{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,19]],"date-time":"2026-09-19T15:07:46Z","timestamp":1789830466737,"version":"4.0.1"},"reference-count":87,"publisher":"Elsevier BV","issue":"5","license":[{"start":{"date-parts":[[2024,5,1]],"date-time":"2024-05-01T00:00:00Z","timestamp":1714521600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,5,1]],"date-time":"2024-05-01T00:00:00Z","timestamp":1714521600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,4,26]],"date-time":"2024-04-26T00:00:00Z","timestamp":1714089600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100010730","name":"Temasek Life Sciences Laboratory Ltd","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100010730","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Cell Reports"],"published-print":{"date-parts":[[2024,5]]},"DOI":"10.1016\/j.celrep.2024.114228","type":"journal-article","created":{"date-parts":[[2024,5,11]],"date-time":"2024-05-11T18:05:03Z","timestamp":1715450703000},"page":"114228","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":12,"title":["Genetic compensation between ribosomal protein paralogs mediated by a cognate circular RNA"],"prefix":"10.1016","volume":"43","author":[{"given":"Amanda Yunn Ee","family":"Ng","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Seow Neng","family":"Chan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6089-6900","authenticated-orcid":false,"given":"Jun Wei","family":"Pek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.celrep.2024.114228_bib1","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1038\/40618","article-title":"Evolution of genetic redundancy","volume":"388","author":"Nowak","year":"1997","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2024.114228_bib2","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1038\/nrm3359","article-title":"Specialized ribosomes: a new frontier in gene regulation and organismal biology","volume":"13","author":"Xue","year":"2012","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib3","doi-asserted-by":"crossref","first-page":"364","DOI":"10.1016\/j.molcel.2018.07.018","article-title":"The Discovery of Ribosome Heterogeneity and Its Implications for Gene Regulation and Organismal Life","volume":"71","author":"Genuth","year":"2018","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib4","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1016\/j.tibs.2021.07.001","article-title":"Translational control through ribosome heterogeneity and functional specialization","volume":"47","author":"Gay","year":"2022","journal-title":"Trends Biochem. Sci."},{"key":"10.1016\/j.celrep.2024.114228_bib5","doi-asserted-by":"crossref","first-page":"2240","DOI":"10.1093\/nar\/gkab606","article-title":"Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching","volume":"50","author":"Hopes","year":"2022","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2024.114228_bib6","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1186\/1471-2199-11-33","article-title":"The human RPS4 paralogue on Yq11.223 encodes a structurally conserved ribosomal protein and is preferentially expressed during spermatogenesis","volume":"11","author":"Lopes","year":"2010","journal-title":"BMC Mol. Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib7","doi-asserted-by":"crossref","first-page":"dev199511","DOI":"10.1242\/dev.199511","article-title":"The Drosophila ribosome protein S5 paralog RpS5b promotes germ cell and follicle cell differentiation during oogenesis","volume":"148","author":"Jang","year":"2021","journal-title":"Development"},{"key":"10.1016\/j.celrep.2024.114228_bib8","doi-asserted-by":"crossref","first-page":"13779","DOI":"10.1038\/s41598-019-50357-z","article-title":"A ribosomal protein S5 isoform is essential for oogenesis and interacts with distinct RNAs in Drosophila melanogaster","volume":"9","author":"Kong","year":"2019","journal-title":"Sci. Rep."},{"key":"10.1016\/j.celrep.2024.114228_bib9","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1038\/s41586-022-05508-0","article-title":"A male germ-cell-specific ribosome controls male fertility","volume":"612","author":"Li","year":"2022","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2024.114228_bib10","doi-asserted-by":"crossref","first-page":"19537","DOI":"10.1073\/pnas.1214774109","article-title":"Arabidopsis ribosomal proteins control developmental programs through translational regulation of auxin response factors","volume":"109","author":"Rosado","year":"2012","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.celrep.2024.114228_bib11","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1038\/nature14010","article-title":"RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation","volume":"517","author":"Xue","year":"2015","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2024.114228_bib12","doi-asserted-by":"crossref","first-page":"3605","DOI":"10.1016\/j.celrep.2019.11.025","article-title":"On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons","volume":"29","author":"Shigeoka","year":"2019","journal-title":"Cell Rep."},{"key":"10.1016\/j.celrep.2024.114228_bib13","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1083\/jcb.201706059","article-title":"Specialized ribosomes and specific ribosomal protein paralogs control translation of mitochondrial proteins","volume":"217","author":"Segev","year":"2018","journal-title":"J.\u00a0Cell Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib14","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1534\/genetics.107.080267","article-title":"Analysis of the Drosophila melanogaster testes transcriptome reveals coordinate regulation of paralogous genes","volume":"179","author":"Mikhaylova","year":"2008","journal-title":"Genetics"},{"key":"10.1016\/j.celrep.2024.114228_bib15","doi-asserted-by":"crossref","first-page":"e1001255","DOI":"10.1371\/journal.pgen.1001255","article-title":"A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes","volume":"6","author":"Ding","year":"2010","journal-title":"PLoS Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib16","doi-asserted-by":"crossref","first-page":"17409","DOI":"10.1073\/pnas.1313759110","article-title":"Neofunctionalization of young duplicate genes in Drosophila","volume":"110","author":"Assis","year":"2013","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.celrep.2024.114228_bib17","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1016\/j.cell.2011.08.044","article-title":"Introns within ribosomal protein genes regulate the production and function of yeast ribosomes","volume":"147","author":"Parenteau","year":"2011","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib18","doi-asserted-by":"crossref","first-page":"2701","DOI":"10.1093\/nar\/gkq1218","article-title":"Expression of ribosomal protein L22e family members in Drosophila melanogaster: rpL22-like is differentially expressed and alternatively spliced","volume":"39","author":"Kearse","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2024.114228_bib19","doi-asserted-by":"crossref","first-page":"545","DOI":"10.1016\/j.celrep.2016.12.034","article-title":"Ribosomal Proteins Rpl22 and Rpl22l1 Control Morphogenesis by Regulating Pre-mRNA Splicing","volume":"18","author":"Zhang","year":"2017","journal-title":"Cell Rep."},{"key":"10.1016\/j.celrep.2024.114228_bib20","doi-asserted-by":"crossref","first-page":"e1003708","DOI":"10.1371\/journal.pgen.1003708","article-title":"The ribosomal protein Rpl22 controls ribosome composition by directly repressing expression of its own paralog, Rpl22l1","volume":"9","author":"O'Leary","year":"2013","journal-title":"PLoS Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib21","doi-asserted-by":"crossref","first-page":"e1005999","DOI":"10.1371\/journal.pgen.1005999","article-title":"Splicing-Mediated Autoregulation Modulates Rpl22p Expression in Saccharomyces cerevisiae","volume":"12","author":"Gabunilas","year":"2016","journal-title":"PLoS Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib22","doi-asserted-by":"crossref","first-page":"2550","DOI":"10.1101\/gad.202184.112","article-title":"Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis","volume":"26","author":"Gardner","year":"2012","journal-title":"Genes Dev."},{"key":"10.1016\/j.celrep.2024.114228_bib23","doi-asserted-by":"crossref","first-page":"1469","DOI":"10.1534\/genetics.115.185363","article-title":"Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae","volume":"203","author":"Hooks","year":"2016","journal-title":"Genetics"},{"key":"10.1016\/j.celrep.2024.114228_bib24","doi-asserted-by":"crossref","first-page":"1480","DOI":"10.1111\/nph.15231","article-title":"A noncoding RNA transcribed from the AGAMOUS (AG) second intron binds to CURLY LEAF and represses AG expression in leaves","volume":"219","author":"Wu","year":"2018","journal-title":"New Phytol."},{"key":"10.1016\/j.celrep.2024.114228_bib25","doi-asserted-by":"crossref","first-page":"5611","DOI":"10.1038\/s41467-020-19381-w","article-title":"A circular RNA generated from an intron of the insulin gene controls insulin secretion","volume":"11","author":"Stoll","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2024.114228_bib26","doi-asserted-by":"crossref","first-page":"E7970","DOI":"10.1073\/pnas.1808816115","article-title":"Lariat intronic RNAs in the cytoplasm of vertebrate cells","volume":"115","author":"Talhouarne","year":"2018","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.celrep.2024.114228_bib27","doi-asserted-by":"crossref","first-page":"258","DOI":"10.1016\/j.tibs.2018.09.016","article-title":"Stable Intronic Sequence RNAs (sisRNAs): An Expanding Universe","volume":"44","author":"Chan","year":"2019","journal-title":"Trends Biochem. Sci."},{"key":"10.1016\/j.celrep.2024.114228_bib28","doi-asserted-by":"crossref","first-page":"759","DOI":"10.1038\/s41467-017-00684-4","article-title":"DIP1 modulates stem cell homeostasis in Drosophila through regulation of sisR-1","volume":"8","author":"Wong","year":"2017","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2024.114228_bib29","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1083\/jcb.201507065","article-title":"Stable intronic sequence RNAs have possible regulatory roles in Drosophila melanogaster","volume":"211","author":"Pek","year":"2015","journal-title":"J.\u00a0Cell Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib30","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1016\/j.stemcr.2018.06.002","article-title":"A sisRNA\/miRNA Axis Prevents Loss of Germline Stem Cells during Starvation in Drosophila","volume":"11","author":"Osman","year":"2018","journal-title":"Stem Cell Rep."},{"key":"10.1016\/j.celrep.2024.114228_bib31","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1016\/j.tig.2018.01.006","article-title":"Stable Intronic Sequence RNAs Engage in Feedback Loops","volume":"34","author":"Pek","year":"2018","journal-title":"Trends Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib32","doi-asserted-by":"crossref","first-page":"1062","DOI":"10.1016\/j.cub.2017.02.040","article-title":"Maternally Inherited Stable Intronic Sequence RNA Triggers a Self-Reinforcing Feedback Loop during Development","volume":"27","author":"Tay","year":"2017","journal-title":"Curr. Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib33","doi-asserted-by":"crossref","first-page":"906","DOI":"10.1016\/j.cell.2018.03.064","article-title":"Self-Recognition of an Inducible Host lncRNA by RIG-I Feedback Restricts Innate Immune Response","volume":"173","author":"Jiang","year":"2018","journal-title":"Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib34","doi-asserted-by":"crossref","first-page":"e1006422","DOI":"10.1371\/journal.pgen.1006422","article-title":"Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis","volume":"12","author":"Li","year":"2016","journal-title":"PLoS Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib35","doi-asserted-by":"crossref","first-page":"e54350","DOI":"10.15252\/embr.202154350","article-title":"Distinct biogenesis pathways may have led to functional divergence of the human and Drosophila Arglu1 sisRNA","volume":"24","author":"Chan","year":"2023","journal-title":"EMBO Rep."},{"key":"10.1016\/j.celrep.2024.114228_bib36","first-page":"1208","article-title":"Maternally inherited intron coordinates primordial germ cell homeostasis during Drosophila embryogenesis","volume":"28","author":"Osman","year":"2021","journal-title":"Cell\u00a0Death Differ."},{"key":"10.1016\/j.celrep.2024.114228_bib37","doi-asserted-by":"crossref","first-page":"1252","DOI":"10.1038\/s41467-024-45651-y","article-title":"Nutrient-dependent regulation of a stable intron modulates germline mitochondrial quality control","volume":"15","author":"Ng","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2024.114228_bib38","doi-asserted-by":"crossref","first-page":"792","DOI":"10.1016\/j.molcel.2013.08.017","article-title":"Circular intronic long noncoding RNAs","volume":"51","author":"Zhang","year":"2013","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib39","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1038\/nsmb.2959","article-title":"Exon-intron circular RNAs regulate transcription in the nucleus","volume":"22","author":"Li","year":"2015","journal-title":"Nat. Struct. Mol. Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib40","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1080\/19336934.2018.1549419","article-title":"Functional interplay between ribosomal protein paralogues in the eRpL22 family in Drosophila melanogaster","volume":"12","author":"Mageeney","year":"2018","journal-title":"Fly (Austin)"},{"key":"10.1016\/j.celrep.2024.114228_bib41","doi-asserted-by":"crossref","first-page":"2240","DOI":"10.1091\/mbc.E19-02-0086","article-title":"Specialized eRpL22 paralogue-specific ribosomes regulate specific mRNA translation in spermatogenesis in Drosophila melanogaster","volume":"30","author":"Mageeney","year":"2019","journal-title":"Mol. Biol. Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib42","doi-asserted-by":"crossref","first-page":"1179","DOI":"10.3389\/fgene.2019.01179","article-title":"Nucleolar Sequestration: Remodeling Nucleoli Into Amyloid Bodies","volume":"10","author":"Wang","year":"2019","journal-title":"Front. Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib43","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1016\/j.tcb.2019.04.003","article-title":"Nucleolus: A Central Hub for Nuclear Functions","volume":"29","author":"Iarovaia","year":"2019","journal-title":"Trends Cell Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib44","doi-asserted-by":"crossref","first-page":"e0190685","DOI":"10.1371\/journal.pone.0190685","article-title":"Introns provide a platform for intergenic regulatory feedback of RPL22 paralogs in yeast","volume":"13","author":"Abrhamova","year":"2018","journal-title":"PLoS One"},{"key":"10.1016\/j.celrep.2024.114228_bib45","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1016\/j.devcel.2013.01.018","article-title":"Control of hematopoietic stem cell emergence by antagonistic functions of ribosomal protein paralogs","volume":"24","author":"Zhang","year":"2013","journal-title":"Dev. Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib46","doi-asserted-by":"crossref","first-page":"1959","DOI":"10.1101\/gad.390106","article-title":"Drosophila ribosomal proteins are associated with linker histone H1 and suppress gene transcription","volume":"20","author":"Ni","year":"2006","journal-title":"Genes Dev."},{"key":"10.1016\/j.celrep.2024.114228_bib47","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41556-022-01066-9","article-title":"A guide to naming eukaryotic circular RNAs","volume":"25","author":"Chen","year":"2023","journal-title":"Nat. Cell Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib48","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1186\/s12859-021-04471-3","article-title":"Spliceator: multi-species splice site prediction using convolutional neural networks","volume":"22","author":"Scalzitti","year":"2021","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.celrep.2024.114228_bib49","doi-asserted-by":"crossref","first-page":"1895","DOI":"10.1111\/j.1432-1033.2004.04099.x","article-title":"Ribosomal protein L22 inhibits regulation of cellular activities by the Epstein-Barr virus small RNA EBER-1","volume":"271","author":"Elia","year":"2004","journal-title":"Eur. J. Biochem."},{"key":"10.1016\/j.celrep.2024.114228_bib50","doi-asserted-by":"crossref","first-page":"872","DOI":"10.1261\/rna.2339606","article-title":"Multiple domains of EBER 1, an Epstein-Barr virus noncoding RNA, recruit human ribosomal protein L22","volume":"12","author":"Fok","year":"2006","journal-title":"RNA"},{"key":"10.1016\/j.celrep.2024.114228_bib51","doi-asserted-by":"crossref","first-page":"8027","DOI":"10.1128\/jvi.69.12.8027-8034.1995","article-title":"In\u00a0vitro selection of RNA ligands for the ribosomal L22 protein associated with Epstein-Barr virus-expressed RNA by using randomized and cDNA-derived RNA libraries","volume":"69","author":"Dobbelstein","year":"1995","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.celrep.2024.114228_bib52","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1007\/978-1-4939-2291-8_19","article-title":"The ViennaRNA web services","volume":"1269","author":"Gruber","year":"2015","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib53","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1242\/dev.086397","article-title":"MicroRNAs downregulate Bag of marbles to ensure proper terminal differentiation in the Drosophila male germline","volume":"140","author":"Eun","year":"2013","journal-title":"Development"},{"key":"10.1016\/j.celrep.2024.114228_bib54","doi-asserted-by":"crossref","first-page":"3394","DOI":"10.1242\/dev.122341","article-title":"Cell type-specific translational repression of Cyclin B during meiosis in males","volume":"142","author":"Baker","year":"2015","journal-title":"Development"},{"key":"10.1016\/j.celrep.2024.114228_bib55","doi-asserted-by":"crossref","first-page":"241","DOI":"10.4161\/nucl.25261","article-title":"RpL22e, but not RpL22e-like-PA, is SUMOylated and localizes to the nucleoplasm of Drosophila meiotic spermatocytes","volume":"4","author":"Kearse","year":"2013","journal-title":"Nucleus"},{"key":"10.1016\/j.celrep.2024.114228_bib56","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/978-3-319-50044-7_7","article-title":"SUMO and Nucleocytoplasmic Transport","volume":"963","author":"Ptak","year":"2017","journal-title":"Adv. Exp. Med. Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib57","doi-asserted-by":"crossref","first-page":"4045","DOI":"10.1007\/s00018-011-0792-5","article-title":"Emerging roles of the SUMO pathway in development","volume":"68","author":"Lomeli","year":"2011","journal-title":"Cell. Mol. Life Sci."},{"key":"10.1016\/j.celrep.2024.114228_bib58","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1530\/REP-15-0239","article-title":"Identification of cell-specific targets of sumoylation during mouse spermatogenesis","volume":"151","author":"Xiao","year":"2016","journal-title":"Reproduction"},{"key":"10.1016\/j.celrep.2024.114228_bib59","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1371\/journal.pone.0005306","article-title":"Clusters of basic amino acids contribute to RNA binding and nucleolar localization of ribosomal protein L22","volume":"4","author":"Houmani","year":"2009","journal-title":"PLoS One"},{"key":"10.1016\/j.celrep.2024.114228_bib60","doi-asserted-by":"crossref","first-page":"e0122519","DOI":"10.1371\/journal.pone.0122519","article-title":"Loss-of-function analysis reveals distinct requirements of the translation initiation factors eIF4E, eIF4E-3, eIF4G and eIF4G2 in Drosophila spermatogenesis","volume":"10","author":"Ghosh","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.celrep.2024.114228_bib61","doi-asserted-by":"crossref","first-page":"e0151231","DOI":"10.1371\/journal.pone.0151231","article-title":"Confocal Analysis of Nuclear Lamina Behavior during Male Meiosis and Spermatogenesis in Drosophila melanogaster","volume":"11","author":"Fabbretti","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.celrep.2024.114228_bib62","doi-asserted-by":"crossref","first-page":"870","DOI":"10.1016\/j.molcel.2015.03.027","article-title":"Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed","volume":"58","author":"Rybak-Wolf","year":"2015","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib63","doi-asserted-by":"crossref","first-page":"9844","DOI":"10.1128\/JVI.01014-09","article-title":"Growth-promoting properties of Epstein-Barr virus EBER-1 RNA correlate with ribosomal protein L22 binding","volume":"83","author":"Houmani","year":"2009","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.celrep.2024.114228_bib64","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1038\/d41586-019-00823-5","article-title":"Genetic paradox explained by nonsense","volume":"568","author":"Wilkinson","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2024.114228_bib65","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1038\/s41586-019-1064-z","article-title":"Genetic compensation triggered by mutant mRNA degradation","volume":"568","author":"El-Brolosy","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2024.114228_bib66","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1038\/s41586-019-1057-y","article-title":"PTC-bearing mRNA elicits a genetic compensation response via Upf3a and COMPASS components","volume":"568","author":"Ma","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2024.114228_bib67","doi-asserted-by":"crossref","first-page":"29979","DOI":"10.1073\/pnas.2004075117","article-title":"Rerouting of ribosomal proteins into splicing in plant organelles","volume":"117","author":"Wang","year":"2020","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.celrep.2024.114228_bib68","doi-asserted-by":"crossref","first-page":"1798","DOI":"10.1038\/onc.2010.569","article-title":"Ribosomal protein S27-like and S27 interplay with p53-MDM2 axis as a target, a substrate and a regulator","volume":"30","author":"Xiong","year":"2011","journal-title":"Oncogene"},{"key":"10.1016\/j.celrep.2024.114228_bib69","doi-asserted-by":"crossref","first-page":"759","DOI":"10.1080\/15384101.2019.1593708","article-title":"Ribosomal protein RPL22\/eL22 regulates the cell cycle by acting as an inhibitor of the CDK4-cyclin D complex","volume":"18","author":"Del Toro","year":"2019","journal-title":"Cell Cycle"},{"key":"10.1016\/j.celrep.2024.114228_bib70","doi-asserted-by":"crossref","DOI":"10.3390\/cells9071745","article-title":"Ribosomal Protein uL11 as a Regulator of Metabolic Circuits Related to Aging and Cell Cycle","volume":"9","author":"Molon","year":"2020","journal-title":"Cells"},{"key":"10.1016\/j.celrep.2024.114228_bib71","doi-asserted-by":"crossref","first-page":"e1003006","DOI":"10.1371\/journal.pgen.1003006","article-title":"New partners in regulation of gene expression: the enhancer of Trithorax and Polycomb Corto interacts with methylated ribosomal protein l12 via its chromodomain","volume":"8","author":"Coleno-Costes","year":"2012","journal-title":"PLoS Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib72","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1016\/S1097-2765(02)00565-8","article-title":"Ribosome Components are Associated with Sites of Transcription","volume":"10","author":"Brogna","year":"2002","journal-title":"Mol. Cell"},{"key":"10.1016\/j.celrep.2024.114228_bib73","doi-asserted-by":"crossref","first-page":"304","DOI":"10.1101\/gad.9.3.304","article-title":"Regulation of human RPS14 transcription by intronic antisense RNAs and ribosomal protein S14","volume":"9","author":"Tasheva","year":"1995","journal-title":"Genes Dev."},{"key":"10.1016\/j.celrep.2024.114228_bib74","doi-asserted-by":"crossref","first-page":"3178","DOI":"10.1016\/j.celrep.2017.11.060","article-title":"The Germline Linker Histone dBigH1 and the Translational Regulator Bam Form a Repressor Loop Essential for Male Germ Stem Cell Differentiation","volume":"21","author":"Carbonell","year":"2017","journal-title":"Cell Rep."},{"key":"10.1016\/j.celrep.2024.114228_bib75","doi-asserted-by":"crossref","first-page":"194815","DOI":"10.1016\/j.bbagrm.2022.194815","article-title":"From the comparative study of a circRNA originating from an mammalian ATXN2L intron to understanding the genesis of intron lariat-derived circRNAs","volume":"1865","author":"Robic","year":"2022","journal-title":"Biochim. Biophys. Acta. Gene Regul. Mech."},{"key":"10.1016\/j.celrep.2024.114228_bib76","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1186\/1471-2164-14-543","article-title":"Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA","volume":"14","author":"Moss","year":"2013","journal-title":"BMC Genom."},{"key":"10.1016\/j.celrep.2024.114228_bib77","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1186\/s13104-018-3250-8","article-title":"Human regulatory proteins associate with non-coding RNAs from the EBV IR1 region","volume":"11","author":"Tompkins","year":"2018","journal-title":"BMC Res. Notes"},{"key":"10.1016\/j.celrep.2024.114228_bib78","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1186\/s12864-020-6687-9","article-title":"Stable intronic sequence RNAs (sisRNAs) are selected regions in introns with distinct properties","volume":"21","author":"Jin","year":"2020","journal-title":"BMC Genom."},{"key":"10.1016\/j.celrep.2024.114228_bib79","doi-asserted-by":"crossref","first-page":"634","DOI":"10.3389\/fgene.2019.00634","article-title":"Stable Intronic Sequences and Exon Skipping Events in the Human RPE65 Gene: Analysis of Expression in Retinal Pigment Epithelium Cells and Cell Culture Models","volume":"10","author":"Postnikova","year":"2019","journal-title":"Front. Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib80","doi-asserted-by":"crossref","first-page":"724","DOI":"10.1016\/j.cub.2010.02.046","article-title":"Repression of retroelements in Drosophila germline via piRNA pathway by the Tudor domain protein Tejas","volume":"20","author":"Patil","year":"2010","journal-title":"Curr. Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib81","doi-asserted-by":"crossref","first-page":"441","DOI":"10.1007\/s12195-013-0295-6","article-title":"Lineage tracing quantification reveals symmetric stem cell division in Drosophila male germline stem cells","volume":"6","author":"Salzmann","year":"2013","journal-title":"Cell. Mol. Bioeng."},{"key":"10.1016\/j.celrep.2024.114228_bib82","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1093\/bioinformatics\/btp120","article-title":"TopHat: discovering splice junctions with RNA-Seq","volume":"25","author":"Trapnell","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2024.114228_bib83","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","author":"Langmead","year":"2009","journal-title":"Genome Biol."},{"key":"10.1016\/j.celrep.2024.114228_bib84","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1242\/dev.02766","article-title":"The Ovhts polyprotein is cleaved to produce fusome and ring canal proteins required for Drosophila oogenesis","volume":"134","author":"Petrella","year":"2007","journal-title":"Development"},{"key":"10.1016\/j.celrep.2024.114228_bib85","doi-asserted-by":"crossref","first-page":"405","DOI":"10.1038\/nmeth.1592","article-title":"A genome-scale shRNA resource for transgenic RNAi in Drosophila","volume":"8","author":"Ni","year":"2011","journal-title":"Nat. Methods"},{"key":"10.1016\/j.celrep.2024.114228_bib86","doi-asserted-by":"crossref","first-page":"e1008498","DOI":"10.1371\/journal.pgen.1008498","article-title":"SON protects nascent transcripts from unproductive degradation by counteracting DIP1","volume":"15","author":"Tay","year":"2019","journal-title":"PLoS Genet."},{"key":"10.1016\/j.celrep.2024.114228_bib87","doi-asserted-by":"crossref","first-page":"138","DOI":"10.1016\/j.ymeth.2021.04.002","article-title":"Circular sisRNA identification and characterisation","volume":"196","author":"Ng","year":"2021","journal-title":"Methods"}],"container-title":["Cell Reports"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124724005564?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124724005564?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,8,5]],"date-time":"2025-08-05T04:29:01Z","timestamp":1754368141000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2211124724005564"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,5]]},"references-count":87,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2024,5]]}},"alternative-id":["S2211124724005564"],"URL":"https:\/\/doi.org\/10.1016\/j.celrep.2024.114228","relation":{},"ISSN":["2211-1247"],"issn-type":[{"value":"2211-1247","type":"print"}],"subject":[],"published":{"date-parts":[[2024,5]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genetic compensation between ribosomal protein paralogs mediated by a cognate circular RNA","name":"articletitle","label":"Article Title"},{"value":"Cell Reports","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.celrep.2024.114228","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Author(s). Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"114228"}}