{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,2]],"date-time":"2026-06-02T07:36:43Z","timestamp":1780385803831,"version":"3.54.1"},"reference-count":111,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2017,5,1]],"date-time":"2017-05-01T00:00:00Z","timestamp":1493596800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2017,5,1]],"date-time":"2017-05-01T00:00:00Z","timestamp":1493596800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2018,5,4]],"date-time":"2018-05-04T00:00:00Z","timestamp":1525392000000},"content-version":"vor","delay-in-days":368,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"},{"start":{"date-parts":[[2017,5,1]],"date-time":"2017-05-01T00:00:00Z","timestamp":1493596800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2017,5,1]],"date-time":"2017-05-01T00:00:00Z","timestamp":1493596800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2017,5,1]],"date-time":"2017-05-01T00:00:00Z","timestamp":1493596800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2017,5,1]],"date-time":"2017-05-01T00:00:00Z","timestamp":1493596800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2017,5,1]],"date-time":"2017-05-01T00:00:00Z","timestamp":1493596800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"name":"Agriculture and Food Research Initiative competitive","award":["2014-67013-21564"],"award-info":[{"award-number":["2014-67013-21564"]}]},{"DOI":"10.13039\/100005825","name":"USDA National Institute of Food and Agriculture","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Colorado Agricultural Experiment Station"}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Cell"],"published-print":{"date-parts":[[2017,5]]},"DOI":"10.1016\/j.cell.2017.04.025","type":"journal-article","created":{"date-parts":[[2017,5,4]],"date-time":"2017-05-04T12:33:52Z","timestamp":1493901232000},"page":"587-596","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":332,"title":["Communication in the Phytobiome"],"prefix":"10.1016","volume":"169","author":[{"given":"Jan E.","family":"Leach","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lindsay R.","family":"Triplett","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cristiana T.","family":"Argueso","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pankaj","family":"Trivedi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.cell.2017.04.025_bib1","doi-asserted-by":"crossref","first-page":"e1002352","DOI":"10.1371\/journal.pbio.1002352","article-title":"Microbial hub taxa link host and abiotic factors to plant microbiome variation","volume":"14","author":"Agler","year":"2016","journal-title":"PLoS Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib2","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1007\/s00374-004-0774-y","article-title":"Non-target effects of bacterial biological control agents on soil Protozoa","volume":"40","author":"Andersen","year":"2004","journal-title":"Biol. Fertil. Soils"},{"key":"10.1016\/j.cell.2017.04.025_bib3","doi-asserted-by":"crossref","first-page":"3603","DOI":"10.1111\/mec.13195","article-title":"Phylogenetic community ecology of\u00a0soil biodiversity using mitochondrial metagenomics","volume":"24","author":"And\u00fajar","year":"2015","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cell.2017.04.025_bib4","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1016\/j.protis.2010.12.002","article-title":"Developmental gene regulation by an ancient intercellular communication system in social amoebae","volume":"163","author":"Asghar","year":"2012","journal-title":"Protist"},{"key":"10.1016\/j.cell.2017.04.025_bib5","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1128\/AEM.69.1.285-289.2003","article-title":"Elevated abundance of bacteriophage infecting bacteria in soil","volume":"69","author":"Ashelford","year":"2003","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib6","series-title":"Associative and Endophytic Nitrogen-Fixing Bacteria and Cyanobacterial Associations","first-page":"113","article-title":"Microbial production of plant hormones","author":"Baca","year":"2007"},{"key":"10.1016\/j.cell.2017.04.025_bib7","article-title":"Is quorum signaling by mycotoxins a new risk-mitigating strategy for bacterial biocontrol of Fusarium verticillioides and other endophytic fungal species?","author":"Bacon","year":"2016","journal-title":"J.\u00a0Agric. Food Chem."},{"key":"10.1016\/j.cell.2017.04.025_bib8","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1038\/nature13855","article-title":"Belowground biodiversity and ecosystem functioning","volume":"515","author":"Bardgett","year":"2014","journal-title":"Nature"},{"key":"10.1016\/j.cell.2017.04.025_bib9","doi-asserted-by":"crossref","first-page":"652","DOI":"10.1038\/ismej.2012.147","article-title":"Global biogeography of highly diverse protistan communities in soil","volume":"7","author":"Bates","year":"2013","journal-title":"ISME J."},{"key":"10.1016\/j.cell.2017.04.025_bib10","doi-asserted-by":"crossref","DOI":"10.1146\/annurev-phyto-080516-035544","article-title":"Evolution of\u00a0hormone signaling networks in plant defense","volume":"55","author":"Berens","year":"2017","journal-title":"Annu. Rev. Phytopathol."},{"key":"10.1016\/j.cell.2017.04.025_bib11","doi-asserted-by":"crossref","first-page":"e226","DOI":"10.1371\/journal.pbio.0040226","article-title":"Strigolactones stimulate arbuscular mycorrhizal fungi by activating mitochondria","volume":"4","author":"Besserer","year":"2006","journal-title":"PLoS Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib12","doi-asserted-by":"crossref","first-page":"e1004283","DOI":"10.1371\/journal.pgen.1004283","article-title":"A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota","volume":"10","author":"Bodenhausen","year":"2014","journal-title":"PLoS Genet."},{"key":"10.1016\/j.cell.2017.04.025_bib13","doi-asserted-by":"crossref","first-page":"1605","DOI":"10.1016\/j.phytochem.2011.04.011","article-title":"Perception of plant volatile blends by herbivorous insects--finding the right mix","volume":"72","author":"Bruce","year":"2011","journal-title":"Phytochemistry"},{"key":"10.1016\/j.cell.2017.04.025_bib14","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1007\/s11104-009-9991-3","article-title":"The rhizosphere zoo: an overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors","volume":"321","author":"Bu\u00e9e","year":"2009","journal-title":"Plant and Soil"},{"key":"10.1016\/j.cell.2017.04.025_bib15","series-title":"Current Research Topics in Plant Virology","first-page":"217","article-title":"Plant virus-vector interactions: More than just for virus transmission","author":"Casteel","year":"2016"},{"key":"10.1016\/j.cell.2017.04.025_bib16","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1016\/j.cub.2012.03.024","article-title":"Ascaroside signaling is widely conserved among nematodes","volume":"22","author":"Choe","year":"2012","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib17","doi-asserted-by":"crossref","first-page":"798","DOI":"10.1111\/nph.13697","article-title":"Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species","volume":"209","author":"Coleman-Derr","year":"2016","journal-title":"New Phytol."},{"key":"10.1016\/j.cell.2017.04.025_bib18","doi-asserted-by":"crossref","first-page":"ra1","DOI":"10.1126\/scisignal.aaa8271","article-title":"Rosmarinic acid is a homoserine lactone mimic produced by plants that activates a bacterial quorum-sensing regulator","volume":"9","author":"Corral-Lugo","year":"2016","journal-title":"Sci. Signal."},{"key":"10.1016\/j.cell.2017.04.025_bib19","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1111\/j.1758-2229.2010.00209.x","article-title":"Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis","volume":"3","author":"Cusano","year":"2011","journal-title":"Environ. Microbiol. Rep."},{"key":"10.1016\/j.cell.2017.04.025_bib20","doi-asserted-by":"crossref","first-page":"746","DOI":"10.1126\/science.1236011","article-title":"Pivoting the plant immune system from dissection to deployment","volume":"341","author":"Dangl","year":"2013","journal-title":"Science"},{"key":"10.1016\/j.cell.2017.04.025_bib21","doi-asserted-by":"crossref","first-page":"840","DOI":"10.1007\/s10886-013-0306-z","article-title":"Microbial volatile emissions as insect semiochemicals","volume":"39","author":"Davis","year":"2013","journal-title":"J.\u00a0Chem. Ecol."},{"key":"10.1016\/j.cell.2017.04.025_bib22","doi-asserted-by":"crossref","first-page":"938","DOI":"10.1111\/j.1529-8817.2008.00533.x","article-title":"Involvement of indole-3-acetic acid produced by the growth-promoting bacterium azospirillum spp. in promoting growth of Chorella vulgaris(1)","volume":"44","author":"De-Bashan","year":"2008","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cell.2017.04.025_bib23","doi-asserted-by":"crossref","first-page":"28774","DOI":"10.1038\/srep28774","article-title":"Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome","volume":"6","author":"de Souza","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.cell.2017.04.025_bib24","doi-asserted-by":"crossref","first-page":"265","DOI":"10.3389\/fmicb.2013.00265","article-title":"Controls on soil microbial community stability under climate change","volume":"4","author":"de Vries","year":"2013","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib25","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1016\/j.femsec.2004.10.005","article-title":"N-hexanoyl-L-homoserine lactone, a mediator of bacterial quorum-sensing regulation, exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings","volume":"52","author":"Delalande","year":"2005","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.cell.2017.04.025_bib26","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1007\/s10658-007-9157-1","article-title":"Dialogues of root-colonizing biocontrol pseudomonads","volume":"119","author":"Dubuis","year":"2007","journal-title":"Eur. J. Plant Pathol."},{"key":"10.1016\/j.cell.2017.04.025_bib27","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1073\/pnas.92.1.50","article-title":"The chemistry of sexual selection","volume":"92","author":"Eisner","year":"1995","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cell.2017.04.025_bib28","doi-asserted-by":"crossref","first-page":"1198","DOI":"10.1128\/AEM.67.3.1198-1209.2001","article-title":"Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp","volume":"67","author":"Elasri","year":"2001","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib29","doi-asserted-by":"crossref","first-page":"488","DOI":"10.1038\/nature21049","article-title":"Communication between viruses guides lysis-lysogeny decisions","volume":"541","author":"Erez","year":"2017","journal-title":"Nature"},{"key":"10.1016\/j.cell.2017.04.025_bib30","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1016\/j.still.2009.04.006","article-title":"Earthworm populations and growth rates related to long-term crop residue and tillage management","volume":"104","author":"Eriksen-Hamel","year":"2009","journal-title":"Soil Tillage Res."},{"key":"10.1016\/j.cell.2017.04.025_bib31","doi-asserted-by":"crossref","first-page":"150","DOI":"10.3389\/fmicb.2016.00150","article-title":"The cacti microbiome: Interplay between habitat-filtering and host-specificity","volume":"7","author":"Fonseca-Garc\u00eda","year":"2016","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib32","doi-asserted-by":"crossref","first-page":"839","DOI":"10.1146\/annurev-arplant-042811-105606","article-title":"Systemic acquired resistance: turning local infection into global defense","volume":"64","author":"Fu","year":"2013","journal-title":"Annu. Rev. Plant Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib33","doi-asserted-by":"crossref","first-page":"e1048052","DOI":"10.1080\/15592324.2015.1048052","article-title":"Indole-3-acetic acid: A widespread physiological code in interactions of fungi with other organisms","volume":"10","author":"Fu","year":"2015","journal-title":"Plant Signal. Behav."},{"key":"10.1016\/j.cell.2017.04.025_bib34","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1080\/15569540802420584","article-title":"Host-derived lipids and oxylipins are crucial signals in modulating mycotoxin production by fungi","volume":"28","author":"Gao","year":"2009","journal-title":"Toxin Rev."},{"key":"10.1016\/j.cell.2017.04.025_bib35","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1146\/annurev.phyto.43.040204.135923","article-title":"Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens","volume":"43","author":"Glazebrook","year":"2005","journal-title":"Annu. Rev. Phytopathol."},{"key":"10.1016\/j.cell.2017.04.025_bib36","doi-asserted-by":"crossref","first-page":"355","DOI":"10.3389\/fmicb.2013.00355","article-title":"Bespoke microbiome therapy to manage plant diseases","volume":"4","author":"Gopal","year":"2013","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib37","doi-asserted-by":"crossref","first-page":"2269","DOI":"10.1038\/ismej.2016.10","article-title":"Protistan community analysis: key findings of a large-scale molecular sampling","volume":"10","author":"Grossmann","year":"2016","journal-title":"ISME J."},{"key":"10.1016\/j.cell.2017.04.025_bib38","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1016\/j.chom.2015.04.009","article-title":"Microbiota and host nutrition across plant and animal kingdoms","volume":"17","author":"Hacquard","year":"2015","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.cell.2017.04.025_bib39","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1023\/A:1012705231992","article-title":"Non-litter effects of elevated CO2 on forest floor microarthropod abundances","volume":"236","author":"Hansen","year":"2001","journal-title":"Plant Soil"},{"key":"10.1016\/j.cell.2017.04.025_bib40","doi-asserted-by":"crossref","first-page":"131","DOI":"10.3389\/fpls.2014.00131","article-title":"Bacterial quorum sensing compounds are important modulators of microbe-plant interactions","volume":"5","author":"Hartmann","year":"2014","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cell.2017.04.025_bib41","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1186\/s12915-015-0188-3","article-title":"A herbivore-induced plant volatile interferes with host plant and mate location in moths through suppression of olfactory signalling pathways","volume":"13","author":"Hatano","year":"2015","journal-title":"BMC Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib42","doi-asserted-by":"crossref","first-page":"1193","DOI":"10.1007\/s10886-013-0338-4","article-title":"Heterodera schachtii nematodes interfere with aphid-plant relations on Brassica oleracea","volume":"39","author":"Hol","year":"2013","journal-title":"J.\u00a0Chem. Ecol."},{"key":"10.1016\/j.cell.2017.04.025_bib43","doi-asserted-by":"crossref","first-page":"1857","DOI":"10.1038\/ismej.2011.65","article-title":"Sharing of quorum-sensing signals and role of interspecies communities in a bacterial plant disease","volume":"5","author":"Hosni","year":"2011","journal-title":"ISME J."},{"key":"10.1016\/j.cell.2017.04.025_bib44","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1016\/j.cub.2012.11.035","article-title":"Nematode-trapping fungi eavesdrop on nematode pheromones","volume":"23","author":"Hsueh","year":"2013","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib45","doi-asserted-by":"crossref","first-page":"1117","DOI":"10.1126\/science.aaf6395","article-title":"Intracellular innate immune surveillance devices in plants and animals","volume":"354","author":"Jones","year":"2016","journal-title":"Science"},{"key":"10.1016\/j.cell.2017.04.025_bib46","doi-asserted-by":"crossref","first-page":"e21738","DOI":"10.7554\/eLife.21738","article-title":"Streptomyces exploration is triggered by fungal interactions and volatile signals","volume":"6","author":"Jones","year":"2017","journal-title":"eLife"},{"key":"10.1016\/j.cell.2017.04.025_bib47","doi-asserted-by":"crossref","first-page":"5263","DOI":"10.1128\/AEM.02941-09","article-title":"Predator-prey chemical warfare determines the expression of biocontrol genes by rhizosphere-associated Pseudomonas fluorescens","volume":"76","author":"Jousset","year":"2010","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib48","doi-asserted-by":"crossref","first-page":"806","DOI":"10.1126\/science.1119499","article-title":"Flowers and fungi use scents to mimic each other","volume":"311","author":"Kaiser","year":"2006","journal-title":"Science"},{"key":"10.1016\/j.cell.2017.04.025_bib49","doi-asserted-by":"crossref","first-page":"151","DOI":"10.3389\/fpls.2015.00151","article-title":"Chemical diversity of microbial volatiles and their potential for plant growth and productivity","volume":"6","author":"Kanchiswamy","year":"2015","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cell.2017.04.025_bib50","doi-asserted-by":"crossref","first-page":"E70","DOI":"10.3390\/insects7040070","article-title":"Biological control beneath the Feet: A review of crop protection against insect root herbivores","volume":"7","author":"Kergunteuil","year":"2016","journal-title":"Insects"},{"key":"10.1016\/j.cell.2017.04.025_bib51","doi-asserted-by":"crossref","first-page":"3756","DOI":"10.1002\/ece3.1654","article-title":"Interrelated effects of mycorrhiza and free-living nitrogen fixers cascade up to aboveground herbivores","volume":"5","author":"Khaitov","year":"2015","journal-title":"Ecol. Evol."},{"key":"10.1016\/j.cell.2017.04.025_bib52","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1093\/ee\/14.3.297","article-title":"Behavior and biology of Nephotettix virescens (Homoptera: Cicadellidae) on tungro virus-infected rice plants: Epidemiology implications","volume":"14","author":"Khan","year":"1985","journal-title":"Environ. Entomol."},{"key":"10.1016\/j.cell.2017.04.025_bib53","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1111\/j.1574-6968.2009.01861.x","article-title":"Zoosporic plant pathogens produce bacterial autoinducer-2 that affects Vibrio harveyi quorum sensing","volume":"303","author":"Kong","year":"2010","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.cell.2017.04.025_bib54","doi-asserted-by":"crossref","first-page":"1665","DOI":"10.1016\/j.soilbio.2005.11.027","article-title":"Grazing of a common species of soil protozoa (Acanthamoeba castellanii) affects rhizosphere bacterial community composition and root architecture of rice (Oryza sativa L.)","volume":"38","author":"Kreuzer","year":"2006","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.cell.2017.04.025_bib55","series-title":"Bacterial metabolites in sustainable agroecosystem","first-page":"69","article-title":"Role of bacterial phytohormones in plant growth regulation and their development","author":"Kudoyarova","year":"2015"},{"key":"10.1016\/j.cell.2017.04.025_bib56","doi-asserted-by":"crossref","first-page":"575","DOI":"10.1007\/s11103-015-0417-8","article-title":"Plant root-microbe communication in shaping root microbiomes","volume":"90","author":"Lareen","year":"2016","journal-title":"Plant Mol. Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib57","doi-asserted-by":"crossref","first-page":"860","DOI":"10.1126\/science.aaa8764","article-title":"Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa","volume":"349","author":"Lebeis","year":"2015","journal-title":"Science"},{"key":"10.1016\/j.cell.2017.04.025_bib58","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1016\/j.tim.2015.08.001","article-title":"Roles of indole as an interspecies and interkingdom signaling molecule","volume":"23","author":"Lee","year":"2015","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib59","doi-asserted-by":"crossref","first-page":"2365","DOI":"10.1128\/AEM.71.5.2365-2371.2005","article-title":"Utilization of the plant hormone indole-3-acetic acid for growth by Pseudomonas putida strain 1290","volume":"71","author":"Leveau","year":"2005","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib60","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1016\/j.fbr.2016.06.004","article-title":"Stop and smell the fungi: Fungal volatile metabolites are overlooked signals involved in fungal interaction with plants","volume":"30","author":"Li","year":"2016","journal-title":"Fungal Biol. Rev."},{"key":"10.1016\/j.cell.2017.04.025_bib61","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1186\/1999-3110-54-41","article-title":"Biodiversity of soil algae in the farmlands of mid-Taiwan","volume":"54","author":"Lin","year":"2013","journal-title":"Bot. Stud."},{"key":"10.1016\/j.cell.2017.04.025_bib62","doi-asserted-by":"crossref","first-page":"15684","DOI":"10.1073\/pnas.1516684112","article-title":"Increasing aridity reduces soil microbial diversity and abundance in global drylands","volume":"112","author":"Maestre","year":"2015","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cell.2017.04.025_bib63","doi-asserted-by":"crossref","first-page":"7795","DOI":"10.1038\/ncomms8795","article-title":"Conserved nematode signalling molecules elicit plant defenses and pathogen resistance","volume":"6","author":"Manosalva","year":"2015","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cell.2017.04.025_bib64","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1186\/s40168-015-0094-5","article-title":"The vocabulary of microbiome research: a\u00a0proposal","volume":"3","author":"Marchesi","year":"2015","journal-title":"Microbiome"},{"key":"10.1016\/j.cell.2017.04.025_bib65","doi-asserted-by":"crossref","first-page":"1363","DOI":"10.1111\/nph.14251","article-title":"Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita","volume":"213","author":"Mart\u00ednez-Medina","year":"2017","journal-title":"New Phytol."},{"key":"10.1016\/j.cell.2017.04.025_bib66","doi-asserted-by":"crossref","first-page":"634","DOI":"10.1111\/1574-6976.12028","article-title":"The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms","volume":"37","author":"Mendes","year":"2013","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.cell.2017.04.025_bib67","doi-asserted-by":"crossref","first-page":"14349","DOI":"10.1038\/ncomms14349","article-title":"Soil networks become more connected and take up more carbon as nature restoration progresses","volume":"8","author":"Morri\u00ebn","year":"2017","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cell.2017.04.025_bib68","doi-asserted-by":"crossref","first-page":"138","DOI":"10.3389\/fmicb.2015.00138","article-title":"Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees","volume":"6","author":"M\u00fcller","year":"2015","journal-title":"Front Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib69","series-title":"Phytobiomes: A Roadmap for Research and Translation","first-page":"15","year":"2016"},{"key":"10.1016\/j.cell.2017.04.025_bib70","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1038\/nchembio.164","article-title":"Networking by small-molecule hormones in plant immunity","volume":"5","author":"Pieterse","year":"2009","journal-title":"Nat. Chem. Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib71","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1146\/annurev-cellbio-092910-154055","article-title":"Hormonal modulation of plant immunity","volume":"28","author":"Pieterse","year":"2012","journal-title":"Annu Rev Cell Dev Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib72","doi-asserted-by":"crossref","DOI":"10.1002\/mbo3.415","article-title":"Understanding pine wilt disease: roles of the pine endophytic bacteria and of the bacteria carried by the disease-causing pinewood nematode","volume":"6","author":"Proen\u00e7a","year":"2017","journal-title":"MicrobiologyOpen"},{"key":"10.1016\/j.cell.2017.04.025_bib73","doi-asserted-by":"crossref","first-page":"e0159680","DOI":"10.1371\/journal.pone.0159680","article-title":"Impacts of grazing intensity and plant community composition on soil bacterial community diversity in a steppe grassland","volume":"11","author":"Qu","year":"2016","journal-title":"PLoS ONE"},{"key":"10.1016\/j.cell.2017.04.025_bib74","doi-asserted-by":"crossref","first-page":"1118","DOI":"10.1104\/pp.15.00787","article-title":"Methylated cytokinins from the phytopathogen Rhodococcus fascians mimic plant hormone activity","volume":"169","author":"Radhika","year":"2015","journal-title":"Plant Physiol."},{"key":"10.1016\/j.cell.2017.04.025_bib75","doi-asserted-by":"crossref","first-page":"1325","DOI":"10.1099\/mic.0.27715-0","article-title":"Identity and effects of quorum-sensing inhibitors produced by Penicillium species","volume":"151","author":"Rasmussen","year":"2005","journal-title":"Microbiology"},{"key":"10.1016\/j.cell.2017.04.025_bib76","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1016\/j.tplants.2004.03.009","article-title":"Interactions of insect pheromones and plant semiochemicals","volume":"9","author":"Reddy","year":"2004","journal-title":"Trends Plant Sci."},{"key":"10.1016\/j.cell.2017.04.025_bib77","doi-asserted-by":"crossref","first-page":"756","DOI":"10.1038\/ismej.2011.209","article-title":"Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere","volume":"6","author":"Remus-Emsermann","year":"2012","journal-title":"ISME J."},{"key":"10.1016\/j.cell.2017.04.025_bib78","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1016\/j.ejsobi.2012.08.005","article-title":"Spatial organization of earthworm assemblages in pastures of northwestern France","volume":"53","author":"Richard","year":"2012","journal-title":"Eur. J. Soil Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib79","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1007\/s00248-016-0750-8","article-title":"Infection with a shoot-specific fungal endophyte (Epichlo\u00eb) alters tall fescue soil microbial communities","volume":"72","author":"Rojas","year":"2016","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.cell.2017.04.025_bib80","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1111\/mpp.12241","article-title":"A new look at plant viruses and their potential beneficial roles in crops","volume":"16","author":"Roossinck","year":"2015","journal-title":"Mol. Plant Pathol."},{"key":"10.1016\/j.cell.2017.04.025_bib81","doi-asserted-by":"crossref","first-page":"1340","DOI":"10.1038\/ismej.2010.58","article-title":"Soil bacterial and fungal communities across a pH gradient in an arable soil","volume":"4","author":"Rousk","year":"2010","journal-title":"ISME J."},{"key":"10.1016\/j.cell.2017.04.025_bib82","first-page":"20122959","article-title":"Outcomes of co-infection by two potyviruses: implications for the evolution of manipulative strategies","volume":"280","author":"Salvaudon","year":"2013","journal-title":"Proc. Biol. Sci."},{"key":"10.1016\/j.cell.2017.04.025_bib83","doi-asserted-by":"crossref","first-page":"5745","DOI":"10.1128\/AEM.01417-13","article-title":"LuxR- and luxI-type quorum-sensing circuits are prevalent in members of the Populus deltoides microbiome","volume":"79","author":"Schaefer","year":"2013","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib84","doi-asserted-by":"crossref","first-page":"1495","DOI":"10.3389\/fmicb.2015.01495","article-title":"Microbial small talk: Volatiles in fungal\u2013bacterial interactions","volume":"6","author":"Schmidt","year":"2016","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib85","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1094\/MPMI-07-15-0156-R","article-title":"The role of cytokinin during infection of Arabidopsis thaliana by the cyst nematode Heterodera schachtii","volume":"29","author":"Shanks","year":"2016","journal-title":"Mol. Plant Microbe Interact."},{"key":"10.1016\/j.cell.2017.04.025_bib86","doi-asserted-by":"crossref","first-page":"174","DOI":"10.1016\/j.semcdb.2016.06.005","article-title":"No hormone to rule them all: Interactions of plant hormones during the responses of plants to pathogens","volume":"56","author":"Shigenaga","year":"2016","journal-title":"Semin. Cell Dev. Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib87","doi-asserted-by":"crossref","DOI":"10.1146\/annurev-phyto-080516-035319","article-title":"Tritrophic Interactions: Microbe-mediated plant effects on insect herbivores","volume":"55","author":"Shikano","year":"2017","journal-title":"Annu. Rev. Phytopathol."},{"key":"10.1016\/j.cell.2017.04.025_bib88","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1007\/s00248-016-0748-2","article-title":"Abundance and diversity of bacterial, archaeal, and fungal communities along an altitudinal gradient in alpine forest soils: What are the driving factors?","volume":"72","author":"Siles","year":"2016","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.cell.2017.04.025_bib89","doi-asserted-by":"crossref","first-page":"722","DOI":"10.3389\/fpls.2015.00722","article-title":"Inter-organismal signaling and management of the phytomicrobiome","volume":"6","author":"Smith","year":"2015","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cell.2017.04.025_bib90","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1016\/j.pbi.2015.05.028","article-title":"Role of plant growth regulators as chemical signals in plant-microbe interactions: a double edged sword","volume":"27","author":"Spence","year":"2015","journal-title":"Curr. Opin. Plant Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib91","doi-asserted-by":"crossref","first-page":"18842","DOI":"10.1073\/pnas.0708139104","article-title":"Regulation of tradeoffs between plant defenses against pathogens with different lifestyles","volume":"104","author":"Spoel","year":"2007","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cell.2017.04.025_bib92","doi-asserted-by":"crossref","first-page":"663","DOI":"10.1146\/annurev.ento.51.110104.151117","article-title":"Plant-mediated interactions between pathogenic microorganisms and herbivorous arthropods","volume":"51","author":"Stout","year":"2006","journal-title":"Annu. Rev. Entomol."},{"key":"10.1016\/j.cell.2017.04.025_bib93","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1007\/s00438-002-0756-4","article-title":"Structure-function analysis of lipopeptide pheromones from the plant pathogen Ustilago maydis","volume":"268","author":"Szab\u00f3","year":"2002","journal-title":"Mol. Genet. Genomics"},{"key":"10.1016\/j.cell.2017.04.025_bib94","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1111\/j.1462-2920.2004.00706.x","article-title":"Disruption of quorum sensing in seawater abolishes attraction of zoospores of the green alga Ulva to bacterial biofilms","volume":"7","author":"Tait","year":"2005","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib95","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1021\/cr100045m","article-title":"Perception and degradation of N-acyl homoserine lactone quorum sensing signals by mammalian and plant cells","volume":"111","author":"Teplitski","year":"2011","journal-title":"Chem. Rev."},{"key":"10.1016\/j.cell.2017.04.025_bib96","doi-asserted-by":"crossref","first-page":"2593","DOI":"10.1038\/ismej.2016.65","article-title":"Microbial regulation of the soil carbon cycle: evidence from gene-enzyme relationships","volume":"10","author":"Trivedi","year":"2016","journal-title":"ISME J."},{"key":"10.1016\/j.cell.2017.04.025_bib97","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/j.tim.2007.01.005","article-title":"Oxylipins as developmental and host-fungal communication signals","volume":"15","author":"Tsitsigiannis","year":"2007","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib98","doi-asserted-by":"crossref","first-page":"890","DOI":"10.1104\/pp.114.255620","article-title":"Development of the poplar-Laccaria bicolor ectomycorrhiza modifies root auxin metabolism, signaling, and response","volume":"169","author":"Vayssi\u00e8res","year":"2015","journal-title":"Plant Physiol."},{"key":"10.1016\/j.cell.2017.04.025_bib99","doi-asserted-by":"crossref","first-page":"515","DOI":"10.1111\/j.1365-2672.2010.04677.x","article-title":"Suppression of bacterial cell-cell signalling, biofilm formation and type III secretion system by citrus flavonoids","volume":"109","author":"Vikram","year":"2010","journal-title":"J.\u00a0Appl. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib100","doi-asserted-by":"crossref","first-page":"639","DOI":"10.3389\/fpls.2015.00639","article-title":"Impact of hormonal crosstalk on plant resistance and fitness under multi-attacker conditions","volume":"6","author":"Vos","year":"2015","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cell.2017.04.025_bib101","doi-asserted-by":"crossref","first-page":"12151","DOI":"10.1038\/ncomms12151","article-title":"Host genotype and age shape the leaf and root microbiomes of a wild perennial plant","volume":"7","author":"Wagner","year":"2016","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cell.2017.04.025_bib102","doi-asserted-by":"crossref","first-page":"2242","DOI":"10.1016\/j.cub.2012.09.043","article-title":"A common signaling process that promotes mycorrhizal and oomycete colonization of plants","volume":"22","author":"Wang","year":"2012","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cell.2017.04.025_bib103","doi-asserted-by":"crossref","first-page":"8651","DOI":"10.1007\/s00253-016-7792-1","article-title":"Belowground communication: impacts of volatile organic compounds (VOCs) from soil fungi on other soil-inhabiting organisms","volume":"100","author":"Werner","year":"2016","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.cell.2017.04.025_bib104","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.01564-14","article-title":"Phyllosphere microbiota composition and microbial community transplantation on lettuce plants grown indoors","volume":"5","author":"Williams","year":"2014","journal-title":"MBio"},{"key":"10.1016\/j.cell.2017.04.025_bib105","doi-asserted-by":"crossref","first-page":"3119","DOI":"10.1128\/AEM.71.6.3119-3125.2005","article-title":"Abundance and diversity of viruses in six Delaware soils","volume":"71","author":"Williamson","year":"2005","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cell.2017.04.025_bib106","doi-asserted-by":"crossref","first-page":"16107","DOI":"10.1038\/nplants.2016.107","article-title":"Soil inoculation steers restoration of terrestrial ecosystems","volume":"2","author":"Wubs","year":"2016","journal-title":"Nat Plants"},{"key":"10.1016\/j.cell.2017.04.025_bib107","first-page":"46","article-title":"Whitefly infestation of pepper plants elicits defence responses against bacterial pathogens in leaves and roots and changes the below-ground microflora","volume":"99","author":"Yang","year":"2011","journal-title":"J.\u00a0Ecol."},{"key":"10.1016\/j.cell.2017.04.025_bib108","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.agee.2005.06.018","article-title":"Soil algae composition under different agro-ecosystems in North-Eastern Italy","volume":"112","author":"Zancan","year":"2006","journal-title":"Agr. Ecosyst. Environ."},{"key":"10.1016\/j.cell.2017.04.025_bib109","doi-asserted-by":"crossref","first-page":"e02527","DOI":"10.1128\/mBio.02527-14","article-title":"The soil microbiome influences grapevine-associated microbiota","volume":"6","author":"Zarraonaindia","year":"2015","journal-title":"MBio"},{"key":"10.1016\/j.cell.2017.04.025_bib110","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1016\/j.chom.2012.04.014","article-title":"Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation","volume":"11","author":"Zheng","year":"2012","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.cell.2017.04.025_bib111","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1016\/j.it.2014.05.004","article-title":"Plant pattern-recognition receptors","volume":"35","author":"Zipfel","year":"2014","journal-title":"Trends Immunol."}],"container-title":["Cell"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0092867417304762?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0092867417304762?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,25]],"date-time":"2025-09-25T11:27:58Z","timestamp":1758799678000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0092867417304762"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,5]]},"references-count":111,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2017,5]]}},"alternative-id":["S0092867417304762"],"URL":"https:\/\/doi.org\/10.1016\/j.cell.2017.04.025","relation":{},"ISSN":["0092-8674"],"issn-type":[{"value":"0092-8674","type":"print"}],"subject":[],"published":{"date-parts":[[2017,5]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Communication in the Phytobiome","name":"articletitle","label":"Article Title"},{"value":"Cell","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.cell.2017.04.025","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2017 Elsevier Inc.","name":"copyright","label":"Copyright"}]}}