{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,25]],"date-time":"2026-10-25T08:36:45Z","timestamp":1792917405745,"version":"4.5.0"},"reference-count":115,"publisher":"Elsevier BV","issue":"11","license":[{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,10,2]],"date-time":"2026-10-02T00:00:00Z","timestamp":1790899200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100008804","name":"Government of the People's Republic of Bangladesh Ministry of Science and Technology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100008804","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Cell Reports"],"published-print":{"date-parts":[[2026,11]]},"DOI":"10.1016\/j.celrep.2026.118177","type":"journal-article","created":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T21:04:07Z","timestamp":1792530247000},"page":"118177","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["A MADS51 allele is associated with flowering-time divergence and contributes to ecological adaptation during wild rice speciation"],"prefix":"10.1016","volume":"45","author":[{"given":"Hong-Xiang","family":"Zhang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jing-Dan","family":"Han","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yu-Qing","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cheng-Gen","family":"Qiang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lei","family":"Yu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zi-Hui","family":"Jiao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wen-Hao","family":"Yu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chun-Yan","family":"Jing","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lian","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ning-Ning","family":"Ren","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiao-Ming","family":"Zheng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fu-Min","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Song","family":"Ge","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.celrep.2026.118177_bib1","series-title":"Ecological Speciation","author":"Nosil","year":"2012"},{"key":"10.1016\/j.celrep.2026.118177_bib2","doi-asserted-by":"crossref","first-page":"176","DOI":"10.1038\/nrg3644","article-title":"Genomics and the origin of species","volume":"15","author":"Seehausen","year":"2014","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib3","doi-asserted-by":"crossref","first-page":"764","DOI":"10.1111\/evo.14181","article-title":"Comparative studies on speciation: 30 years since Coyne and Orr","volume":"75","author":"Matute","year":"2021","journal-title":"Evolution"},{"key":"10.1016\/j.celrep.2026.118177_bib4","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2122153119","article-title":"Three problems in the genetics of speciation by selection","volume":"119","author":"Schluter","year":"2022","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.celrep.2026.118177_bib5","doi-asserted-by":"crossref","DOI":"10.1016\/j.xplc.2023.100599","article-title":"Genomics of plant speciation","volume":"4","author":"Bock","year":"2023","journal-title":"Plant Commun."},{"key":"10.1016\/j.celrep.2026.118177_bib6","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1146\/annurev-arplant-071221-090809","article-title":"Replicated evolution in plants","volume":"74","author":"James","year":"2023","journal-title":"Annu. Rev. Plant Biol."},{"key":"10.1016\/j.celrep.2026.118177_bib7","doi-asserted-by":"crossref","first-page":"2228","DOI":"10.1111\/evo.14565","article-title":"The strength of reproductive isolating barriers in seed plants: Insights from studies quantifying premating and postmating reproductive barriers over the past 15 years","volume":"76","author":"Christie","year":"2022","journal-title":"Evolution"},{"key":"10.1016\/j.celrep.2026.118177_bib8","doi-asserted-by":"crossref","first-page":"439","DOI":"10.1093\/aob\/mcq126","article-title":"Speciation genes in plants","volume":"106","author":"Rieseberg","year":"2010","journal-title":"Ann. Bot."},{"key":"10.1016\/j.celrep.2026.118177_bib9","doi-asserted-by":"crossref","DOI":"10.1101\/cshperspect.a041439","article-title":"Genetics and the evolution of prezygotic isolation","volume":"16","author":"Merrill","year":"2024","journal-title":"Cold Spring Harbor Perspect. Biol."},{"key":"10.1016\/j.celrep.2026.118177_bib10","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1111\/evo.12589","article-title":"Strong premating reproductive isolation drives incipient speciation in Mimulus aurantiacus","volume":"69","author":"Sobel","year":"2015","journal-title":"Evolution"},{"key":"10.1016\/j.celrep.2026.118177_bib11","doi-asserted-by":"crossref","first-page":"2438","DOI":"10.1111\/evo.14056","article-title":"The effectiveness of pseudomagic traits in promoting divergence and enhancing local adaptation","volume":"74","author":"Servedio","year":"2020","journal-title":"Evolution"},{"key":"10.1016\/j.celrep.2026.118177_bib12","series-title":"Fitness Landscapes and the Origin of Species","author":"Gavrilets","year":"2004"},{"key":"10.1016\/j.celrep.2026.118177_bib13","doi-asserted-by":"crossref","first-page":"2910","DOI":"10.1111\/j.1365-294X.2007.03304.x","article-title":"Case studies and mathematical models of ecological speciation. 2. Palms on an oceanic island","volume":"16","author":"Gavrilets","year":"2007","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib14","doi-asserted-by":"crossref","first-page":"1883","DOI":"10.1111\/nph.16205","article-title":"Evolutionary processes from the perspective of flowering time diversity","volume":"225","author":"Gaudinier","year":"2020","journal-title":"New Phytol."},{"key":"10.1016\/j.celrep.2026.118177_bib15","doi-asserted-by":"crossref","first-page":"389","DOI":"10.1016\/j.tree.2011.04.005","article-title":"Magic traits in speciation: \u2018magic\u2019 but not rare?","volume":"26","author":"Servedio","year":"2011","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib16","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1111\/mec.13763","article-title":"The genetic architecture of local adaptation and reproductive isolation in sympatry within the Mimulus guttatus species complex","volume":"26","author":"Ferris","year":"2017","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib17","doi-asserted-by":"crossref","first-page":"1957","DOI":"10.1002\/ajb2.1193","article-title":"The magic of flowers or: speciation genes and where to find them","volume":"105","author":"Schl\u00fcter","year":"2018","journal-title":"Am. J. Bot."},{"key":"10.1016\/j.celrep.2026.118177_bib18","doi-asserted-by":"crossref","first-page":"875","DOI":"10.1093\/molbev\/msz029","article-title":"Parallel speciation of wild rice associated with habitat shifts","volume":"36","author":"Cai","year":"2019","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib19","doi-asserted-by":"crossref","DOI":"10.1098\/rstb.2019.0542","article-title":"Sympatric speciation in mountain roses (Metrosideros) on an oceanic island","volume":"375","author":"Osborne","year":"2020","journal-title":"Philos. Trans. R. Soc. Lond. B Biol. Sci."},{"key":"10.1016\/j.celrep.2026.118177_bib20","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1111\/2041-210X.12324","article-title":"Towards the identification of the loci of adaptive evolution","volume":"6","author":"Pardo-Diaz","year":"2015","journal-title":"Methods Ecol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib21","doi-asserted-by":"crossref","first-page":"968","DOI":"10.1016\/j.tree.2020.08.001","article-title":"Functional genomics offers new tests of speciation hypotheses","volume":"35","author":"Hopkins","year":"2020","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib22","doi-asserted-by":"crossref","DOI":"10.1098\/rstb.2020.0503","article-title":"Genetic basis of speciation and adaptation: from loci to causative mutations","volume":"377","author":"Kitano","year":"2022","journal-title":"Philos. Trans. R. Soc. Lond. B Biol. Sci."},{"key":"10.1016\/j.celrep.2026.118177_bib23","doi-asserted-by":"crossref","first-page":"1221","DOI":"10.1038\/s41477-023-01476-z","article-title":"Multiple domestications of Asian rice","volume":"9","author":"Jing","year":"2023","journal-title":"Nat. Plants"},{"key":"10.1016\/j.celrep.2026.118177_bib24","doi-asserted-by":"crossref","first-page":"533","DOI":"10.1016\/j.gde.2007.09.005","article-title":"Genetics and phylogenetics of rice domestication","volume":"17","author":"Sang","year":"2007","journal-title":"Curr. Opin. Genet. Dev."},{"key":"10.1016\/j.celrep.2026.118177_bib25","doi-asserted-by":"crossref","first-page":"5211","DOI":"10.1111\/mec.13375","article-title":"Population genetic structure of Oryza rufipogon and Oryza nivara: implications for the origin of O. nivara","volume":"24","author":"Liu","year":"2015","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib26","doi-asserted-by":"crossref","DOI":"10.1111\/mec.17268","article-title":"Genetic architecture of ecological divergence between Oryza rufipogon and Oryza nivara","volume":"33","author":"Meng","year":"2024","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib27","doi-asserted-by":"crossref","first-page":"896","DOI":"10.1086\/670370","article-title":"Ecogeographic variation in the morphology of two Asian wild rice species, Oryza nivara and Oryza rufipogon","volume":"174","author":"Banaticla-Hilario","year":"2013","journal-title":"Int. J. Plant Sci."},{"key":"10.1016\/j.celrep.2026.118177_bib28","doi-asserted-by":"crossref","first-page":"3120","DOI":"10.1111\/nph.70861","article-title":"Genetic architecture of flowering time and perenniality: implications for the origin of wild rice Oryza nivara","volume":"249","author":"Qiang","year":"2026","journal-title":"New Phytol."},{"key":"10.1016\/j.celrep.2026.118177_bib29","doi-asserted-by":"crossref","first-page":"1714","DOI":"10.1007\/s11427-019-1678-6","article-title":"Divergence in flowering time is a major component contributing to reproductive isolation between two wild rice species (Oryza rufipogon and O. nivara)","volume":"63","author":"Xu","year":"2020","journal-title":"Sci. China Life Sci."},{"key":"10.1016\/j.celrep.2026.118177_bib30","series-title":"Oxford Surveys in Evolutionary Biology","first-page":"135","article-title":"Evolutionary studies in cultivated rice and its wild relatives","author":"Morishima","year":"1992"},{"key":"10.1016\/j.celrep.2026.118177_bib31","doi-asserted-by":"crossref","first-page":"870","DOI":"10.1111\/j.1558-5646.2008.00602.x","article-title":"Genetic architecture for the adaptive origin of annual wild rice, Oryza nivara","volume":"63","author":"Grillo","year":"2009","journal-title":"Evolution"},{"key":"10.1016\/j.celrep.2026.118177_bib35","first-page":"675","article-title":"Responses to seed dormancy-breaking treatments in rice species (Oryza L.)","volume":"26","author":"Naredo","year":"1998","journal-title":"Seed Sci. Technol."},{"key":"10.1016\/j.celrep.2026.118177_bib32","doi-asserted-by":"crossref","first-page":"824","DOI":"10.1038\/nprot.2008.46","article-title":"Agrobacterium-mediated transformation of rice using immature embryos or calli induced from mature seed","volume":"3","author":"Hiei","year":"2008","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.celrep.2026.118177_bib36","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1002\/cppb.20004","article-title":"Generation of stable transgenic rice (Oryza sativa L.) by Agrobacterium-mediated transformation","volume":"1","author":"Zhang","year":"2016","journal-title":"Curr. Protoc. Plant Biol."},{"key":"10.1016\/j.celrep.2026.118177_bib33","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1007\/s12374-018-0081-z","article-title":"Roles of sugars in controlling flowering time","volume":"61","author":"Cho","year":"2018","journal-title":"J. Plant Biol."},{"key":"10.1016\/j.celrep.2026.118177_bib37","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1093\/plphys\/kiae109","article-title":"Flowering time: From physiology, through genetics to mechanism","volume":"195","author":"Maple","year":"2024","journal-title":"Plant Physiol."},{"key":"10.1016\/j.celrep.2026.118177_bib38","doi-asserted-by":"crossref","first-page":"D1548","DOI":"10.1093\/nar\/gkad1028","article-title":"Planteome 2024 update: Reference ontologies and knowledgebase for plant biology","volume":"52","author":"Cooper","year":"2024","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2026.118177_bib34","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1186\/s12284-022-00569-1","article-title":"New data and new features of the funricegenes (functionally characterized rice genes) database: 2021 update","volume":"15","author":"Huang","year":"2022","journal-title":"Rice"},{"key":"10.1016\/j.celrep.2026.118177_bib39","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1105\/tpc.106.049221","article-title":"The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy","volume":"19","author":"Liu","year":"2007","journal-title":"Plant Cell"},{"key":"10.1016\/j.celrep.2026.118177_bib40","doi-asserted-by":"crossref","first-page":"1389","DOI":"10.1104\/pp.114.256578","article-title":"Histone H2B monoubiquitination mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 is involved in anther development by regulating tapetum degradation-related genes in rice","volume":"168","author":"Cao","year":"2015","journal-title":"Plant Physiol."},{"key":"10.1016\/j.celrep.2026.118177_bib41","doi-asserted-by":"crossref","first-page":"1484","DOI":"10.1104\/pp.107.103291","article-title":"OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a","volume":"145","author":"Kim","year":"2007","journal-title":"Plant Physiol."},{"key":"10.1016\/j.celrep.2026.118177_bib42","doi-asserted-by":"crossref","first-page":"596","DOI":"10.1111\/tpj.14946","article-title":"Whole-genome de novo assemblies reveal extensive structural variations and dynamic organelle-to-nucleus DNA transfers in African and Asian rice","volume":"104","author":"Ma","year":"2020","journal-title":"Plant J."},{"key":"10.1016\/j.celrep.2026.118177_bib43","doi-asserted-by":"crossref","first-page":"282","DOI":"10.1007\/s11427-020-1738-x","article-title":"A chromosome-level genome assembly of the wild rice Oryza rufipogon facilitates tracing the origins of Asian cultivated rice","volume":"64","author":"Xie","year":"2021","journal-title":"Sci. China Life Sci."},{"key":"10.1016\/j.celrep.2026.118177_bib44","first-page":"D1104","article-title":"PlantRegMap: charting functional regulatory maps in plants","volume":"48","author":"Tian","year":"2020","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2026.118177_bib45","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1093\/molbev\/msv196","article-title":"Widespread and adaptive alterations in genome-wide gene expression associated with ecological divergence of two Oryza species","volume":"33","author":"Guo","year":"2016","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib46","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1038\/s41588-020-00769-9","article-title":"A quantitative genomics map of rice provides genetic insights and guides breeding","volume":"53","author":"Wei","year":"2021","journal-title":"Nat. Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib47","doi-asserted-by":"crossref","first-page":"1560","DOI":"10.1073\/pnas.1112871109","article-title":"Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development","volume":"109","author":"Smaczniak","year":"2012","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.celrep.2026.118177_bib48","article-title":"BRCA1 frameshift variants leading to extended incorrect protein C termini","volume":"4","author":"Nepomuceno","year":"2023","journal-title":"HGG Adv."},{"key":"10.1016\/j.celrep.2026.118177_bib49","doi-asserted-by":"crossref","DOI":"10.1038\/s41431-026-02174-y","article-title":"When truncation is not loss of function: neo-tail architecture as a determinant of pathogenicity in NMD-escaping frameshift variants","author":"Goel","year":"2026","journal-title":"Eur. J. Hum. Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib50","doi-asserted-by":"crossref","first-page":"2196","DOI":"10.1111\/j.1558-5646.2008.00457.x","article-title":"Ecological reproductive isolation of coast and inland races of Mimulus guttatus","volume":"62","author":"Lowry","year":"2008","journal-title":"Evolution"},{"key":"10.1016\/j.celrep.2026.118177_bib51","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1016\/j.molp.2020.11.008","article-title":"Hybrid speciation via inheritance of alternate alleles of parental isolating genes","volume":"14","author":"Wang","year":"2021","journal-title":"Mol. Plant"},{"key":"10.1016\/j.celrep.2026.118177_bib52","doi-asserted-by":"crossref","first-page":"4351","DOI":"10.1111\/mec.16165","article-title":"The genetic basis of floral mechanical isolation between two hummingbird-pollinated Neotropical understorey herbs","volume":"31","author":"Kay","year":"2022","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib53","doi-asserted-by":"crossref","first-page":"176","DOI":"10.1038\/nature02106","article-title":"Allele substitution at a flower colour locus produces a pollinator shift in monkeyflowers","volume":"426","author":"Bradshaw","year":"2003","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2026.118177_bib54","doi-asserted-by":"crossref","first-page":"779","DOI":"10.1105\/tpc.106.048694","article-title":"Single gene\u2013mediated shift in pollinator attraction in Petunia","volume":"19","author":"Hoballah","year":"2007","journal-title":"Plant Cell"},{"key":"10.1016\/j.celrep.2026.118177_bib55","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1534\/genetics.112.146852","article-title":"Genetic dissection of a major anthocyanin QTL contributing to pollinator-mediated reproductive isolation between sister species of Mimulus","volume":"194","author":"Yuan","year":"2013","journal-title":"Genetics"},{"key":"10.1016\/j.celrep.2026.118177_bib56","doi-asserted-by":"crossref","first-page":"1031","DOI":"10.1111\/tpj.12702","article-title":"Floral volatile alleles can contribute to pollinator-mediated reproductive isolation in monkeyflowers (Mimulus)","volume":"80","author":"Byers","year":"2014","journal-title":"Plant J."},{"key":"10.1016\/j.celrep.2026.118177_bib57","doi-asserted-by":"crossref","first-page":"1561","DOI":"10.1111\/evo.12382","article-title":"Pollinator specificity drives strong prepollination reproductive isolation in sympatric sexually deceptive orchids","volume":"68","author":"Whitehead","year":"2014","journal-title":"Evolution"},{"key":"10.1016\/j.celrep.2026.118177_bib58","doi-asserted-by":"crossref","first-page":"3313","DOI":"10.1016\/j.cub.2016.10.026","article-title":"Repeated inactivation of the first committed enzyme underlies the loss of benzaldehyde emission after the selfing transition in Capsella","volume":"26","author":"Sas","year":"2016","journal-title":"Curr. Biol."},{"key":"10.1016\/j.celrep.2026.118177_bib59","doi-asserted-by":"crossref","first-page":"1472","DOI":"10.1111\/jeb.12895","article-title":"Ecological speciation in sympatric palms: 1. Gene expression, selection and pleiotropy","volume":"29","author":"Dunning","year":"2016","journal-title":"J. Evol. Biol."},{"key":"10.1016\/j.celrep.2026.118177_bib60","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1038\/nature04566","article-title":"Sympatric speciation in palms on an oceanic island","volume":"441","author":"Savolainen","year":"2006","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2026.118177_bib61","doi-asserted-by":"crossref","first-page":"1322","DOI":"10.1105\/tpc.18.00124","article-title":"Parallel evolution of common allelic variants confers flowering diversity in Capsella rubella","volume":"30","author":"Yang","year":"2018","journal-title":"Plant Cell"},{"key":"10.1016\/j.celrep.2026.118177_bib62","doi-asserted-by":"crossref","first-page":"3330","DOI":"10.1111\/mec.14126","article-title":"The role of allochrony in speciation","volume":"26","author":"Taylor","year":"2017","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib63","doi-asserted-by":"crossref","first-page":"2255","DOI":"10.1111\/nph.20348","article-title":"The genetic architecture of floral trait divergence between hummingbird- and self-pollinated monkeyflower (Mimulus) species","volume":"245","author":"Chen","year":"2025","journal-title":"New Phytol."},{"key":"10.1016\/j.celrep.2026.118177_bib64","doi-asserted-by":"crossref","first-page":"576","DOI":"10.1126\/science.adf1323","article-title":"Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers","volume":"379","author":"Liang","year":"2023","journal-title":"Science"},{"key":"10.1016\/j.celrep.2026.118177_bib65","doi-asserted-by":"crossref","first-page":"3303","DOI":"10.1016\/j.cub.2016.10.023","article-title":"Gain and loss of floral scent production through changes in structural genes during pollinator-mediated speciation","volume":"26","author":"Amrad","year":"2016","journal-title":"Curr. Biol."},{"key":"10.1016\/j.celrep.2026.118177_bib66","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1270\/jsbbs.18060","article-title":"Switching genetic effects of the flowering time gene Hd1 in LD conditions by Ghd7 and OsPRR37 in rice","volume":"69","author":"Fujino","year":"2019","journal-title":"Breed. Sci."},{"key":"10.1016\/j.celrep.2026.118177_bib67","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1186\/s12284-019-0314-x","article-title":"Genetic interactions among Ghd7, Ghd8, OsPRR37 and Hd1 contribute to large variation in heading date in rice","volume":"12","author":"Zhang","year":"2019","journal-title":"Rice"},{"key":"10.1016\/j.celrep.2026.118177_bib68","doi-asserted-by":"crossref","DOI":"10.1126\/science.adm8762","article-title":"Genomic investigation of 18,421 lines reveals the genetic architecture of rice","volume":"385","author":"Wei","year":"2024","journal-title":"Science"},{"key":"10.1016\/j.celrep.2026.118177_bib69","doi-asserted-by":"crossref","DOI":"10.1093\/molbev\/msac203","article-title":"A pleiotropic flowering time QTL exhibits gene-by-environment interaction for fitness in a perennial grass","volume":"39","author":"Weng","year":"2022","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib70","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1111\/nph.15901","article-title":"Pleiotropy in developmental regulation by flowering-pathway genes: is it an evolutionary constraint?","volume":"224","author":"Auge","year":"2019","journal-title":"New Phytol."},{"key":"10.1016\/j.celrep.2026.118177_bib71","article-title":"Pleiotropy of FRIGIDA enhances the potential for multivariate adaptation","volume":"280","author":"Lovell","year":"2013","journal-title":"Proc. Biol. Sci."},{"key":"10.1016\/j.celrep.2026.118177_bib72","doi-asserted-by":"crossref","first-page":"1031","DOI":"10.1016\/j.cj.2024.05.010","article-title":"A 9.5-kb deletion in the 1st intron of OsMADS51 enhances temperature sensitivity in rice","volume":"12","author":"Zhao","year":"2024","journal-title":"Crop J."},{"key":"10.1016\/j.celrep.2026.118177_bib73","doi-asserted-by":"crossref","first-page":"5080","DOI":"10.1111\/pbi.70285","article-title":"Two transcriptional factors antagonistically fine-tune MIR1863a to balance resistance and yield traits in rice","volume":"23","author":"Hu","year":"2025","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.celrep.2026.118177_bib74","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1016\/j.tree.2007.09.008","article-title":"Adaptation from standing genetic variation","volume":"23","author":"Barrett","year":"2008","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib75","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1016\/j.tig.2020.03.006","article-title":"The genomics of human local adaptation","volume":"36","author":"Rees","year":"2020","journal-title":"Trends Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib76","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2122152119","article-title":"Genetics of adaptation","volume":"119","author":"Bomblies","year":"2022","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.celrep.2026.118177_bib77","doi-asserted-by":"crossref","first-page":"867","DOI":"10.1038\/nrg3322","article-title":"Adaptive evolution: evaluating empirical support for theoretical predictions","volume":"13","author":"Olson-Manning","year":"2012","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib78","doi-asserted-by":"crossref","first-page":"7960","DOI":"10.1038\/ncomms8960","article-title":"Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella","volume":"6","author":"Sicard","year":"2015","journal-title":"Nat. Commun."},{"key":"10.1016\/j.celrep.2026.118177_bib79","doi-asserted-by":"crossref","first-page":"470","DOI":"10.1126\/science.aad8786","article-title":"A beak size locus in Darwin\u2019s finches facilitated character displacement during a drought","volume":"352","author":"Lamichhaney","year":"2016","journal-title":"Science"},{"key":"10.1016\/j.celrep.2026.118177_bib80","doi-asserted-by":"crossref","DOI":"10.1126\/sciadv.abg5285","article-title":"Predicting future from past: The genomic basis of recurrent and rapid stickleback evolution","volume":"7","author":"Roberts Kingman","year":"2021","journal-title":"Sci. Adv."},{"key":"10.1016\/j.celrep.2026.118177_bib81","doi-asserted-by":"crossref","first-page":"531","DOI":"10.1016\/j.tree.2019.02.008","article-title":"A combinatorial view on speciation and adaptive radiation","volume":"34","author":"Marques","year":"2019","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib82","doi-asserted-by":"crossref","first-page":"1095","DOI":"10.1126\/science.1175826","article-title":"On the origin and spread of an adaptive allele in deer mice","volume":"325","author":"Linnen","year":"2009","journal-title":"Science"},{"key":"10.1016\/j.celrep.2026.118177_bib83","doi-asserted-by":"crossref","first-page":"1636","DOI":"10.1104\/pp.014357","article-title":"T-DNA insertional mutagenesis for activation tagging in rice","volume":"130","author":"Jeong","year":"2002","journal-title":"Plant Physiol."},{"key":"10.1016\/j.celrep.2026.118177_bib84","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/gigascience\/gix120","article-title":"SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data","volume":"7","author":"Chen","year":"2018","journal-title":"GigaScience"},{"key":"10.1016\/j.celrep.2026.118177_bib85","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows-Wheeler transform","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2026.118177_bib86","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.1101\/gr.107524.110","article-title":"The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data","volume":"20","author":"McKenna","year":"2010","journal-title":"Genome Res."},{"key":"10.1016\/j.celrep.2026.118177_bib87","doi-asserted-by":"crossref","first-page":"2156","DOI":"10.1093\/bioinformatics\/btr330","article-title":"The variant call format and VCFtools","volume":"27","author":"Danecek","year":"2011","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2026.118177_bib88","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/s13742-015-0047-8","article-title":"Second-generation PLINK: rising to the challenge of larger and richer datasets","volume":"4","author":"Chang","year":"2015","journal-title":"GigaScience"},{"key":"10.1016\/j.celrep.2026.118177_bib89","doi-asserted-by":"crossref","first-page":"526","DOI":"10.1093\/bioinformatics\/bty633","article-title":"ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R","volume":"35","author":"Paradis","year":"2019","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2026.118177_bib90","doi-asserted-by":"crossref","first-page":"1655","DOI":"10.1101\/gr.094052.109","article-title":"Fast model-based estimation of ancestry in unrelated individuals","volume":"19","author":"Alexander","year":"2009","journal-title":"Genome Res."},{"key":"10.1016\/j.celrep.2026.118177_bib91","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1101\/gr.100545.109","article-title":"Population differentiation as a test for selective sweeps","volume":"20","author":"Chen","year":"2010","journal-title":"Genome Res."},{"key":"10.1016\/j.celrep.2026.118177_bib92","doi-asserted-by":"crossref","first-page":"1880","DOI":"10.1016\/j.ajhg.2021.08.005","article-title":"Fast two-stage phasing of large-scale sequence data","volume":"108","author":"Browning","year":"2021","journal-title":"Am. J. Hum. Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib93","doi-asserted-by":"crossref","first-page":"1870","DOI":"10.1093\/molbev\/msw054","article-title":"MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets","volume":"33","author":"Kumar","year":"2016","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib94","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1093\/bioinformatics\/btp187","article-title":"DnaSP v5: a software for comprehensive analysis of DNA polymorphism data","volume":"25","author":"Librado","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.celrep.2026.118177_bib95","doi-asserted-by":"crossref","first-page":"80","DOI":"10.4161\/fly.19695","article-title":"A program for annotating and predicting the effects of single nucleotide polymorphisms","volume":"6","author":"Cingolani","year":"2012","journal-title":"SnpEff. Fly"},{"key":"10.1016\/j.celrep.2026.118177_bib96","doi-asserted-by":"crossref","first-page":"W122","DOI":"10.1093\/nar\/gkx382","article-title":"agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update","volume":"45","author":"Tian","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.celrep.2026.118177_bib97","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1093\/bib\/bbs017","article-title":"Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration","volume":"14","author":"Thorvaldsd\u00f3ttir","year":"2013","journal-title":"Briefings Bioinf."},{"key":"10.1016\/j.celrep.2026.118177_bib98","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1093\/oxfordjournals.molbev.a026036","article-title":"Median-joining networks for inferring intraspecific phylogenies","volume":"16","author":"Bandelt","year":"1999","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.celrep.2026.118177_bib99","doi-asserted-by":"crossref","first-page":"897","DOI":"10.1534\/genetics.118.301120","article-title":"Inferring the probability of the derived vs. the ancestral allelic state at a polymorphic site","volume":"209","author":"Keightley","year":"2018","journal-title":"Genetics"},{"key":"10.1016\/j.celrep.2026.118177_bib100","doi-asserted-by":"crossref","first-page":"78","DOI":"10.1111\/1755-0998.12634","article-title":"REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure","volume":"17","author":"Gautier","year":"2017","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.celrep.2026.118177_bib101","doi-asserted-by":"crossref","first-page":"878","DOI":"10.1038\/s41422-022-00685-z","article-title":"A super pan-genomic landscape of rice","volume":"32","author":"Shang","year":"2022","journal-title":"Cell Res."},{"key":"10.1016\/j.celrep.2026.118177_bib102","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1111\/pbi.13730","article-title":"Genomic signatures of domestication and adaptation during geographical expansions of rice cultivation","volume":"20","author":"Zheng","year":"2022","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.celrep.2026.118177_bib103","first-page":"853","article-title":"Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes","volume":"32","author":"Zhang","year":"2022","journal-title":"Genome Res."},{"key":"10.1016\/j.celrep.2026.118177_bib104","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1186\/1939-8433-6-4","article-title":"Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data","volume":"6","author":"Kawahara","year":"2013","journal-title":"Rice"},{"key":"10.1016\/j.celrep.2026.118177_bib105","doi-asserted-by":"crossref","first-page":"e6","DOI":"10.1093\/pcp\/pcs183","article-title":"Rice Annotation Project Database (RAP-DB): An integrative and interactive database for rice genomics","volume":"54","author":"Sakai","year":"2013","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.celrep.2026.118177_bib106","series-title":"Molecular Evolutionary Genetics","author":"Nei","year":"1987"},{"key":"10.1016\/j.celrep.2026.118177_bib107","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1093\/genetics\/132.2.583","article-title":"Estimation of levels of gene flow from DNA-sequence data","volume":"132","author":"Hudson","year":"1992","journal-title":"Genetics"},{"key":"10.1016\/j.celrep.2026.118177_bib108","doi-asserted-by":"crossref","first-page":"639","DOI":"10.1038\/nrg2611","article-title":"Genetics in geographically structured populations: defining, estimating and interpreting FST","volume":"10","author":"Holsinger","year":"2009","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib109","doi-asserted-by":"crossref","first-page":"3133","DOI":"10.1111\/mec.12796","article-title":"Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow","volume":"23","author":"Cruickshank","year":"2014","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib110","doi-asserted-by":"crossref","first-page":"4488","DOI":"10.1111\/mec.13792","article-title":"Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species","volume":"25","author":"Irwin","year":"2016","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.celrep.2026.118177_bib111","doi-asserted-by":"crossref","first-page":"1004","DOI":"10.1101\/gr.212522.116","article-title":"Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches","volume":"27","author":"Han","year":"2017","journal-title":"Genome Res."},{"key":"10.1016\/j.celrep.2026.118177_bib112","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/1746-4811-2-13","article-title":"A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts","volume":"2","author":"Bart","year":"2006","journal-title":"Plant Methods"},{"key":"10.1016\/j.celrep.2026.118177_bib113","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1146\/annurev.genet.39.073003.112420","article-title":"Molecular signatures of natural selection","volume":"39","author":"Nielsen","year":"2005","journal-title":"Annu. Rev. Genet."},{"key":"10.1016\/j.celrep.2026.118177_bib114","doi-asserted-by":"crossref","first-page":"832","DOI":"10.1038\/nature01140","article-title":"Detecting recent positive selection in the human genome from haplotype structure","volume":"419","author":"Sabeti","year":"2002","journal-title":"Nature"},{"key":"10.1016\/j.celrep.2026.118177_bib115","doi-asserted-by":"crossref","first-page":"1779","DOI":"10.1093\/genetics\/159.4.1779","article-title":"Directional selection and the site-frequency spectrum","volume":"159","author":"Bustamante","year":"2001","journal-title":"Genetics"}],"container-title":["Cell Reports"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124726012568?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2211124726012568?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,25]],"date-time":"2026-10-25T08:10:23Z","timestamp":1792915823000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2211124726012568"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,11]]},"references-count":115,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2026,11]]}},"alternative-id":["S2211124726012568"],"URL":"https:\/\/doi.org\/10.1016\/j.celrep.2026.118177","relation":{},"ISSN":["2211-1247"],"issn-type":[{"value":"2211-1247","type":"print"}],"subject":[],"published":{"date-parts":[[2026,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A MADS51 allele is associated with flowering-time divergence and contributes to ecological adaptation during wild rice speciation","name":"articletitle","label":"Article Title"},{"value":"Cell Reports","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.celrep.2026.118177","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Authors. Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"118177"}}