{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,9]],"date-time":"2026-10-09T20:01:39Z","timestamp":1791576099906,"version":"4.3.4"},"reference-count":81,"publisher":"Elsevier BV","issue":"7","license":[{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,1,20]],"date-time":"2022-01-20T00:00:00Z","timestamp":1642636800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Cell Reports"],"published-print":{"date-parts":[[2022,2]]},"DOI":"10.1016\/j.celrep.2022.110352","type":"journal-article","created":{"date-parts":[[2022,2,15]],"date-time":"2022-02-15T11:55:10Z","timestamp":1644926110000},"page":"110352","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":23,"title":["Activation-induced chromatin reorganization in neurons depends on HDAC1 activity"],"prefix":"10.1016","volume":"38","author":[{"given":"Agnieszka","family":"Grabowska","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hanna","family":"Sas-Nowosielska","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9967-910X","authenticated-orcid":false,"given":"Bartosz","family":"Wojtas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dagmara","family":"Holm-Kaczmarek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elzbieta","family":"Januszewicz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yana","family":"Yushkevich","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Iwona","family":"Czaban","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pawel","family":"Trzaskoma","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Katarzyna","family":"Krawczyk","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bartlomiej","family":"Gielniewski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7897-4118","authenticated-orcid":false,"given":"Ana","family":"Martin-Gonzalez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert Kuba","family":"Filipkowski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2114-4487","authenticated-orcid":false,"given":"Krzysztof Hubert","family":"Olszynski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0841-5940","authenticated-orcid":false,"given":"Tytus","family":"Bernas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andrzej Antoni","family":"Szczepankiewicz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Malgorzata Alicja","family":"Sliwinska","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tambudzai","family":"Kanhema","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Clive R.","family":"Bramham","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5470-1676","authenticated-orcid":false,"given":"Grzegorz","family":"Bokota","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3840-7610","authenticated-orcid":false,"given":"Dariusz","family":"Plewczynski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Grzegorz Marek","family":"Wilczynski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0517-7134","authenticated-orcid":false,"given":"Adriana","family":"Magalska","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.celrep.2022.110352_bib1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.nbd.2016.05.018","article-title":"Cognitive deficits triggered by early life stress: the role of histone deacetylase 1","volume":"94","author":"Adler","year":"2016","journal-title":"Neurobiol. Dis."},{"key":"10.1016\/j.celrep.2022.110352_bib2","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1038\/163676a0","article-title":"A morphological distinction between neurones of the male and female, and the behaviour of the nucleolar satellite during accelerated nucleoprotein synthesis","volume":"163","author":"Barr","year":"1949","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110352_bib3","first-page":"171","article-title":"The behaviour of nuclear structures during depletion and restoration of Nissl material in motor neurons","volume":"85","author":"Barr","year":"1951","journal-title":"J.\u00a0Anat."},{"key":"10.1016\/j.celrep.2022.110352_bib4","doi-asserted-by":"crossref","first-page":"711","DOI":"10.1369\/jhc.2008.951251","article-title":"Histone modifications and nuclear architecture: a review","volume":"56","author":"B\u00e1rtov\u00e1","year":"2008","journal-title":"J.\u00a0Histochem. Cytochem."},{"key":"10.1016\/j.celrep.2022.110352_bib5","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1038\/s41593-020-0634-6","article-title":"Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression","volume":"23","author":"Beagan","year":"2020","journal-title":"Nat. Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib6","doi-asserted-by":"crossref","first-page":"1071","DOI":"10.1007\/s12035-014-8772-z","article-title":"The neuronal activity-driven transcriptome","volume":"51","author":"Benito","year":"2015","journal-title":"Mol. Neurobiol."},{"key":"10.1016\/j.celrep.2022.110352_bib7","doi-asserted-by":"crossref","first-page":"103","DOI":"10.4161\/trns.2.3.16172","article-title":"Inhibiting eukaryotic transcription: which compound to choose? how to evaluate its activity?","volume":"2","author":"Bensaude","year":"2011","journal-title":"Transcription"},{"key":"10.1016\/j.celrep.2022.110352_bib8","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/0169-328X(92)90016-5","article-title":"Rearrangement of centromeric satellite DNA in hippocampal neurons exhibiting long-term potentiation","volume":"14","author":"Billia","year":"1992","journal-title":"Mol. Brain Res."},{"key":"10.1016\/j.celrep.2022.110352_bib9","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1186\/s12859-021-03984-1","article-title":"PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies","volume":"22","author":"Bokota","year":"2021","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.celrep.2022.110352_bib10","doi-asserted-by":"crossref","first-page":"677","DOI":"10.1016\/j.molcel.2010.08.009","article-title":"Hos1 deacetylates Smc3 to close the cohesin acetylation cycle","volume":"39","author":"Borges","year":"2010","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib11","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12864-020-6580-6","article-title":"Biased visibility in Hi-C datasets marks dynamically regulated condensed and decondensed chromatin states genome-wide","volume":"21","author":"Chandradoss","year":"2020","journal-title":"BMC Genomics"},{"key":"10.1016\/j.celrep.2022.110352_bib12","doi-asserted-by":"crossref","first-page":"834","DOI":"10.1126\/science.1175371","article-title":"Lysine acetylation targets protein complexes and co-regulates major cellular functions","volume":"325","author":"Choudhary","year":"2009","journal-title":"Science"},{"key":"10.1016\/j.celrep.2022.110352_bib13","first-page":"205","article-title":"Multicolor 3D Fluorescence in situ hybridization for imaging interphase chromosomes","volume":"1","author":"Cremer","year":"2012"},{"key":"10.1016\/j.celrep.2022.110352_bib14","doi-asserted-by":"crossref","first-page":"2931","DOI":"10.1016\/j.febslet.2015.05.037","article-title":"The 4D nucleome: evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments","volume":"589","author":"Cremer","year":"2015","journal-title":"FEBS Lett."},{"key":"10.1016\/j.celrep.2022.110352_bib15","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1002\/bies.201900132","article-title":"The interchromatin compartment participates in the structural and functional organization of the cell nucleus","volume":"42","author":"Cremer","year":"2020","journal-title":"BioEssays"},{"key":"10.1016\/j.celrep.2022.110352_bib16","first-page":"6","article-title":"NCMIR methods for 3D EM: a new protocol for preparation of biological specimens for serial block face scanning electron microscopy","author":"Deerinck","year":"2010","journal-title":"Microscopy"},{"key":"10.1016\/j.celrep.2022.110352_bib17","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1093\/bioinformatics\/bts635","article-title":"STAR: ultrafast universal RNA-seq aligner","volume":"29","author":"Dobin","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2022.110352_bib18","doi-asserted-by":"crossref","first-page":"8242","DOI":"10.1073\/pnas.1000478107","article-title":"Histone deacetylase 1 (HDAC1), but not HDAC2, controls embryonic stem cell differentiation","volume":"107","author":"Dovey","year":"2010","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.celrep.2022.110352_bib19","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1002\/cmdc.201300444","article-title":"Lysine deacetylase (KDAC) regulatory pathways: an alternative approach to selective modulation","volume":"9","author":"Van Dyke","year":"2014","journal-title":"ChemMedChem"},{"key":"10.1016\/j.celrep.2022.110352_bib20","doi-asserted-by":"crossref","first-page":"2795","DOI":"10.1073\/pnas.95.6.2795","article-title":"Characterization of a human RPD3 ortholog Hdac3","volume":"95","author":"Emiliani","year":"1998","journal-title":"Proc. Natl. Acad. Sci. U S A"},{"key":"10.1016\/j.celrep.2022.110352_bib21","doi-asserted-by":"crossref","first-page":"2262","DOI":"10.1016\/j.bpj.2018.03.011","article-title":"Formation of chromatin subcompartments by phase separation","volume":"114","author":"Erdel","year":"2018","journal-title":"Biophys. J."},{"key":"10.1016\/j.celrep.2022.110352_bib22","doi-asserted-by":"crossref","first-page":"1718","DOI":"10.1038\/s41593-019-0476-2","article-title":"Immediate and deferred epigenomic signatures of in\u00a0vivo neuronal activation in mouse hippocampus","volume":"22","author":"Fernandez-Albert","year":"2019","journal-title":"Nat. Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib23","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1101\/lm.7.2.116","article-title":"Tactile experience induces c-Fos expression in rat barrel cortex","volume":"7","author":"Filipkowski","year":"2000","journal-title":"Learn. Mem."},{"key":"10.1016\/j.celrep.2022.110352_bib24","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1016\/S0306-4522(01)00310-4","article-title":"Expression of c-Fos, Fos B, Jun B, and Zif268 transcription factor proteins in rat barrel cortex following apomorphine-evoked whisking behavior","volume":"106","author":"Filipkowski","year":"2001","journal-title":"Neuroscience"},{"key":"10.1016\/j.celrep.2022.110352_bib25","doi-asserted-by":"crossref","first-page":"6457","DOI":"10.1126\/science.aaw9498","article-title":"Molecular basis and biological function of variability in spatial genome organization","volume":"365","author":"Finn","year":"2019","journal-title":"Science"},{"key":"10.1016\/j.celrep.2022.110352_bib26","doi-asserted-by":"crossref","first-page":"1502","DOI":"10.1016\/j.cell.2019.01.020","article-title":"Extensive heterogeneity and intrinsic variation in spatial genome organization","volume":"176","author":"Finn","year":"2019","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib27","doi-asserted-by":"crossref","first-page":"2511","DOI":"10.1007\/s00429-015-1053-4","article-title":"Localization and regulation of PML bodies in the adult mouse brain","volume":"221","author":"Hall","year":"2016","journal-title":"Brain Struct. Funct."},{"key":"10.1016\/j.celrep.2022.110352_bib28","doi-asserted-by":"crossref","first-page":"747","DOI":"10.1017\/S1431927610094092","article-title":"Streamlined embedding of cell monolayers on gridded glass-bottom imaging dishes for correlative light and electron microscopy","volume":"16","author":"Hanson","year":"2010","journal-title":"Microsc. Microanal."},{"key":"10.1016\/j.celrep.2022.110352_bib29","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1016\/S0920-1211(98)00017-5","article-title":"Recurrent spontaneous motor seizures after repeated low-dose systemic treatment with kainate: assessment of a rat model of temporal lobe epilepsy","volume":"31","author":"Hellier","year":"1998","journal-title":"Epilepsy Res."},{"key":"10.1016\/j.celrep.2022.110352_bib30","doi-asserted-by":"crossref","first-page":"1768","DOI":"10.1002\/jnr.21634","article-title":"Calcium-dependent production of reactive oxygen species is involved in neuronal damage induced during glycolysis inhibition in cultured hippocampal neurons","volume":"86","author":"Hern\u00e1ndez-Fonseca","year":"2008","journal-title":"J.\u00a0Neurosci. Res."},{"key":"10.1016\/j.celrep.2022.110352_bib31","doi-asserted-by":"crossref","first-page":"4450","DOI":"10.1038\/ncomms5450","article-title":"Loss of neuronal 3d chromatin organization causes transcriptional and behavioural deficits related to serotonergic dysfunction","volume":"5","author":"Ito","year":"2014","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2022.110352_bib32","doi-asserted-by":"crossref","first-page":"6450","DOI":"10.1093\/nar\/gkn688","article-title":"The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications","volume":"36","author":"Jahnke","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2022.110352_bib33","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1038\/nn.4170","article-title":"Stimulus-specific combinatorial functionality of neuronal c-fos enhancers","volume":"19","author":"Joo","year":"2015","journal-title":"Nat. Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib34","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1016\/S0165-0173(97)00005-2","article-title":"Sensory regulation of immediate-early gene expression in mammalian visual cortex: implications for functional mapping and neural plasticity","volume":"23","author":"Kaczmarek","year":"1997","journal-title":"Brain Res. Rev."},{"key":"10.1016\/j.celrep.2022.110352_bib36","doi-asserted-by":"crossref","first-page":"854","DOI":"10.1038\/nrd2681","article-title":"Therapeutic application of histone deacetylase inhibitors for central nervous system disorders","volume":"7","author":"Kazantsev","year":"2008","journal-title":"Nat. Rev. Drug Discov."},{"key":"10.1016\/j.celrep.2022.110352_bib37","doi-asserted-by":"crossref","first-page":"1289","DOI":"10.1093\/bioinformatics\/btm091","article-title":"Enhancements and modifications of primer design program primer3","volume":"23","author":"Koressaar","year":"2007","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2022.110352_bib38","first-page":"713","article-title":"A fast algorithm for multilevel thresholding","volume":"17","author":"Liao","year":"2001","journal-title":"J.\u00a0Inf. Sci. Eng."},{"key":"10.1016\/j.celrep.2022.110352_bib39","doi-asserted-by":"crossref","first-page":"923","DOI":"10.1093\/bioinformatics\/btt656","article-title":"Featurecounts: an efficient general purpose program for assigning sequence reads to genomic features","volume":"30","author":"Liao","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2022.110352_bib40","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1006\/meth.2001.1262","article-title":"Analysis of relative gene expression data using real-time quantitative PCR and the 2-\u0394\u0394CT method","volume":"25","author":"Livak","year":"2001","journal-title":"Methods"},{"key":"10.1016\/j.celrep.2022.110352_bib41","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"10.1016\/j.celrep.2022.110352_bib42","doi-asserted-by":"crossref","first-page":"521","DOI":"10.1016\/j.molcel.2020.06.007","article-title":"Robust Hi-C maps of enhancer-promoter interactions reveal the function of non-coding genome in neural development and diseases","volume":"79","author":"Lu","year":"2020","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib43","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fnins.2015.00351","article-title":"Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity","volume":"9","author":"Maag","year":"2015","journal-title":"Front. Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib44","doi-asserted-by":"crossref","first-page":"250","DOI":"10.1186\/s12864-017-3621-x","article-title":"Widespread promoter methylation of synaptic plasticity genes in long-term potentiation in the adult brain in\u00a0vivo","volume":"18","author":"Maag","year":"2017","journal-title":"BMC Genomics"},{"key":"10.1016\/j.celrep.2022.110352_bib45","doi-asserted-by":"crossref","first-page":"834","DOI":"10.1016\/j.cub.2018.05.019","article-title":"Cohesin and chromosome segregation","volume":"28","author":"Makrantoni","year":"2018","journal-title":"Curr. Biol."},{"key":"10.1016\/j.celrep.2022.110352_bib46","doi-asserted-by":"crossref","first-page":"1330","DOI":"10.1038\/nn.3808","article-title":"Genome-wide identification and characterization of functional neuronal activity-dependent enhancers","volume":"17","author":"Malik","year":"2014","journal-title":"Nat. Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib47","doi-asserted-by":"crossref","first-page":"1606","DOI":"10.1038\/s41593-020-00717-0","article-title":"Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble","volume":"23","author":"Marco","year":"2020","journal-title":"Nat. Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib48","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1007\/s00418-018-1703-8","article-title":"Perichromatin region: a moveable feast","volume":"150","author":"Masiello","year":"2018","journal-title":"Histochem. Cell Biol."},{"key":"10.1016\/j.celrep.2022.110352_bib49","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1016\/j.cell.2020.09.014","article-title":"The self-organizing genome: principles of genome architecture and function","volume":"183","author":"Misteli","year":"2020","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib50","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1016\/j.yexcr.2010.10.026","article-title":"Transcribed DNA is preferentially located in the perichromatin region of mammalian cell nuclei","volume":"317","author":"Niedojadlo","year":"2011","journal-title":"Exp. Cell Res."},{"key":"10.1016\/j.celrep.2022.110352_bib51","doi-asserted-by":"crossref","first-page":"2389","DOI":"10.1093\/bioinformatics\/btu202","article-title":"ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging","volume":"30","author":"Ovesn\u00fd","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2022.110352_bib52","first-page":"390","article-title":"The statistical-mechanics of chromosome conformation capture","volume":"4","author":"O\u2019Sullivan","year":"2013","journal-title":"Nucl. (United States"},{"key":"10.1016\/j.celrep.2022.110352_bib53","doi-asserted-by":"crossref","first-page":"1913","DOI":"10.1128\/EC.00217-07","article-title":"Class I histone deacetylase Thd1p promotes global chromatin condensation in tetrahymena thermophila","volume":"6","author":"Parker","year":"2007","journal-title":"Eukaryot. Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib54","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1016\/j.neuron.2008.09.040","article-title":"A calcium-dependent switch in a CREST-BRG1 complex regulates activity-dependent gene expression","volume":"60","author":"Qiu","year":"2008","journal-title":"Neuron"},{"key":"10.1016\/j.celrep.2022.110352_bib55","doi-asserted-by":"crossref","first-page":"104722","DOI":"10.1016\/j.nbd.2019.104722","article-title":"Defining molecular identity and fates of CNS-border associated macrophages after ischemic stroke in rodents and humans","volume":"137","author":"Rajan","year":"2020","journal-title":"Neurobiol. Dis."},{"key":"10.1016\/j.celrep.2022.110352_bib56","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1016\/S0006-8993(98)00294-7","article-title":"Immediate-early gene expression in the amygdala following footshock stress and contextual fear conditioning","volume":"796","author":"Rosen","year":"1998","journal-title":"Brain Res."},{"key":"10.1016\/j.celrep.2022.110352_bib57","doi-asserted-by":"crossref","first-page":"848","DOI":"10.1038\/nn.2839","article-title":"Rapid activity-induced transcription of Arc and other IEGs relies on poised RNA polymerase II","volume":"14","author":"Saha","year":"2011","journal-title":"Nat. Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib58","first-page":"139","article-title":"Multiscale opening of conjoined fuzzy objects: theory and applications","volume":"176","author":"Saha","year":"2017","journal-title":"Physiol. Behav."},{"key":"10.1016\/j.celrep.2022.110352_bib59","doi-asserted-by":"crossref","first-page":"723","DOI":"10.1016\/S0306-4522(99)00331-0","article-title":"Defensive conditioning-related functional heterogeneity among nuclei of the rat amygdala revealed by c-Fos mapping","volume":"94","author":"Savonenko","year":"1999","journal-title":"Neuroscience"},{"key":"10.1016\/j.celrep.2022.110352_bib60","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1002\/wrna.1514","article-title":"Membraneless nuclear organelles and the search for phases within phases","volume":"10","author":"Sawyer","year":"2019","journal-title":"Wiley Interdiscip. Rev. RNA"},{"key":"10.1016\/j.celrep.2022.110352_bib61","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1038\/nmeth.2019","article-title":"Fiji: an open-source platform for biological-image analysis","volume":"9","author":"Schindelin","year":"2012","journal-title":"Nat. Methods"},{"key":"10.1016\/j.celrep.2022.110352_bib62","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1038\/nature24281","article-title":"Two independent modes of chromatin organization revealed by cohesin removal","volume":"551","author":"Schwarzer","year":"2017","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110352_bib63","doi-asserted-by":"crossref","first-page":"86","DOI":"10.1016\/j.brainresbull.2019.05.011","article-title":"Regulation of HDAC1 and HDAC2 during consolidation and extinction of fear memory","volume":"150","author":"Siddiqui","year":"2019","journal-title":"Brain Res. Bull."},{"key":"10.1016\/j.celrep.2022.110352_bib64","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1371\/journal.pone.0239111","article-title":"The interplay of seizures-induced axonal sprouting and transcription-dependent Bdnf repositioning in the model of temporal lobe epilepsy","volume":"16","author":"Skupien-Jaroszek","year":"2021","journal-title":"PLoS One"},{"key":"10.1016\/j.celrep.2022.110352_bib65","doi-asserted-by":"crossref","first-page":"2573","DOI":"10.1093\/cercor\/bhz261","article-title":"Long-Term memory upscales volume of postsynaptic densities in the process that requires autophosphorylation of \u03b1CaMKII","volume":"30","author":"Sliwi\u0144ska","year":"2020","journal-title":"Cereb. Cortex"},{"key":"10.1016\/j.celrep.2022.110352_bib66","first-page":"1","article-title":"Spatially resolved quantification of chromatin condensation through differential local rheology in cell nuclei fluorescence lifetime imaging","volume":"11","author":"Spagnol","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.celrep.2022.110352_bib67","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1038\/nature22989","article-title":"Phase separation drives heterochromatin domain formation","volume":"547","author":"Strom","year":"2017","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110352_bib68","doi-asserted-by":"crossref","first-page":"e63314","DOI":"10.1371\/journal.pone.0063314","article-title":"Matrix metalloproteinases regulate the formation of dendritic spine head protrusions during chemically induced Long-Term Potentiation","volume":"8","author":"Szepesi","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.celrep.2022.110352_bib69","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13041-018-0387-2","article-title":"Stimulation-induced structural changes at the nucleus, endoplasmic reticulum and mitochondria of hippocampal neurons","volume":"11","author":"Tao-Cheng","year":"2018","journal-title":"Mol. Brain"},{"key":"10.1016\/j.celrep.2022.110352_bib70","first-page":"5","article-title":"De novo NIPBL mutations in vietnamese patients with cornelia de lange syndrome","volume":"56","author":"Thanh","year":"2020","journal-title":"Med."},{"key":"10.1016\/j.celrep.2022.110352_bib71","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41467-020-15987-2","article-title":"Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization","volume":"11","author":"Trzaskoma","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2022.110352_bib72","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/nar\/gks596","article-title":"Primer3-new capabilities and interfaces","volume":"40","author":"Untergasser","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2022.110352_bib73","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1111\/boc.201600032","article-title":"Chromatin decondensation is accompanied by a transient increase in transcriptional output","volume":"109","author":"Va\u0148kov\u00e1 Hausnerov\u00e1","year":"2017","journal-title":"Biol. Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib74","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1111\/j.1601-5223.1984.tb00915.x","article-title":"A new banding technique of rat Rattus norvegicus chromosomes","volume":"101","author":"Vernole","year":"1984","journal-title":"Hereditas"},{"key":"10.1016\/j.celrep.2022.110352_bib75","doi-asserted-by":"crossref","first-page":"1165","DOI":"10.1016\/j.cell.2018.03.072","article-title":"The energetics and physiological impact of cohesin extrusion","volume":"173","author":"Vian","year":"2018","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib76","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1016\/j.nepig.2014.10.002","article-title":"Histone deacetylases (HDACs) and brain function","volume":"1","author":"Volmar","year":"2015","journal-title":"Neuroepigenetics"},{"key":"10.1016\/j.celrep.2022.110352_bib77","doi-asserted-by":"crossref","first-page":"2507","DOI":"10.1523\/JNEUROSCI.1085-12.2013","article-title":"Novel higher-order epigenetic regulation of the Bdnf gene upon seizures","volume":"33","author":"Walczak","year":"2013","journal-title":"J.\u00a0Neurosci."},{"key":"10.1016\/j.celrep.2022.110352_bib78","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1083\/jcb.200708213","article-title":"Important role of matrix metalloproteinase 9 in epileptogenesis","volume":"180","author":"Wilczynski","year":"2008","journal-title":"J.\u00a0Cell Biol."},{"key":"10.1016\/j.celrep.2022.110352_bib79","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1016\/j.molcel.2005.10.002","article-title":"The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast","volume":"20","author":"Yamada","year":"2005","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2022.110352_bib80","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1016\/j.neuron.2018.10.013","article-title":"Activity-regulated transcription: bridging the gap between neural activity and behavior","volume":"100","author":"Yap","year":"2018","journal-title":"Neuron"},{"key":"10.1016\/j.celrep.2022.110352_bib81","doi-asserted-by":"crossref","first-page":"827","DOI":"10.1016\/S1525-0016(03)00104-7","article-title":"Lentiviral vectors with two independent internal promoters transfer high-level expression of multiple transgenes to human hematopoietic stem-progenitor cells","volume":"7","author":"Yu","year":"2003","journal-title":"Mol. Ther."},{"key":"10.1016\/j.celrep.2022.110352_bib82","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1089\/omi.2011.0118","article-title":"ClusterProfiler: an R package for comparing biological themes among gene clusters","volume":"16","author":"Yu","year":"2012","journal-title":"Omi. A. J. Integr. Biol."}],"container-title":["Cell Reports"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124722000687?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124722000687?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T11:37:34Z","timestamp":1761910654000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2211124722000687"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,2]]},"references-count":81,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2022,2]]}},"alternative-id":["S2211124722000687"],"URL":"https:\/\/doi.org\/10.1016\/j.celrep.2022.110352","relation":{},"ISSN":["2211-1247"],"issn-type":[{"value":"2211-1247","type":"print"}],"subject":[],"published":{"date-parts":[[2022,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Activation-induced chromatin reorganization in neurons depends on HDAC1 activity","name":"articletitle","label":"Article Title"},{"value":"Cell Reports","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.celrep.2022.110352","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2022 The Author(s).","name":"copyright","label":"Copyright"}],"article-number":"110352"}}