\/faf.12787","article-title":"Consistent features of the gut microbiota in response to diverse shrimp Litopenaeus vannamei diseases: a meta-analysis","volume":"24","author":"Mao","year":"2023","journal-title":"Fish Fish."},{"key":"10.1016\/j.cbd.2026.102024_bb0275","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1111\/raq.12102","article-title":"Microbial metagenomics in aquaculture: a potential tool for a deeper insight into the activity of microbial communities","volume":"9","author":"Mart\u00ednez-Porchas","year":"2017","journal-title":"Rev. Aquac."},{"key":"10.1016\/j.cbd.2026.102024_bb0280","doi-asserted-by":"crossref","DOI":"10.1002\/mbo3.967","article-title":"Effect of Streptomyces probiotics on the gut microbiota of Litopenaeus vannamei challenged with Vibrio parahaemolyticus","volume":"9","author":"Maz\u00f3n-Su\u00e1stegui","year":"2020","journal-title":"MicrobiologyOpen"},{"key":"10.1016\/j.cbd.2026.102024_bb0285","article-title":"Analysis of antibiotic resistance genes (ARGs) across diverse bacterial species in shrimp aquaculture","volume":"13","author":"Mitchell","year":"2024","journal-title":"Antibiotics (Basel, Switzerland)"},{"key":"10.1016\/j.cbd.2026.102024_bb0290","doi-asserted-by":"crossref","first-page":"3402","DOI":"10.1038\/s41467-018-05884-0","article-title":"Chitin-based barrier immunity and its loss predated mucus-colonization by indigenous gut microbiota","volume":"9","author":"Nakashima","year":"2018","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cbd.2026.102024_bb0295","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2025.743214","article-title":"Modulating the gut microbiome-immune axis in shrimp: use of probiotics to enhance disease resistance","volume":"612","author":"Negi","year":"2026","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0300","doi-asserted-by":"crossref","first-page":"6392","DOI":"10.1038\/s41598-022-10442-2","article-title":"Agavin induces beneficial microbes in the shrimp microbiota under farming conditions","volume":"12","author":"Ochoa-Romo","year":"2022","journal-title":"Sci. Rep."},{"key":"10.1016\/j.cbd.2026.102024_bb5000","first-page":"101830","article-title":"Microbiome and multi-omics insights into sustainable aquaculture: A triennial systematic review","volume":"59","author":"Okoye","year":"2026","journal-title":"Comp. Biochem. Physiol. D: Genomics Proteomics"},{"key":"10.1016\/j.cbd.2026.102024_bb0305","doi-asserted-by":"crossref","DOI":"10.3389\/frmbi.2023.1113635","article-title":"A multi-angle analysis of injury induced by supplementation of soybean meal in Litopenaeus vannamei diets","volume":"2","author":"Peng","year":"2023","journal-title":"Front. Microbiomes"},{"key":"10.1016\/j.cbd.2026.102024_bb0310","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms6030083","article-title":"Exploring the impact of the biofloc rearing system and an oral WSSV challenge on the intestinal bacteriome of Litopenaeus vannamei","volume":"6","author":"Pilotto","year":"2018","journal-title":"Microorganisms"},{"key":"10.1016\/j.cbd.2026.102024_bb0315","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2024.741254","article-title":"Microbial community composition, nitrification process, and growth of Penaeus vannamei in a synbiotic nursery system inoculated with different probiotic microorganisms","volume":"592","author":"Pimentel","year":"2024","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0320","doi-asserted-by":"crossref","first-page":"2649","DOI":"10.1111\/jam.15448","article-title":"Effect of functional diets on intestinal microbiota and resistance to Vibrio parahaemolyticus causing acute hepatopancreatic necrosis disease (AHPND) of Pacific white shrimp (Penaeus vannamei)","volume":"132","author":"Quiroz-Guzm\u00e1n","year":"2022","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0325","doi-asserted-by":"crossref","first-page":"e00782-24","DOI":"10.1128\/msystems.00782-24","article-title":"Genome-centric metagenomics provides insights into the core microbial community and functional profiles of biofloc aquaculture","volume":"9","author":"Rajeev","year":"2024","journal-title":"mSystems"},{"key":"10.1016\/j.cbd.2026.102024_bb0330","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1111\/raq.12471","article-title":"Healthy microbiome: a key to successful and sustainable shrimp aquaculture","volume":"13","author":"Rajeev","year":"2021","journal-title":"Rev. Aquac."},{"key":"10.1016\/j.cbd.2026.102024_bb0335","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1186\/s40168-021-01043-8","article-title":"Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus)","volume":"9","author":"Restrepo","year":"2021","journal-title":"Microbiome"},{"key":"10.1016\/j.cbd.2026.102024_bb0340","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0091853","article-title":"Characterization of intestinal bacteria in wild and domesticated adult black tiger shrimp (Penaeus monodon)","volume":"9","author":"Rungrassamee","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.cbd.2026.102024_bb0345","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2026.743624","article-title":"Molecular and functional insights of \u03b2-1,3-glucan-binding protein (\u03b2-GBP) in polyphenol-based oxidative stress mitigation in whiteleg shrimp (Penaeus vannamei)","volume":"615","author":"Safdar","year":"2026","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0350","doi-asserted-by":"crossref","DOI":"10.1186\/s40168-026-02418-5","article-title":"Precisely designed keystone metabolites boost shrimp disease resistance by recruiting symbionts via the lipoxin A4\u2013AP-1 pathway","volume":"14","author":"Sha","year":"2026","journal-title":"Microbiome"},{"key":"10.1016\/j.cbd.2026.102024_bb0355","doi-asserted-by":"crossref","first-page":"3924","DOI":"10.1111\/1462-2920.16024","article-title":"A meta-analysis study of the robustness and universality of gut microbiota\u2013shrimp diseases relationship","volume":"24","author":"Sha","year":"2022","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0360","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2012.00417","article-title":"Fundamentals of microbial community resistance and resilience","volume":"3","author":"Shade","year":"2012","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0365","doi-asserted-by":"crossref","DOI":"10.1128\/aem.02420-24","article-title":"Microbiome determinants of productivity in aquaculture of whiteleg shrimp","volume":"91","author":"Shan","year":"2025","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0370","doi-asserted-by":"crossref","first-page":"354","DOI":"10.1016\/j.aquaculture.2019.02.011","article-title":"Replacement of fishmeal by fermented soybean meal could enhance the growth performance but not significantly influence the intestinal microbiota of white shrimp Litopenaeus vannamei","volume":"504","author":"Shao","year":"2019","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0375","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2025.743350","article-title":"Construction of synthetic communities against Vibrio parahaemolyticus infection in shrimp based on gut bacterial enrichment cultures","volume":"613","author":"Shen","year":"2026","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0380","article-title":"Dietary supplementation of \u03b2-1,3-glucan improves the intestinal health of white shrimp (Litopenaeus vannamei) by modulating intestinal microbiota and inhibiting inflammatory response","volume":"14","author":"Shen","year":"2023","journal-title":"Front. Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0385","doi-asserted-by":"crossref","DOI":"10.1016\/j.micpath.2025.107354","article-title":"Phage cocktail against Vibrio parahaemolyticus causing AHPND in Penaeus vannamei: genomic, biological, and pathological characterization","volume":"200","author":"Soto-Rodriguez","year":"2025","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.cbd.2026.102024_bb0390","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1016\/j.envint.2018.07.007","article-title":"Persistence and spatial variation of antibiotic resistance genes and bacterial populations change in reared shrimp in South China","volume":"119","author":"Su","year":"2018","journal-title":"Environ. Int."},{"key":"10.1016\/j.cbd.2026.102024_bb0395","doi-asserted-by":"crossref","DOI":"10.1016\/j.jip.2023.107932","article-title":"White feces syndrome in Penaeus vannamei is potentially an Enterocytozoon hepatopenaei (EHP) associated pathobiome origin of Vibrio spp","volume":"198","author":"Subash","year":"2023","journal-title":"J. Invertebr. Pathol."},{"key":"10.1016\/j.cbd.2026.102024_bb0400","doi-asserted-by":"crossref","first-page":"196","DOI":"10.1016\/j.aquaculture.2019.04.026","article-title":"Insights into the intestinal microbiota of several aquatic organisms and association with the surrounding environment","volume":"507","author":"Sun","year":"2019","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0405","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1016\/j.fsi.2017.02.008","article-title":"Response of gut health and microbiota to sulfide exposure in Pacific white shrimp Litopenaeus vannamei","volume":"63","author":"Suo","year":"2017","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0410","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2025.1625265","article-title":"Microbiome engineering to enhance disease resistance in aquaculture: current strategies and future directions","volume":"16","author":"Tayyab","year":"2025","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0415","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1016\/j.fsi.2020.08.042","article-title":"Metagenomics in bioflocs and their effects on gut microbiome and immune responses in Pacific white shrimp","volume":"106","author":"Tepaamorndech","year":"2020","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0420","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2020.735795","article-title":"Effects of carbohydrate sources on a biofloc nursery system for whiteleg shrimp (Litopenaeus vannamei)","volume":"531","author":"Tinh","year":"2021","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0425","doi-asserted-by":"crossref","DOI":"10.1186\/s10152-017-0485-z","article-title":"Bacterial biota of shrimp intestine is significantly modified by the use of a probiotic mixture: a high throughput sequencing approach","volume":"71","author":"Vargas-Albores","year":"2017","journal-title":"Helgol. Mar. Res."},{"key":"10.1016\/j.cbd.2026.102024_bb0430","article-title":"Characteristics of gut microbiota in Penaeus vannamei shifted with elevated salinity","volume":"16","author":"Wang","year":"2025","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0435","doi-asserted-by":"crossref","first-page":"1517","DOI":"10.1007\/s00438-020-01717-2","article-title":"Insights into the microbiota of larval and postlarval Pacific white shrimp (Penaeus vannamei) along early developmental stages: a case in pond level","volume":"295","author":"Wang","year":"2020","journal-title":"Mol. Gen. Genomics."},{"key":"10.1016\/j.cbd.2026.102024_bb0440","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2020.735447","article-title":"Insights into the histopathology and microbiome of Pacific white shrimp, Penaeus vannamei, suffering from white feces syndrome","volume":"527","author":"Wang","year":"2020","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0445","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1016\/j.fsi.2018.09.076","article-title":"White spot syndrome virus infection impacts intestinal microbiota composition and function in Litopenaeus vannamei","volume":"84","author":"Wang","year":"2019","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0450","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1186\/s40168-020-00879-w","article-title":"Fine-scale succession patterns and assembly mechanisms of bacterial community of Litopenaeus vannamei larvae across the developmental cycle","volume":"8","author":"Wang","year":"2020","journal-title":"Microbiome"},{"key":"10.1016\/j.cbd.2026.102024_bb0455","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2019.734492","article-title":"Effect of different carbon sources on microbial community structure and composition of ex-situ biofloc formation","volume":"515","author":"Wei","year":"2020","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0460","doi-asserted-by":"crossref","first-page":"456","DOI":"10.1016\/j.fsi.2019.04.301","article-title":"Effects of dietary mixed probiotics on growth, non-specific immunity, intestinal morphology and microbiota of juvenile Pacific white shrimp, Litopenaeus vannamei","volume":"90","author":"Xie","year":"2019","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0465","doi-asserted-by":"crossref","first-page":"3686","DOI":"10.1111\/mec.14822","article-title":"Response of host\u2013bacterial colonization in shrimp to developmental stage, environment and disease","volume":"27","author":"Xiong","year":"2018","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cbd.2026.102024_bb0470","doi-asserted-by":"crossref","first-page":"988","DOI":"10.1007\/s00248-016-0910-x","article-title":"The underlying ecological processes of gut microbiota among cohabitating retarded, overgrown and normal shrimp","volume":"73","author":"Xiong","year":"2017","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.cbd.2026.102024_bb0475","doi-asserted-by":"crossref","first-page":"6911","DOI":"10.1007\/s00253-015-6632-z","article-title":"Changes in intestinal bacterial communities are closely associated with shrimp disease severity","volume":"99","author":"Xiong","year":"2015","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.cbd.2026.102024_bb0480","doi-asserted-by":"crossref","first-page":"1383","DOI":"10.1111\/1462-2920.14578","article-title":"Spatiotemporal successions of shrimp gut microbial colonization: high consistency despite distinct species pool","volume":"21","author":"Xiong","year":"2019","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0485","article-title":"White feces syndrome is closely related with hypoimmunity and dysbiosis in Litopenaeus vannamei","volume":"38","author":"Xv","year":"2024","journal-title":"Aquacult. Rep."},{"key":"10.1016\/j.cbd.2026.102024_bb0490","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2024.1479446","article-title":"Effects of dietary probiotic (Clostridium butyricum I9, C. Butyricum G15, or Paraclostridium bifermentans X13) on growth, digestive enzyme activities, immunity, and intestinal microbiota of Pacific white shrimp","volume":"15","author":"Yang","year":"2024","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0495","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1186\/s13568-018-0644-x","article-title":"Disease outbreak accompanies the dispersive structure of shrimp gut bacterial community with a simple core microbiota","volume":"8","author":"Yao","year":"2018","journal-title":"AMB Express"},{"key":"10.1016\/j.cbd.2026.102024_bb0500","article-title":"Growth and health responses to a long-term pH stress in Pacific white shrimp Litopenaeus vannamei","volume":"16","author":"Yu","year":"2020","journal-title":"Aquacult. Rep."},{"key":"10.1016\/j.cbd.2026.102024_bb0505","doi-asserted-by":"crossref","DOI":"10.1093\/femsec\/fiy147","article-title":"A meta-analysis reveals universal gut bacterial signatures for diagnosing the incidence of shrimp disease","volume":"94","author":"Yu","year":"2018","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.cbd.2026.102024_bb0510","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1007\/s00253-024-13213-3","article-title":"The intestine microbiota of shrimp and its impact on cultivation","volume":"108","author":"Zeng","year":"2024","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.cbd.2026.102024_bb0515","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1016\/j.aquaculture.2015.12.014","article-title":"Response of gut microbiota to salinity change in two euryhaline aquatic animals with reverse salinity preference","volume":"454","author":"Zhang","year":"2016","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0520","article-title":"Quantifying the importance of abiotic and biotic factors governing the succession of gut microbiota over shrimp ontogeny","volume":"12","author":"Zhang","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cbd.2026.102024_bb0525","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2020.735910","article-title":"Quantifying the importance of external and internal sources to the gut microbiota in juvenile and adult shrimp","volume":"531","author":"Zhang","year":"2021","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0530","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1016\/j.jhazmat.2018.02.004","article-title":"Metagenomic analysis revealed the prevalence of antibiotic resistance genes in the gut and living environment of freshwater shrimp","volume":"350","author":"Zhao","year":"2018","journal-title":"J. Hazard. Mater."},{"key":"10.1016\/j.cbd.2026.102024_bb0535","doi-asserted-by":"crossref","first-page":"629","DOI":"10.1016\/j.fsi.2019.06.054","article-title":"Intestinal bacterial signatures of the \u2018cotton shrimp-like\u2019 disease explain the change of growth performance and immune responses in Pacific white shrimp","volume":"92","author":"Zhou","year":"2019","journal-title":"Fish Shellfish Immunol."},{"key":"10.1016\/j.cbd.2026.102024_bb0540","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2021.736658","article-title":"Deep insight into bacterial community characterization and relationship in the pond water, sediment and the gut of shrimp (Penaeus japonicus)","volume":"539","author":"Zhou","year":"2021","journal-title":"Aquaculture"},{"key":"10.1016\/j.cbd.2026.102024_bb0545","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms13040720","article-title":"Postlarval shrimp-associated microbiota and underlying ecological processes over AHPND progression","volume":"13","author":"Zhou","year":"2025","journal-title":"Microorganisms"},{"key":"10.1016\/j.cbd.2026.102024_bb0550","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.16743","article-title":"Effects of nanoplastics on the gut microbiota of Pacific white shrimp Litopenaeus vannamei","volume":"12","author":"Zhu","year":"2024","journal-title":"PeerJ"}],"container-title":["Comparative Biochemistry and Physiology Part D: Genomics and Proteomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1744117X26002832?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1744117X26002832?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,30]],"date-time":"2026-10-30T11:44:05Z","timestamp":1793360645000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1744117X26002832"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2027,3]]},"references-count":114,"alternative-id":["S1744117X26002832"],"URL":"https:\/\/doi.org\/10.1016\/j.cbd.2026.102024","relation":{},"ISSN":["1744-117X"],"issn-type":[{"value":"1744-117X","type":"print"}],"subject":[],"published":{"date-parts":[[2027,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"From dysbiosis to resilience: Microbiome engineering for sustainable shrimp aquaculture","name":"articletitle","label":"Article Title"},{"value":"Comparative Biochemistry and Physiology Part D: Genomics and Proteomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.cbd.2026.102024","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier Inc. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"102024"}}