{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,6]],"date-time":"2026-11-06T19:55:27Z","timestamp":1793994927743,"version":"4.8.0"},"reference-count":63,"publisher":"Elsevier BV","issue":"2","license":[{"start":{"date-parts":[[2018,8,1]],"date-time":"2018-08-01T00:00:00Z","timestamp":1533081600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2018,8,1]],"date-time":"2018-08-01T00:00:00Z","timestamp":1533081600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2019,8,8]],"date-time":"2019-08-08T00:00:00Z","timestamp":1565222400000},"content-version":"vor","delay-in-days":372,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"funder":[{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["R01-DK085025"],"award-info":[{"award-number":["R01-DK085025"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["T32GM007276"],"award-info":[{"award-number":["T32GM007276"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["MCB-1149328"],"award-info":[{"award-number":["MCB-1149328"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000062","name":"National Institute of Diabetes and Digestive and Kidney Diseases","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000062","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["F32AI133917"],"award-info":[{"award-number":["F32AI133917"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Cell Host &amp; Microbe"],"published-print":{"date-parts":[[2018,8]]},"DOI":"10.1016\/j.chom.2018.07.002","type":"journal-article","created":{"date-parts":[[2018,7,26]],"date-time":"2018-07-26T11:42:55Z","timestamp":1532605375000},"page":"296-307.e7","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":499,"title":["A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection"],"prefix":"10.1016","volume":"24","author":[{"given":"Amanda","family":"Jacobson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lilian","family":"Lam","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manohary","family":"Rajendram","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fiona","family":"Tamburini","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jared","family":"Honeycutt","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Trung","family":"Pham","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Will","family":"Van Treuren","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kali","family":"Pruss","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stephen Russell","family":"Stabler","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kyler","family":"Lugo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Donna M.","family":"Bouley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jose G.","family":"Vilches-Moure","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark","family":"Smith","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Justin L.","family":"Sonnenburg","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ami S.","family":"Bhatt","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kerwyn Casey","family":"Huang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Denise","family":"Monack","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.chom.2018.07.002_bib1","doi-asserted-by":"crossref","first-page":"327ra25","DOI":"10.1126\/scitranslmed.aad6663","article-title":"TLR-7 activation enhances IL-22-mediated colonization resistance against vancomycin-resistant enterococcus","volume":"8","author":"Abt","year":"2016","journal-title":"Sci. Transl. Med."},{"key":"10.1016\/j.chom.2018.07.002_bib2","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1016\/j.cell.2011.01.031","article-title":"TLR signaling is required for Salmonella Typhimurium virulence","volume":"144","author":"Arpaia","year":"2011","journal-title":"Cell"},{"key":"10.1016\/j.chom.2018.07.002_bib3","doi-asserted-by":"crossref","first-page":"2839","DOI":"10.1128\/IAI.71.5.2839-2858.2003","article-title":"Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host","volume":"71","author":"Barthel","year":"2003","journal-title":"Infect. Immun."},{"key":"10.1016\/j.chom.2018.07.002_bib4","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1038\/nature18849","article-title":"Interactions between the microbiota and pathogenic bacteria in the gut","volume":"535","author":"B\u00e4umler","year":"2016","journal-title":"Nature"},{"key":"10.1016\/j.chom.2018.07.002_bib5","doi-asserted-by":"crossref","first-page":"1345","DOI":"10.1016\/S1286-4579(01)01496-4","article-title":"Use of mixed infections with Salmonella strains to study virulence genes and their interactions in\u00a0vivo","volume":"3","author":"Beuz\u00f3n","year":"2001","journal-title":"Microbes Infect."},{"key":"10.1016\/j.chom.2018.07.002_bib6","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1038\/nrmicro2546","article-title":"Paneth cells, antimicrobial peptides and maintenance of intestinal homeostasis","volume":"9","author":"Bevins","year":"2011","journal-title":"Nat. Rev. Micro."},{"key":"10.1016\/j.chom.2018.07.002_bib7","first-page":"499","article-title":"Resistance to Salmonella infections in inbred mouse strains","volume":"46","author":"Boehme","year":"1970","journal-title":"Bull. N. Y Acad. Med."},{"key":"10.1016\/j.chom.2018.07.002_bib8","doi-asserted-by":"crossref","first-page":"867","DOI":"10.1177\/0300985813478213","article-title":"Salmonella enterica causes more severe inflammatory disease in C57\/BL6 Nramp1 G169 mice than Sv129S6 mice","volume":"50","author":"Brown","year":"2013","journal-title":"Vet. Pathol."},{"key":"10.1016\/j.chom.2018.07.002_bib9","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/nmicrobiol.2016.215","article-title":"Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium","volume":"2","author":"Brugiroux","year":"2016","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.chom.2018.07.002_bib10","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1038\/nature13828","article-title":"Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile","volume":"517","author":"Buffie","year":"2014","journal-title":"Nature"},{"key":"10.1016\/j.chom.2018.07.002_bib11","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1038\/nmeth.f.303","article-title":"QIIME allows analysis of high-throughput community sequencing data","volume":"7","author":"Caporaso","year":"2010","journal-title":"Nat. Methods"},{"key":"10.1016\/j.chom.2018.07.002_bib12","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1016\/j.chom.2014.11.010","article-title":"Diet dominates host genotype in shaping the murine gut microbiota","volume":"17","author":"Carmody","year":"2015","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.chom.2018.07.002_bib13","doi-asserted-by":"crossref","first-page":"1744","DOI":"10.1136\/gutjnl-2014-307913","article-title":"Effects of targeted delivery of propionate to the human colon on appetite regulation, body weight maintenance and adiposity in overweight adults","volume":"64","author":"Chambers","year":"2015","journal-title":"Gut"},{"key":"10.1016\/j.chom.2018.07.002_bib14","doi-asserted-by":"crossref","first-page":"1024","DOI":"10.1111\/mmi.13439","article-title":"Acidic pH sensing in the bacterial cytoplasm is required for Salmonella virulence","volume":"101","author":"Choi","year":"2016","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.chom.2018.07.002_bib15","doi-asserted-by":"crossref","first-page":"2325","DOI":"10.1194\/jlr.R036012","article-title":"The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism","volume":"54","author":"den Besten","year":"2013","journal-title":"J.\u00a0Lipid Res."},{"key":"10.1016\/j.chom.2018.07.002_bib16","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1016\/j.chom.2013.06.007","article-title":"Probiotic bacteria reduce Salmonella Typhimurium intestinal colonization by competing for iron","volume":"14","author":"Deriu","year":"2013","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.chom.2018.07.002_bib17","doi-asserted-by":"crossref","first-page":"1339","DOI":"10.1016\/j.cell.2016.10.043","article-title":"A dietary fiber-deprived gut microbiota degrades the colonic mucus barrier and enhances pathogen susceptibility","volume":"167","author":"Desai","year":"2016","journal-title":"Cell"},{"key":"10.1016\/j.chom.2018.07.002_bib18","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1007\/s002030050616","article-title":"Energy conservation in the decarboxylation of dicarboxylic acids by fermenting bacteria","volume":"170","author":"Dimroth","year":"1998","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.chom.2018.07.002_bib19","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1016\/j.chom.2016.06.008","article-title":"IFN-\u03b3 hinders recovery from mucosal inflammation during antibiotic therapy for Salmonella gut infection","volume":"20","author":"Dolowschiak","year":"2016","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.chom.2018.07.002_bib20","series-title":"Computer Control of Microscopes Using \u03bcManager","author":"Edelstein","year":"2001"},{"key":"10.1016\/j.chom.2018.07.002_bib21","doi-asserted-by":"crossref","first-page":"2460","DOI":"10.1093\/bioinformatics\/btq461","article-title":"Search and clustering orders of magnitude faster than BLAST","volume":"26","author":"Edgar","year":"2010","journal-title":"Bioinformatics"},{"key":"10.1016\/j.chom.2018.07.002_bib22","doi-asserted-by":"crossref","first-page":"1409","DOI":"10.1128\/jb.179.4.1409-1412.1997","article-title":"Plasmid virulence gene expression induced by short-chain fatty acids in Salmonella dublin: identification of rpoS-dependent and rpoS-independent mechanisms","volume":"179","author":"El-Gedaily","year":"1997","journal-title":"J.\u00a0Bacteriol."},{"key":"10.1016\/j.chom.2018.07.002_bib23","doi-asserted-by":"crossref","first-page":"e8584","DOI":"10.1371\/journal.pone.0008584","article-title":"Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice","volume":"5","author":"Friswell","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.chom.2018.07.002_bib24","doi-asserted-by":"crossref","first-page":"2008","DOI":"10.1128\/IAI.01691-07","article-title":"T cells help to amplify inflammatory responses induced by Salmonella enterica serotype Typhimurium in the intestinal mucosa","volume":"76","author":"Godinez","year":"2008","journal-title":"Infect. Immun."},{"key":"10.1016\/j.chom.2018.07.002_bib25","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1084\/jem.185.4.717","article-title":"Natural resistance to infection with intracellular pathogens: the Nramp1 protein is recruited to the membrane of the phagosome","volume":"185","author":"Gruenheid","year":"1997","journal-title":"J.\u00a0Exp. Med."},{"key":"10.1016\/j.chom.2018.07.002_bib26","doi-asserted-by":"crossref","first-page":"e32403","DOI":"10.1371\/journal.pone.0032403","article-title":"Mouse background strain profoundly influences paneth cell function and intestinal microbial composition","volume":"7","author":"Gulati","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.chom.2018.07.002_bib27","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1111\/j.1574-6968.1996.tb08111.x","article-title":"Identification of a new prp locus required for propionate catabolism in Salmonella typhimurium LT2","volume":"137","author":"Hammelman","year":"1996","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.chom.2018.07.002_bib28","doi-asserted-by":"crossref","first-page":"1675","DOI":"10.4049\/jimmunol.174.3.1675","article-title":"The Salmonella pathogenicity island (SPI)-2 and SPI-1 type III secretion systems allow Salmonella serovar typhimurium to trigger colitis via MyD88-dependent and MyD88-independent mechanisms","volume":"174","author":"Hapfelmeier","year":"2005","journal-title":"J.\u00a0Immunol."},{"key":"10.1016\/j.chom.2018.07.002_bib29","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1016\/j.bcdf.2013.01.004","article-title":"Synthesis and in\u00a0vitro digestion and fermentation of acylated inulin","volume":"1","author":"Hartzell","year":"2013","journal-title":"Bioactive Carbohydrates Dietary Fibre"},{"key":"10.1016\/j.chom.2018.07.002_bib30","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1038\/ni888","article-title":"Angiogenins: a new class of microbicidal proteins involved in innate immunity","volume":"4","author":"Hooper","year":"2003","journal-title":"Nat. Immunol."},{"key":"10.1016\/j.chom.2018.07.002_bib31","first-page":"311","article-title":"Natural resistance to Salmonella typhimurium in different inbred mouse strains","volume":"37","author":"Hormaeche","year":"1979","journal-title":"Immunology"},{"key":"10.1016\/j.chom.2018.07.002_bib32","doi-asserted-by":"crossref","first-page":"4233","DOI":"10.1128\/JB.00205-08","article-title":"Formate acts as a diffusible signal to induce Salmonella invasion","volume":"190","author":"Huang","year":"2008","journal-title":"J.\u00a0Bacteriol."},{"key":"10.1016\/j.chom.2018.07.002_bib33","doi-asserted-by":"crossref","first-page":"1045","DOI":"10.1111\/mmi.12149","article-title":"The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD","volume":"87","author":"Hung","year":"2013","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.chom.2018.07.002_bib34","doi-asserted-by":"crossref","first-page":"343","DOI":"10.4162\/nrp.2015.9.4.343","article-title":"Butyrate modulates bacterial adherence on LS174T human colorectal cells by stimulating mucin secretion and MAPK signaling pathway","volume":"9","author":"Jung","year":"2015","journal-title":"Nutr. Res. Pract."},{"key":"10.1016\/j.chom.2018.07.002_bib35","doi-asserted-by":"crossref","first-page":"343","DOI":"10.1111\/j.1574-6976.2010.00251.x","article-title":"Supervised classification of human microbiota","volume":"35","author":"Knights","year":"2011","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.chom.2018.07.002_bib36","doi-asserted-by":"crossref","first-page":"971","DOI":"10.1016\/j.cmet.2015.10.001","article-title":"Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella","volume":"22","author":"Kovatcheva-Datchary","year":"2015","journal-title":"Cell Metab."},{"key":"10.1016\/j.chom.2018.07.002_bib37","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/j.aca.2006.05.082","article-title":"Antimicrobial peptide-based array for Escherichia coli and Salmonella screening","volume":"575","author":"Kulagina","year":"2006","journal-title":"Anal. Chim. Acta"},{"key":"10.1016\/j.chom.2018.07.002_bib38","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004527","article-title":"Intraspecies competition for niches in the distal gut dictate transmission during persistent Salmonella infection","volume":"10","author":"Lam","year":"2014","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.chom.2018.07.002_bib39","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1128\/IAI.01189-07","article-title":"Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota","volume":"76","author":"Lawley","year":"2007","journal-title":"Infect. Immun."},{"key":"10.1016\/j.chom.2018.07.002_bib40","doi-asserted-by":"crossref","first-page":"e1004557","DOI":"10.1371\/journal.ppat.1004557","article-title":"Granulocytes impose a tight bottleneck upon the gut luminal pathogen population during Salmonella typhimurium colitis","volume":"10","author":"Maier","year":"2014","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.chom.2018.07.002_bib41","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1093\/jac\/dkx374","article-title":"Association between prior antibiotic therapy and subsequent risk of community-acquired infections: a\u00a0systematic review","volume":"73","author":"Malik","year":"2017","journal-title":"J.\u00a0Antimicrob. Chemother."},{"key":"10.1016\/j.chom.2018.07.002_bib42","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0053957","article-title":"Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E.\u00a0coli O157:H7 in the mouse intestine","volume":"8","author":"Maltby","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.chom.2018.07.002_bib43","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1038\/ismej.2011.139","article-title":"An improved greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea","volume":"6","author":"McDonald","year":"2012","journal-title":"ISME J."},{"key":"10.1016\/j.chom.2018.07.002_bib44","doi-asserted-by":"crossref","first-page":"396","DOI":"10.2307\/1591664","article-title":"Effect of short-chain fatty acids on the growth of Salmonella typhimurium in an in\u00a0vitro system","volume":"37","author":"McHan","year":"1993","journal-title":"Avian Dis."},{"key":"10.1016\/j.chom.2018.07.002_bib45","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.chom.2016.12.008","article-title":"The bactericidal lectin RegIII\u03b2 prolongs gut colonization and enteropathy in the streptomycin mouse model for Salmonella diarrhea","volume":"21","author":"Miki","year":"2017","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.chom.2018.07.002_bib46","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1084\/jem.20031319","article-title":"Salmonella typhimurium persists within macrophages in the mesenteric lymph nodes of chronically infected Nramp1+\/+ mice and can be reactivated by IFN\u03b3 neutralization","volume":"199","author":"Monack","year":"2004","journal-title":"J.\u00a0Exp. Med."},{"key":"10.1016\/j.chom.2018.07.002_bib47","doi-asserted-by":"crossref","first-page":"1770","DOI":"10.1056\/NEJMra020201","article-title":"Typhoid fever","volume":"347","author":"Parry","year":"2002","journal-title":"N.\u00a0Engl. J. Med."},{"key":"10.1016\/j.chom.2018.07.002_bib48","doi-asserted-by":"crossref","first-page":"1619","DOI":"10.3945\/jn.109.104638","article-title":"Butyrate enhances the intestinal barrier by facilitating tight junction assembly via activation of AMP-activated protein kinase in Caco-2 cell monolayers","volume":"139","author":"Peng","year":"2009","journal-title":"J.\u00a0Nutr."},{"key":"10.1016\/j.chom.2018.07.002_bib49","doi-asserted-by":"crossref","first-page":"1493","DOI":"10.1016\/j.cell.2016.05.003","article-title":"A comprehensive, CRISPR-based functional analysis of essential genes in bacteria","volume":"165","author":"Peters","year":"2016","journal-title":"Cell"},{"key":"10.1016\/j.chom.2018.07.002_bib50","doi-asserted-by":"crossref","first-page":"e9490","DOI":"10.1371\/journal.pone.0009490","article-title":"FastTree 2 \u2013 approximately maximum-likelihood trees for large alignments","volume":"5","author":"Price","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.chom.2018.07.002_bib51","doi-asserted-by":"crossref","first-page":"1323","DOI":"10.1038\/ismej.2014.14","article-title":"Phylogenetic distribution of three pathways for propionate production within the human gut microbiota","volume":"8","author":"Reichardt","year":"2014","journal-title":"ISME J."},{"key":"10.1016\/j.chom.2018.07.002_bib52","doi-asserted-by":"crossref","first-page":"632","DOI":"10.1093\/ps\/82.4.632","article-title":"Perspectives on the use of organic acids and short chain fatty acids as antimicrobials","volume":"82","author":"Ricke","year":"2003","journal-title":"Poult. Sci."},{"key":"10.1016\/j.chom.2018.07.002_bib53","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1016\/j.chom.2016.03.004","article-title":"Depletion of butyrate-producing clostridia from the gut microbiota drives an aerobic luminal expansion of Salmonella","volume":"19","author":"Rivera-Ch\u00e1vez","year":"2016","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.chom.2018.07.002_bib54","doi-asserted-by":"crossref","first-page":"2218","DOI":"10.1038\/ismej.2014.63","article-title":"Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men","volume":"8","author":"Salonen","year":"2014","journal-title":"ISME J."},{"key":"10.1016\/j.chom.2018.07.002_bib55","doi-asserted-by":"crossref","first-page":"E5044","DOI":"10.1073\/pnas.1608858113","article-title":"Salmonella Typhimurium utilizes a T6SS-mediated antibacterial weapon to establish in the host gut","volume":"113","author":"Sana","year":"2016","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.chom.2018.07.002_bib56","doi-asserted-by":"crossref","first-page":"4081","DOI":"10.4049\/jimmunol.1403169","article-title":"No vacancy: how beneficial microbes cooperate with immunity to provide colonization resistance to pathogens","volume":"194","author":"Sassone-Corsi","year":"2015","journal-title":"J.\u00a0Immunol."},{"key":"10.1016\/j.chom.2018.07.002_bib57","doi-asserted-by":"crossref","first-page":"280","DOI":"10.1038\/nature20557","article-title":"Microcins mediate competition among Enterobacteriaceae in the inflamed gut","volume":"540","author":"Sassone-Corsi","year":"2016","journal-title":"Nature"},{"key":"10.1016\/j.chom.2018.07.002_bib58","doi-asserted-by":"crossref","first-page":"612","DOI":"10.1111\/j.1365-2958.2011.07579.x","article-title":"High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics","volume":"80","author":"Sliusarenko","year":"2011","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.chom.2018.07.002_bib59","doi-asserted-by":"crossref","first-page":"e1000711","DOI":"10.1371\/journal.ppat.1000711","article-title":"Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria","volume":"6","author":"Stecher","year":"2010","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.chom.2018.07.002_bib60","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1186\/s12915-017-0348-8","article-title":"Rapid, precise quantification of bacterial cellular dimensions across a genomic-scale knockout library","volume":"15","author":"Ursell","year":"2017","journal-title":"BMC Biol."},{"key":"10.1016\/j.chom.2018.07.002_bib61","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1016\/S0168-1605(02)00542-1","article-title":"Invasion of Salmonella enteritidis in avian intestinal epithelial cells in\u00a0vitro is influenced by short-chain fatty acids","volume":"85","author":"Van Immerseel","year":"2003","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.chom.2018.07.002_bib62","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1186\/2047-217X-2-16","article-title":"EMPeror: a tool for visualizing high-throughput microbial community data","volume":"2","author":"V\u00e1zquez-Baeza","year":"2013","journal-title":"Gigascience"},{"key":"10.1016\/j.chom.2018.07.002_bib63","doi-asserted-by":"crossref","first-page":"94","DOI":"10.1038\/ismej.2011.82","article-title":"Impact of training sets on classification of high-throughput bacterial 16S rRNA gene surveys","volume":"6","author":"Werner","year":"2012","journal-title":"ISME J."}],"container-title":["Cell Host &amp; Microbe"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1931312818303718?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1931312818303718?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,15]],"date-time":"2026-05-15T08:07:43Z","timestamp":1778832463000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1931312818303718"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,8]]},"references-count":63,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2018,8]]}},"alternative-id":["S1931312818303718"],"URL":"https:\/\/doi.org\/10.1016\/j.chom.2018.07.002","relation":{},"ISSN":["1931-3128"],"issn-type":[{"value":"1931-3128","type":"print"}],"subject":[],"published":{"date-parts":[[2018,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection","name":"articletitle","label":"Article Title"},{"value":"Cell Host & Microbe","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.chom.2018.07.002","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2018 Elsevier Inc.","name":"copyright","label":"Copyright"}]}}