{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,21]],"date-time":"2026-10-21T13:05:08Z","timestamp":1792587908187,"version":"4.5.0"},"reference-count":72,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2022,4,1]],"date-time":"2022-04-01T00:00:00Z","timestamp":1648771200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,4,1]],"date-time":"2022-04-01T00:00:00Z","timestamp":1648771200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,4,8]],"date-time":"2022-04-08T00:00:00Z","timestamp":1649376000000},"content-version":"vor","delay-in-days":7,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001665","name":"Agence Nationale de la Recherche","doi-asserted-by":"publisher","award":["ANR-20-CO11-0004"],"award-info":[{"award-number":["ANR-20-CO11-0004"]}],"id":[{"id":"10.13039\/501100001665","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100009516","name":"Universit\u00e9 Sorbonne Paris Cit\u00e9","doi-asserted-by":"publisher","award":["RACPL20FIR01-COVID-SOUL"],"award-info":[{"award-number":["RACPL20FIR01-COVID-SOUL"]}],"id":[{"id":"10.13039\/501100009516","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002915","name":"Fondation pour la Recherche Medicale","doi-asserted-by":"publisher","award":["FRM-EQU202003010193"],"award-info":[{"award-number":["FRM-EQU202003010193"]}],"id":[{"id":"10.13039\/501100002915","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007649","name":"\u00c9cole Normale Sup\u00e9rieure","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007649","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003762","name":"Institut Pasteur","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100003762","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Cell Reports"],"published-print":{"date-parts":[[2022,4]]},"DOI":"10.1016\/j.celrep.2022.110744","type":"journal-article","created":{"date-parts":[[2022,4,26]],"date-time":"2022-04-26T11:05:00Z","timestamp":1650971100000},"page":"110744","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":77,"title":["Characterization and functional interrogation of the SARS-CoV-2 RNA interactome"],"prefix":"10.1016","volume":"39","author":[{"given":"Ath\u00e9na","family":"Labeau","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luc","family":"Fery-Simonian","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3262-5334","authenticated-orcid":false,"given":"Alain","family":"Lefevre-Utile","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marie","family":"Pourcelot","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lucie","family":"Bonnet-Madin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vassili","family":"Soumelis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vincent","family":"Lotteau","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pierre-Olivier","family":"Vidalain","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0283-1815","authenticated-orcid":false,"given":"Ali","family":"Amara","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laurent","family":"Meertens","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.celrep.2022.110744_bib1","doi-asserted-by":"crossref","first-page":"1325","DOI":"10.1016\/j.cell.2020.10.004","article-title":"SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses","volume":"183","author":"Banerjee","year":"2020","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib2","doi-asserted-by":"crossref","first-page":"2657","DOI":"10.1007\/s00018-012-1186-z","article-title":"Insulin-like growth factor 2 mRNA-binding proteins (IGF2BPs): post-transcriptional drivers of cancer progression?","volume":"70","author":"Bell","year":"2013","journal-title":"Cell Mol. Life Sci."},{"key":"10.1016\/j.celrep.2022.110744_bib3","doi-asserted-by":"crossref","first-page":"1091","DOI":"10.1093\/bioinformatics\/btp101","article-title":"ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks","volume":"25","author":"Bindea","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2022.110744_bib4","doi-asserted-by":"crossref","first-page":"278","DOI":"10.1038\/nsmb.3182","article-title":"A structural ensemble of a ribosome\u2013nascent chain complex during cotranslational protein folding","volume":"23","author":"Cabrita","year":"2016","journal-title":"Nat. Struct. Mol. Biol."},{"key":"10.1016\/j.celrep.2022.110744_bib5","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1038\/s41586-021-03471-w","article-title":"Escape of SARS-CoV-2 501Y.V2 from neutralization by convalescent plasma","volume":"593","author":"Cele","year":"2021","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110744_bib6","doi-asserted-by":"crossref","first-page":"2000045","DOI":"10.2807\/1560-7917.ES.2020.25.3.2000045","article-title":"Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR","volume":"25","author":"Corman","year":"2020","journal-title":"Eurosurveillance"},{"key":"10.1016\/j.celrep.2022.110744_bib7","doi-asserted-by":"crossref","first-page":"853","DOI":"10.1016\/j.chom.2020.11.003","article-title":"Integrative imaging reveals SARS-CoV-2-induced reshaping of subcellular morphologies","volume":"28","author":"Cortese","year":"2020","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.celrep.2022.110744_bib8","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1016\/j.cell.2020.10.030","article-title":"Identification of required host factors for SARS-CoV-2 infection in human cells","volume":"184","author":"Daniloski","year":"2020","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib9","doi-asserted-by":"crossref","first-page":"2976","DOI":"10.1128\/JVI.80.6.2976-2986.2006","article-title":"Dengue virus utilizes a novel strategy for translation initiation when cap-dependent translation is inhibited","volume":"80","author":"Edgil","year":"2006","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.celrep.2022.110744_bib10","doi-asserted-by":"crossref","first-page":"3565","DOI":"10.1007\/s00018-020-03745-y","article-title":"Ultrastructural modifications induced by SARS-CoV-2 in Vero cells: a kinetic analysis of viral factory formation, viral particle morphogenesis and virion release","volume":"78","author":"Eymieux","year":"2021","journal-title":"Cell. Mol. Life Sci."},{"key":"10.1016\/j.celrep.2022.110744_bib11","doi-asserted-by":"crossref","first-page":"2887","DOI":"10.15252\/embj.201490425","article-title":"Making ends meet: a role of RNA ligase RTCB in unfolded protein response","volume":"33","author":"Filipowicz","year":"2014","journal-title":"EMBO J."},{"key":"10.1016\/j.celrep.2022.110744_bib12","doi-asserted-by":"crossref","first-page":"8691","DOI":"10.1128\/JVI.00813-10","article-title":"Association of the influenza virus RNA polymerase subunit PB2 with the host chaperonin CCT","volume":"84","author":"Fislov\u00e1","year":"2010","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.celrep.2022.110744_bib13","doi-asserted-by":"crossref","first-page":"2394","DOI":"10.1016\/j.cell.2021.03.012","article-title":"Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions","volume":"184","author":"Flynn","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib14","doi-asserted-by":"crossref","first-page":"296","DOI":"10.3389\/fmicb.2014.00296","article-title":"Coronavirus infection, ER stress, apoptosis and innate immunity","volume":"5","author":"Fung","year":"2014","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.celrep.2022.110744_bib15","doi-asserted-by":"crossref","first-page":"2372","DOI":"10.1016\/j.cell.2021.03.013","article-title":"Multiple SARS-CoV-2 variants escape neutralization by vaccine-induced humoral immunity","volume":"184","author":"Garcia-Beltran","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib16","doi-asserted-by":"crossref","first-page":"196","DOI":"10.1016\/j.molcel.2019.01.017","article-title":"System-wide profiling of RNA-binding proteins uncovers key regulators of virus infection","volume":"74","author":"Garcia-Moreno","year":"2019","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib17","doi-asserted-by":"crossref","first-page":"8460","DOI":"10.1128\/JVI.00240-11","article-title":"Enhancement of replication of RNA viruses by ADAR1 via RNA editing and inhibition of RNA-activated protein kinase","volume":"85","author":"G\u00e9linas","year":"2011","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.celrep.2022.110744_bib18","doi-asserted-by":"crossref","first-page":"851","DOI":"10.1007\/s00439-016-1683-5","article-title":"The hnRNP family: insights into their role in health and disease","volume":"135","author":"Geuens","year":"2016","journal-title":"Hum. Genet."},{"key":"10.1016\/j.celrep.2022.110744_bib19","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1038\/s41586-020-2286-9","article-title":"A SARS-CoV-2 protein interaction map reveals targets for drug repurposing","volume":"583","author":"Gordon","year":"2020","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110744_bib20","doi-asserted-by":"crossref","first-page":"eabe9403","DOI":"10.1126\/science.abe9403","article-title":"Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms","volume":"370","author":"Gordon","year":"2020","journal-title":"Science"},{"key":"10.1016\/j.celrep.2022.110744_bib21","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1073\/pnas.0607063104","article-title":"The zinc-finger antiviral protein recruits the RNA processing exosome to degrade the target mRNA","volume":"104","author":"Guo","year":"2007","journal-title":"Proc. Natl. Acad. Sci. U\u00a0S\u00a0A"},{"key":"10.1016\/j.celrep.2022.110744_bib22","doi-asserted-by":"crossref","first-page":"3900","DOI":"10.1016\/j.celrep.2017.11.094","article-title":"A global interactome map of the dengue virus NS1 identifies virus restriction and dependency host factors","volume":"21","author":"Hafirassou","year":"2017","journal-title":"Cell Rep."},{"key":"10.1016\/j.celrep.2022.110744_bib23","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1016\/j.chom.2020.12.009","article-title":"Functional interrogation of a SARS-CoV-2 host protein interactome identifies unique and shared coronavirus host factors","volume":"29","author":"Hoffmann","year":"2021","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.celrep.2022.110744_bib24","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1016\/j.virol.2010.10.026","article-title":"Chaperonin TRiC\/CCT participates in replication of hepatitis C virus genome via interaction with the viral NS5B protein","volume":"410","author":"Inoue","year":"2011","journal-title":"Virology"},{"key":"10.1016\/j.celrep.2022.110744_bib25","doi-asserted-by":"crossref","first-page":"998","DOI":"10.1038\/s41423-020-0514-8","article-title":"SARS-CoV-2 Orf9b suppresses type I interferon responses by targeting TOM70","volume":"17","author":"Jiang","year":"2020","journal-title":"Cell Mol. Immunol."},{"key":"10.1016\/j.celrep.2022.110744_bib26","doi-asserted-by":"crossref","first-page":"2851","DOI":"10.1016\/j.molcel.2021.05.023","article-title":"Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection","volume":"81","author":"Kamel","year":"2021","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib27","doi-asserted-by":"crossref","first-page":"914","DOI":"10.1016\/j.cell.2020.04.011","article-title":"The architecture of SARS-CoV-2 transcriptome","volume":"181","author":"Kim","year":"2020","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib28","doi-asserted-by":"crossref","first-page":"e1002397","DOI":"10.1371\/journal.ppat.1002397","article-title":"The splicing factor proline-glutamine rich (SFPQ\/PSF) is involved in influenza virus transcription","volume":"7","author":"Landeras-Bueno","year":"2011","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.celrep.2022.110744_bib29","doi-asserted-by":"crossref","first-page":"2838","DOI":"10.1016\/j.molcel.2021.04.022","article-title":"The SARS-CoV-2 RNA interactome","volume":"81","author":"Lee","year":"2021","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib30","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1016\/j.antiviral.2013.09.002","article-title":"The DEAD-box RNA helicase DDX5 acts as a positive regulator of Japanese encephalitis virus replication by binding to viral 3\u2032 UTR","volume":"100","author":"Li","year":"2013","journal-title":"Antivir. Res."},{"key":"10.1016\/j.celrep.2022.110744_bib31","first-page":"99","article-title":"Virus-host interactome and proteomic survey reveal potential virulence factors influencing SARS-CoV-2 pathogenesis","volume":"12","author":"Li","year":"2020","journal-title":"Med"},{"key":"10.1016\/j.celrep.2022.110744_bib32","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1080\/15476286.2019.1703069","article-title":"The RNA binding protein Quaking represses host interferon response by downregulating MAVS","volume":"17","author":"Liao","year":"2020","journal-title":"RNA Biol."},{"key":"10.1016\/j.celrep.2022.110744_bib33","doi-asserted-by":"crossref","first-page":"4220","DOI":"10.1016\/j.cell.2021.06.020","article-title":"Reduced neutralization of SARS-CoV-2 B.1.617 by vaccine and convalescent serum","volume":"184","author":"Liu","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib34","first-page":"678","article-title":"Striking antibody evasion manifested by the omicron variant of SARS-CoV-2","volume":"602","author":"Liu","year":"2021","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110744_bib35","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1186\/gb-2003-4-7-223","article-title":"Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression","volume":"4","author":"Mangus","year":"2003","journal-title":"Genome Biol."},{"key":"10.1016\/j.celrep.2022.110744_bib36","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1186\/s13007-018-0276-9","article-title":"RNA-binding protein immunoprecipitation as a tool to investigate plant miRNA processing interference by regulatory proteins of diverse origin","volume":"14","author":"Marmisolle","year":"2018","journal-title":"Plant Methods"},{"key":"10.1016\/j.celrep.2022.110744_bib37","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1038\/s41586-019-1578-4","article-title":"FHL1 is a major host factor for chikungunya virus infection","volume":"574","author":"Meertens","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110744_bib38","doi-asserted-by":"crossref","first-page":"e1009129","DOI":"10.1371\/journal.ppat.1009129","article-title":"Host restriction of emerging high-pathogenic bunyaviruses via MOV10 by targeting viral nucleoprotein and blocking ribonucleoprotein assembly","volume":"16","author":"Mo","year":"2020","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.celrep.2022.110744_bib39","doi-asserted-by":"crossref","first-page":"4020","DOI":"10.1038\/emboj.2012.251","article-title":"Alternative 3\u2032-end processing of long noncoding RNA initiates construction of nuclear paraspeckles","volume":"31","author":"Naganuma","year":"2012","journal-title":"EMBO J."},{"key":"10.1016\/j.celrep.2022.110744_bib40","doi-asserted-by":"crossref","first-page":"180150","DOI":"10.1098\/rsob.180150","article-title":"Molecular dissection of nuclear paraspeckles: towards understanding the emerging world of the RNP milieu","volume":"8","author":"Nakagawa","year":"2018","journal-title":"Open Biol."},{"key":"10.1016\/j.celrep.2022.110744_bib41","doi-asserted-by":"crossref","first-page":"8127","DOI":"10.1128\/JVI.74.17.8127-8134.2000","article-title":"Characterization of the coronavirus M protein and nucleocapsid interaction in infected cells","volume":"74","author":"Narayanan","year":"2000","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.celrep.2022.110744_bib42","doi-asserted-by":"crossref","first-page":"6625","DOI":"10.1128\/JVI.01006-12","article-title":"EWSR1 binds the hepatitis C virus cis-acting replication element and is required for efficient viral replication","volume":"87","author":"Oakland","year":"2013","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.celrep.2022.110744_bib43","article-title":"SARS-CoV-2 induces human plasmacytoid predendritic cell diversification via UNC93B and IRAK4","author":"Onodi","year":"2021","journal-title":"bioRxiv"},{"key":"10.1016\/j.celrep.2022.110744_bib44","doi-asserted-by":"crossref","first-page":"2369","DOI":"10.1038\/s41564-019-0518-2","article-title":"An RNA-centric dissection of host complexes controlling flavivirus infection","volume":"4","author":"Ooi","year":"2019","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.celrep.2022.110744_bib45","doi-asserted-by":"crossref","first-page":"3068","DOI":"10.1038\/s41467-018-05539-0","article-title":"A widespread alternate form of cap-dependent mRNA translation initiation","volume":"9","author":"de la Parra","year":"2018","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2022.110744_bib46","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1186\/s12967-020-02480-z","article-title":"The current landscape of coronavirus-host protein-protein interactions","volume":"18","author":"Perrin-Cocon","year":"2020","journal-title":"J.\u00a0Transl. Med."},{"key":"10.1016\/j.celrep.2022.110744_bib47","doi-asserted-by":"crossref","first-page":"1595","DOI":"10.1016\/S0140-6736(20)32137-1","article-title":"SARS-CoV-2 immunity: review and applications to phase 3 vaccine candidates","volume":"396","author":"Poland","year":"2020","journal-title":"Lancet"},{"key":"10.1016\/j.celrep.2022.110744_bib48","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1016\/S0092-8674(02)00627-X","article-title":"A conserved mRNA export machinery coupled to pre-mRNA splicing","volume":"108","author":"Reed","year":"2002","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib49","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1038\/s41564-020-00846-z","article-title":"The SARS-CoV-2 RNA\u2013protein interactome in infected human cells","volume":"6","author":"Schmidt","year":"2020","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.celrep.2022.110744_bib50","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1016\/j.cell.2020.12.006","article-title":"Genome-scale identification of SARS-CoV-2 and pan-coronavirus host factor networks","volume":"184","author":"Schneider","year":"2020","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib51","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1186\/s12985-019-1182-0","article-title":"Coronavirus envelope protein: current knowledge","volume":"16","author":"Schoeman","year":"2019","journal-title":"Virol. J."},{"key":"10.1016\/j.celrep.2022.110744_bib52","doi-asserted-by":"crossref","first-page":"959","DOI":"10.1038\/s41594-020-0511-8","article-title":"SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation","volume":"27","author":"Schubert","year":"2020","journal-title":"Nat. Struct. Mol. Biol."},{"key":"10.1016\/j.celrep.2022.110744_bib53","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res."},{"key":"10.1016\/j.celrep.2022.110744_bib54","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1186\/gb-2009-10-10-242","article-title":"The SR protein family","volume":"10","author":"Shepard","year":"2009","journal-title":"Genome Biol."},{"key":"10.1016\/j.celrep.2022.110744_bib55","series-title":"Advances in Virus Research","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1016\/bs.aivir.2016.08.008","article-title":"Chapter three - the nonstructural proteins directing coronavirus RNA synthesis and processing","author":"Snijder","year":"2016"},{"key":"10.1016\/j.celrep.2022.110744_bib56","doi-asserted-by":"crossref","first-page":"1865","DOI":"10.1016\/j.cell.2021.02.008","article-title":"In\u00a0vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs","volume":"184","author":"Sun","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib57","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.jprot.2013.10.023","article-title":"SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software","volume":"100","author":"Teo","year":"2014","journal-title":"J.\u00a0Proteomics"},{"key":"10.1016\/j.celrep.2022.110744_bib58","doi-asserted-by":"crossref","first-page":"e55500","DOI":"10.7554\/eLife.55500","article-title":"Viral-induced alternative splicing of host genes promotes influenza replication","volume":"9","author":"Thompson","year":"2020","journal-title":"Elife"},{"key":"10.1016\/j.celrep.2022.110744_bib59","doi-asserted-by":"crossref","first-page":"e42037","DOI":"10.7554\/eLife.42037","article-title":"Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling","volume":"8","author":"V\u2019kovski","year":"2019","journal-title":"Elife"},{"key":"10.1016\/j.celrep.2022.110744_bib60","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1038\/s41579-020-00468-6","article-title":"Coronavirus biology and replication: implications for SARS-CoV-2","volume":"19","author":"V\u2019kovski","year":"2021","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.celrep.2022.110744_bib61","doi-asserted-by":"crossref","first-page":"e0131621","DOI":"10.1128\/mBio.01316-21","article-title":"MOV10 helicase interacts with coronavirus nucleocapsid protein and has antiviral activity","volume":"12","author":"Wang","year":"2021","journal-title":"mBio"},{"key":"10.1016\/j.celrep.2022.110744_bib62","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1038\/s41422-020-0282-0","article-title":"Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in\u00a0vitro","volume":"30","author":"Wang","year":"2020","journal-title":"Cell Res."},{"key":"10.1016\/j.celrep.2022.110744_bib63","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1016\/j.cell.2020.12.004","article-title":"Genetic screens identify host factors for SARS-CoV-2 and common cold coronaviruses","volume":"184","author":"Wang","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib64","first-page":"116","article-title":"ILF3 contributes to the establishment of the antiviral type I interferon program","volume":"48","author":"Watson","year":"2020","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2022.110744_bib65","doi-asserted-by":"crossref","first-page":"76","DOI":"10.1016\/j.cell.2020.10.028","article-title":"Genome-wide CRISPR screens reveal host factors critical for SARS-CoV-2 infection","volume":"184","author":"Wei","year":"2020","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib66","first-page":"1","article-title":"Host factors in coronavirus replication","volume":"419","author":"de Wilde","year":"2018","journal-title":"Curr. Top Microbiol. Immunol."},{"key":"10.1016\/j.celrep.2022.110744_bib67","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1016\/j.cell.2020.03.046","article-title":"G3BP1 is a tunable switch that triggers phase separation to assemble stress granules","volume":"181","author":"Yang","year":"2020","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib68","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1016\/j.bbrc.2019.01.032","article-title":"Exploitation of nuclear protein SFPQ by the encephalomyocarditis virus to facilitate its replication","volume":"510","author":"Zhou","year":"2019","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"10.1016\/j.celrep.2022.110744_bib69","doi-asserted-by":"crossref","first-page":"2348","DOI":"10.1016\/j.cell.2021.02.037","article-title":"Evidence of escape of SARS-CoV-2 variant B.1.351 from natural and vaccine-induced sera","volume":"184","author":"Zhou","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2022.110744_bib70","doi-asserted-by":"crossref","first-page":"270","DOI":"10.1038\/s41586-020-2012-7","article-title":"A pneumonia outbreak associated with a new coronavirus of probable bat origin","volume":"579","author":"Zhou","year":"2020","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2022.110744_bib71","doi-asserted-by":"crossref","first-page":"1523","DOI":"10.1038\/s41467-019-09234-6","article-title":"Metascape provides a biologist-oriented resource for the analysis of systems-level datasets","volume":"10","author":"Zhou","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2022.110744_bib72","doi-asserted-by":"crossref","first-page":"727","DOI":"10.1056\/NEJMoa2001017","article-title":"A novel coronavirus from patients with pneumonia in China, 2019","volume":"382","author":"Zhu","year":"2020","journal-title":"N.\u00a0Engl. J. Med."}],"container-title":["Cell Reports"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124722005083?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124722005083?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,15]],"date-time":"2026-05-15T10:47:54Z","timestamp":1778842074000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2211124722005083"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,4]]},"references-count":72,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2022,4]]}},"alternative-id":["S2211124722005083"],"URL":"https:\/\/doi.org\/10.1016\/j.celrep.2022.110744","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2021.03.23.436611","asserted-by":"object"}]},"ISSN":["2211-1247"],"issn-type":[{"value":"2211-1247","type":"print"}],"subject":[],"published":{"date-parts":[[2022,4]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Characterization and functional interrogation of the SARS-CoV-2 RNA interactome","name":"articletitle","label":"Article Title"},{"value":"Cell Reports","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.celrep.2022.110744","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2022 The Authors.","name":"copyright","label":"Copyright"}],"article-number":"110744"}}