{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T17:15:54Z","timestamp":1786986954142,"version":"build-2736575974"},"reference-count":104,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100014587","name":"Patuakhali Science and Technology University","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100014587","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Comparative Immunology, Microbiology and Infectious Diseases"],"published-print":{"date-parts":[[2024,11]]},"DOI":"10.1016\/j.cimid.2024.102246","type":"journal-article","created":{"date-parts":[[2024,10,10]],"date-time":"2024-10-10T17:45:58Z","timestamp":1728582358000},"page":"102246","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["Whole genome sequencing of multidrug-resistant Klebsiella pneumoniae from poultry in Noakhali, Bangladesh: Assessing risk of transmission to humans in a pilot study"],"prefix":"10.1016","volume":"114","author":[{"given":"Md. Adnan","family":"Munim","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Afroza Akter","family":"Tanni","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Md Mobarok","family":"Hossain","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kallyan","family":"Chakma","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adnan","family":"Mannan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.M. Rafiqul","family":"Islam","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jully Gogoi","family":"Tiwari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shipan Das","family":"Gupta","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"5","key":"10.1016\/j.cimid.2024.102246_bib1","doi-asserted-by":"crossref","first-page":"1223","DOI":"10.1093\/jac\/dkz032","article-title":"Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages","volume":"74","author":"Musicha","year":"2019","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.cimid.2024.102246_bib2","doi-asserted-by":"crossref","first-page":"1184196","DOI":"10.3389\/fmicb.2023.1184196","article-title":"Genome dynamics of high-risk resistant and hypervirulent Klebsiella pneumoniae clones in Dhaka, Bangladesh","volume":"14","author":"Hussain","year":"2023","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib3","unstructured":"Prevention, Cf.D.Ca, Antibiotic Resistance Threats in the United States, 2013. 2013: United states."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib4","doi-asserted-by":"crossref","DOI":"10.4103\/jms.jms_25_17","article-title":"World health organization releases global priority list of antibiotic-resistant bacteria to guide research, discovery, and development of new antibiotics","volume":"32","author":"Shrivastava","year":"2018","journal-title":"J. Med. Soc."},{"key":"10.1016\/j.cimid.2024.102246_bib5","unstructured":"Affairs, Do.HaDf.E.F.R., UK Five Year Antimicrobial Resistance Strategy 2013 to 2018. 10 September 2013. 2013."},{"issue":"6153","key":"10.1016\/j.cimid.2024.102246_bib6","doi-asserted-by":"crossref","first-page":"1514","DOI":"10.1126\/science.1240578","article-title":"Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts","volume":"341","author":"Mather","year":"2013","journal-title":"Science"},{"issue":"2","key":"10.1016\/j.cimid.2024.102246_bib7","doi-asserted-by":"crossref","DOI":"10.1128\/mSphere.00023-20","article-title":"Emergence of mobile colistin resistance (mcr-8) in a highly successful Klebsiella pneumoniae sequence type 15 clone from clinical infections in Bangladesh","volume":"5","author":"Farzana","year":"2020","journal-title":"Msphere"},{"issue":"2","key":"10.1016\/j.cimid.2024.102246_bib8","doi-asserted-by":"crossref","first-page":"123","DOI":"10.4103\/ijabmr.ijabmr_747_21","article-title":"Association of Virulence with Antimicrobial Resistance among Klebsiella pneumoniae Isolated from Hospital Settings in Bangladesh","volume":"12","author":"Kawser","year":"2022","journal-title":"Int. J. Appl. Basic Med. Res."},{"key":"10.1016\/j.cimid.2024.102246_bib9","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1007\/s10096-021-04177-7","article-title":"Whole-genome sequencing of Egyptian multidrug-resistant Klebsiella pneumoniae isolates: a multi-center pilot study","volume":"40","author":"Sherif","year":"2021","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"issue":"9","key":"10.1016\/j.cimid.2024.102246_bib10","doi-asserted-by":"crossref","first-page":"1116","DOI":"10.3390\/ph15091116","article-title":"Healthcare facilities as potential reservoirs of antimicrobial resistant Klebsiella pneumoniae: an emerging concern to public health in Bangladesh","volume":"15","author":"Mahmud","year":"2022","journal-title":"Pharmaceuticals"},{"issue":"9","key":"10.1016\/j.cimid.2024.102246_bib11","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0257419","article-title":"Prevalence and molecular characterization of antibiotic resistance and associated genes in Klebsiella pneumoniae isolates: A clinical observational study in different hospitals in Chattogram, Bangladesh","volume":"16","author":"Tanni","year":"2021","journal-title":"Plos One"},{"issue":"10","key":"10.1016\/j.cimid.2024.102246_bib12","doi-asserted-by":"crossref","DOI":"10.13057\/biodiv\/d211024","article-title":"Detection and prevalence of multidrug-resistant Klebsiella pneumoniae strains isolated from poultry farms in Blitar, Indonesia","volume":"21","author":"Permatasari","year":"2020","journal-title":"Biodiversitas J. Biol. Divers."},{"issue":"4","key":"10.1016\/j.cimid.2024.102246_bib13","doi-asserted-by":"crossref","first-page":"e01386-23","DOI":"10.1128\/spectrum.01386-23","article-title":"From Farm to Fork: Persistence of Clinically Relevant Multidrug-Resistant and Copper-Tolerant Klebsiella pneumoniae Long after Colistin Withdrawal in Poultry Production","volume":"11","author":"Mour\u00e3o","year":"2023","journal-title":"Microbiol. Spectr."},{"issue":"9","key":"10.1016\/j.cimid.2024.102246_bib14","doi-asserted-by":"crossref","DOI":"10.1016\/j.psj.2022.102002","article-title":"Prevalence and antimicrobial susceptibility profiles of ESBL-producing Klebsiella pneumoniae from broiler chicken farms in Shandong Province, China","volume":"101","author":"Li","year":"2022","journal-title":"Poult. Sci."},{"issue":"10","key":"10.1016\/j.cimid.2024.102246_bib15","doi-asserted-by":"crossref","first-page":"2234","DOI":"10.1093\/jac\/dkt180","article-title":"Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data","volume":"68","author":"Stoesser","year":"2013","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.cimid.2024.102246_bib16","doi-asserted-by":"crossref","DOI":"10.1155\/2019\/7960268","article-title":"Multidrug-resistant bacteria from raw meat of buffalo and chicken, Nepal","volume":"2019","author":"Saud","year":"2019","journal-title":"Vet. Med. Int."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib17","doi-asserted-by":"crossref","DOI":"10.1016\/j.psj.2021.101094","article-title":"Research Note: Characterization of antibiotic resistant phenotypes and linked genes of Escherichia coli and Klebsiella pneumoniae from healthy broiler chickens, Karnataka, India","volume":"100","author":"Bhardwaj","year":"2021","journal-title":"Poult. Sci."},{"key":"10.1016\/j.cimid.2024.102246_bib18","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1016\/j.jgar.2016.06.004","article-title":"Carbapenemase-producing Klebsiella pneumoniae in broiler poultry farming in Egypt","volume":"7","author":"Hamza","year":"2016","journal-title":"J. Glob. Antimicrob. Resist."},{"issue":"10","key":"10.1016\/j.cimid.2024.102246_bib19","doi-asserted-by":"crossref","first-page":"2022","DOI":"10.4315\/0362-028X-68.10.2022","article-title":"Multidrug-resistant Klebsiella pneumoniae isolated from farm environments and retail products in Oklahoma","volume":"68","author":"Kim","year":"2005","journal-title":"J. Food Prot."},{"key":"10.1016\/j.cimid.2024.102246_bib20","doi-asserted-by":"crossref","DOI":"10.1002\/vms3.1168","article-title":"Characterization of multidrug and heavy metal resistance of carbapenemases producing Klebsiella pneumoniae from poultry samples in Bangladesh","author":"Saha","year":"2023","journal-title":"Vet. Med. Sci."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib21","doi-asserted-by":"crossref","first-page":"10818","DOI":"10.1038\/s41598-022-14883-7","article-title":"Sink survey to investigate multidrug resistance pattern of common foodborne bacteria from wholesale chicken markets in Dhaka city of Bangladesh","volume":"12","author":"Parvin","year":"2022","journal-title":"Sci. Rep."},{"issue":"12","key":"10.1016\/j.cimid.2024.102246_bib22","doi-asserted-by":"crossref","first-page":"2713","DOI":"10.14202\/vetworld.2020.2713-2727","article-title":"Antimicrobial resistance situation in animal health of Bangladesh","volume":"13","author":"Al Amin","year":"2020","journal-title":"Vet. World"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib23","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1002\/vms3.664","article-title":"Epidemiology and antimicrobial resistance of Escherichia coli in broiler chickens, farmworkers, and farm sewage in Bangladesh","volume":"8","author":"Mandal","year":"2022","journal-title":"Vet. Med. Sci."},{"key":"10.1016\/j.cimid.2024.102246_bib24","unstructured":"Economy, L., Livestock Economy at a Glance 2019\u20132020, D.o.L. Services, Editor. 2021."},{"issue":"3","key":"10.1016\/j.cimid.2024.102246_bib25","doi-asserted-by":"crossref","first-page":"546","DOI":"10.5455\/javar.2020.g452","article-title":"Seroprevalence and risk factors of avian reovirus in backyard chickens in different areas of Mymensingh district in Bangladesh","volume":"7","author":"Islam","year":"2020","journal-title":"J. Adv. Vet. Anim. Res."},{"issue":"12","key":"10.1016\/j.cimid.2024.102246_bib26","doi-asserted-by":"crossref","first-page":"7240","DOI":"10.1128\/AAC.03320-14","article-title":"Genotypic and phenotypic profiles of Escherichia coli isolates belonging to clinical sequence type 131 (ST131), clinical non-ST131, and fecal non-ST131 lineages from India","volume":"58","author":"Hussain","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib27","doi-asserted-by":"crossref","first-page":"598","DOI":"10.1016\/j.ijantimicag.2016.09.016","article-title":"Colistin use and colistin resistance in bacteria from animals","volume":"48","author":"Kempf","year":"2016","journal-title":"Int. J. Antimicrob. Agents"},{"issue":"11","key":"10.1016\/j.cimid.2024.102246_bib28","doi-asserted-by":"crossref","first-page":"6991","DOI":"10.1128\/AAC.01472-16","article-title":"First detection of the mcr-1 gene in Escherichia coli isolated from livestock between 2013 and 2015 in South Korea","volume":"60","author":"Lim","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib29","doi-asserted-by":"crossref","first-page":"17292","DOI":"10.1038\/s41598-020-74402-4","article-title":"High abundance of the colistin resistance gene mcr-1 in chicken gut-bacteria in Bangladesh","volume":"10","author":"Islam","year":"2020","journal-title":"Sci. Rep."},{"issue":"7","key":"10.1016\/j.cimid.2024.102246_bib30","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00361-17","article-title":"Genomic insights into mcr-1-positive plasmids carried by colistin-resistant Escherichia coli isolates from inpatients","volume":"61","author":"Wang","year":"2017","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib31","doi-asserted-by":"crossref","first-page":"30","DOI":"10.3329\/sjm.v10i1.50730","article-title":"The occurrence of drug-resistant bacteria and screening the possible presence of residual antibiotics in poultry feed samples","volume":"10","author":"Hossain","year":"2020","journal-title":"Stamford J. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib32","first-page":"3","article-title":"Frequency Of Isolation Of Salmonella From Commercial Poultry Feeds And Their Anti-Microbial Resistance Profiles, Imo State","volume":"2","author":"Okoli","year":"2006","journal-title":"Niger. Online J. Health Allied Scs"},{"issue":"3","key":"10.1016\/j.cimid.2024.102246_bib33","doi-asserted-by":"crossref","first-page":"371","DOI":"10.17576\/jsm-2015-4403-08","article-title":"Occurrence of antibiotic resistant bacteria in pond water associated with integrated poultry-fish farming in Bangladesh","volume":"44","author":"Neela","year":"2015","journal-title":"Sains Malays."},{"issue":"3","key":"10.1016\/j.cimid.2024.102246_bib34","doi-asserted-by":"crossref","first-page":"201","DOI":"10.3390\/pathogens9030201","article-title":"Molecular detection of multidrug resistant Salmonella species isolated from broiler farm in Bangladesh","volume":"9","author":"Alam","year":"2020","journal-title":"Pathogens"},{"issue":"2","key":"10.1016\/j.cimid.2024.102246_bib35","doi-asserted-by":"crossref","first-page":"103","DOI":"10.3329\/bjm.v34i2.39620","article-title":"Microbiological analysis of poultry feeds along with the demonstration of the antibiotic susceptibility of the isolates and the antibacterial activity of the feeds","volume":"34","author":"Roy","year":"2017","journal-title":"Bangladesh J. Microbiol."},{"issue":"3","key":"10.1016\/j.cimid.2024.102246_bib36","doi-asserted-by":"crossref","first-page":"118","DOI":"10.3390\/pathogens8030118","article-title":"Susceptibility and multidrug resistance patterns of Escherichia coli isolated from cloacal swabs of live broiler chickens in Bangladesh","volume":"8","author":"Al Azad","year":"2019","journal-title":"Pathogens"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib37","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s40168-018-0419-2","article-title":"Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes","volume":"6","author":"Xiong","year":"2018","journal-title":"Microbiome"},{"issue":"7","key":"10.1016\/j.cimid.2024.102246_bib38","doi-asserted-by":"crossref","first-page":"780","DOI":"10.1089\/mdr.2021.0264","article-title":"Molecular Characterization of Clinically Relevant Extended-Spectrum \u03b2-Lactamases bla CTX-M-15-Producing Enterobacteriaceae Isolated from Free-Range Chicken from Households in Bangladesh","volume":"28","author":"Hasan","year":"2022","journal-title":"Microb. Drug Resist."},{"issue":"2","key":"10.1016\/j.cimid.2024.102246_bib39","doi-asserted-by":"crossref","first-page":"165","DOI":"10.3329\/bmrcb.v47i2.57775","article-title":"ESBL genes, blaTEM, blaOXA, and blaSHV in poultry gut bacteria: an endemic public health burden in Bangladesh: ESBL genes in poultry gut bacteria","volume":"47","author":"Nahar","year":"2021","journal-title":"Bangladesh Med. Res. Counc. Bull."},{"issue":"4","key":"10.1016\/j.cimid.2024.102246_bib40","doi-asserted-by":"crossref","first-page":"578","DOI":"10.14202\/vetworld.2019.578-583","article-title":"Molecular detection of extended-spectrum \u03b2-lactamase-producing Klebsiella pneumoniae isolates of chicken origin from East Java, Indonesia","volume":"12","author":"Hayati","year":"2019","journal-title":"Vet. World"},{"key":"10.1016\/j.cimid.2024.102246_bib41","doi-asserted-by":"crossref","first-page":"S71","DOI":"10.1016\/j.ijid.2023.04.178","article-title":"WHOLE GENOME SEQUENCING REVEALS DIVERSE MODES OF CARBAPENEMASE GENE DISSEMINATION IN INDIAN Klebsiella pneumoniae CLINICAL ISOLATES","volume":"130","author":"Shamanna","year":"2023","journal-title":"Int. J. Infect. Dis."},{"key":"10.1016\/j.cimid.2024.102246_bib42","doi-asserted-by":"crossref","DOI":"10.1016\/j.micpath.2020.104562","article-title":"Healthy broilers disseminate antibiotic resistance in response to tetracycline input in feed concentrates","volume":"149","author":"Sreejith","year":"2020","journal-title":"Microb. Pathog."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib43","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1016\/S1473-3099(18)30605-4","article-title":"Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis","volume":"19","author":"Cassini","year":"2019","journal-title":"Lancet Infect. Dis."},{"issue":"8","key":"10.1016\/j.cimid.2024.102246_bib44","doi-asserted-by":"crossref","first-page":"1264","DOI":"10.3390\/ani10081264","article-title":"A review of antimicrobial resistance in poultry farming within low-resource settings","volume":"10","author":"Hedman","year":"2020","journal-title":"Animals"},{"issue":"3","key":"10.1016\/j.cimid.2024.102246_bib45","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1016\/S0168-1605(00)00376-7","article-title":"Application of foodborne disease outbreak data in the development and maintenance of HACCP systems","volume":"59","author":"Panisello","year":"2000","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib46","article-title":"Situation of antibiotic resistance in Bangladesh and its association with resistance genes for horizontal transfer","author":"Safain","year":"2020","journal-title":"BioRxiv"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib47","first-page":"7071009","article-title":"Investigating Antimicrobial Resistance and ESBL Producing Gene in Klebsiella Isolates among Neonates and Adolescents in Southern Bangladesh","volume":"2022","author":"Tanni","year":"2022","journal-title":"Can. J. Infect. Dis. Med. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib48","series-title":"Antimicrobial Resistance: Global Report on Surveillance","author":"Organization","year":"2014"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib49","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0227947","article-title":"Tackling antimicrobial resistance in Bangladesh: A scoping review of policy and practice in human, animal and environment sectors","volume":"15","author":"Hoque","year":"2020","journal-title":"PloS One"},{"key":"10.1016\/j.cimid.2024.102246_bib50","article-title":"Bergey's manual of determinative bacteriology","author":"Breed","year":"1957","journal-title":"Bergey'S. Man. Determinative Bacteriol."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib51","doi-asserted-by":"crossref","first-page":"3456","DOI":"10.1128\/AEM.69.6.3456-3461.2003","article-title":"Evaluation of DNA extraction methods for use in combination with SYBR green I real-time PCR to detect Salmonella enterica serotype enteritidis in poultry","volume":"69","author":"De Medici","year":"2003","journal-title":"Appl. Environ. Microbiol."},{"issue":"8","key":"10.1016\/j.cimid.2024.102246_bib52","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0292638","article-title":"Multi-drug resistant (MDR) Gram-negative pathogenic bacteria isolated from poultry in the Noakhali region of Bangladesh","volume":"19","author":"Munim","year":"2024","journal-title":"Plos One"},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib53","first-page":"519","article-title":"Survey and rapid detection of Klebsiella pneumoniae in clinical samples targeting the rcsA gene in Beijing, China","author":"Dong","year":"2015","journal-title":"Front. Microbiol."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib54","doi-asserted-by":"crossref","first-page":"3832","DOI":"10.1128\/AEM.02869-05","article-title":"Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China","volume":"72","author":"Jiang","year":"2006","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib55","first-page":"55","article-title":"Kirby-Bauer disk diffusion susceptibility test protocol","volume":"15","author":"Hudzicki","year":"2009","journal-title":"Am. Soc. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib56","unstructured":"Wayne, P., Clinical and Laboratory Standards Institute: Performance standards for antimicrobial susceptibility testing: 20th informational supplement. CLSI document M100-S20, 2010."},{"issue":"4","key":"10.1016\/j.cimid.2024.102246_bib57","doi-asserted-by":"crossref","first-page":"306","DOI":"10.3343\/alm.2020.40.4.306","article-title":"Determination of colistin resistance by simple disk diffusion test using modified mueller-hinton agar","volume":"40","author":"Uwizeyimana","year":"2020","journal-title":"Ann. Lab. Med."},{"issue":"7","key":"10.1016\/j.cimid.2024.102246_bib58","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0254753","article-title":"Distribution and molecular characterization of ESBL, pAmpC \u03b2-lactamases, and non-\u03b2-lactam encoding genes in Enterobacteriaceae isolated from hospital wastewater in Eastern Cape Province, South Africa","volume":"16","author":"Fadare","year":"2021","journal-title":"PLoS One"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib59","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1128\/aem.46.1.165-170.1983","article-title":"Multiple antibiotic resistance indexing of Escherichia coli to identify high-risk sources of fecal contamination of foods","volume":"46","author":"Krumperman","year":"1983","journal-title":"Appl. Environ. Microbiol."},{"issue":"3","key":"10.1016\/j.cimid.2024.102246_bib60","first-page":"164-168","article-title":"Multiple antibiotic resistance (MAR) indices of Pseudomonas and Klebsiella species isolates in Lagos University Teaching Hospital","volume":"14","author":"Osundiya","year":"2013","journal-title":"Afr. J. Clin. Exp. Microbiol."},{"issue":"5","key":"10.1016\/j.cimid.2024.102246_bib61","doi-asserted-by":"crossref","first-page":"14","DOI":"10.2174\/1874285801105010014","article-title":"Optimising bacterial DNA extraction from faecal samples: comparison of three methods","author":"Smith","year":"2011","journal-title":"Open Microbiol. J."},{"key":"10.1016\/j.cimid.2024.102246_bib62","unstructured":"Biolabs, N.E., E7805 NEBNext\u00ae Ultra\u2122 II FS DNA Library Prep Kit for Illumina\u00ae Protocol to use with Inputs\u2265 100 ng (Chapter 2). 2023."},{"issue":"4","key":"10.1016\/j.cimid.2024.102246_bib63","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pmed.1002794","article-title":"Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation","volume":"16","author":"Colman","year":"2019","journal-title":"PLoS Med."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib64","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: resolving bacterial genome assemblies from short and long sequencing reads","volume":"13","author":"Wick","year":"2017","journal-title":"PLoS Comput. Biol."},{"key":"10.1016\/j.cimid.2024.102246_bib65","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.10121","article-title":"The Bacteria Genome Pipeline (BAGEP): an automated, scalable workflow for bacteria genomes with Snakemake","volume":"8","author":"Olawoye","year":"2020","journal-title":"PeerJ"},{"key":"10.1016\/j.cimid.2024.102246_bib66","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12864-019-5445-3","article-title":"SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies","volume":"19","author":"Yang","year":"2019","journal-title":"BMC Genom."},{"issue":"11","key":"10.1016\/j.cimid.2024.102246_bib67","doi-asserted-by":"crossref","first-page":"473","DOI":"10.1007\/s13205-021-03020-2","article-title":"Revealing the potential of Klebsiella pneumoniae PVN-1 for plant beneficial attributes by genome sequencing and analysis","volume":"11","author":"Jha","year":"2021","journal-title":"3 Biotech"},{"issue":"14","key":"10.1016\/j.cimid.2024.102246_bib68","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib69","article-title":"ResFinder\u2013an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes","volume":"8","author":"Florensa","year":"2022","journal-title":"Microb. Genom."},{"key":"10.1016\/j.cimid.2024.102246_bib70","doi-asserted-by":"crossref","first-page":"102","DOI":"10.1007\/BF02596306","article-title":"Impact of therapeutic guidelines on antibiotic use by residents in primary care clinics","volume":"2","author":"Faryna","year":"1987","journal-title":"J. Gen. Intern. Med."},{"issue":"2","key":"10.1016\/j.cimid.2024.102246_bib71","doi-asserted-by":"crossref","first-page":"111","DOI":"10.5946\/ce.2012.45.2.111","article-title":"Is Antibiotic resistance microorganism becoming a significant problem in acute cholangitis in Korea?","volume":"45","author":"Park","year":"2012","journal-title":"Clin. Endosc."},{"issue":"5","key":"10.1016\/j.cimid.2024.102246_bib72","first-page":"469","article-title":"Evaluation of antimicrobial effects of Prosopis cineraria leaves","volume":"2","author":"Wajid","year":"2014","journal-title":"World J. Pharm. Sci."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib73","doi-asserted-by":"crossref","first-page":"500","DOI":"10.1016\/j.ijantimicag.2014.07.020","article-title":"Worldwide emergence of colistin resistance in Klebsiella pneumoniae from healthy humans and patients in Lao PDR, Thailand, Israel, Nigeria and France owing to inactivation of the PhoP\/PhoQ regulator mgrB: an epidemiological and molecular study","volume":"44","author":"Olaitan","year":"2014","journal-title":"Int. J. Antimicrob. Agents"},{"key":"10.1016\/j.cimid.2024.102246_bib74","unstructured":"mondiale de la Sant\u00e9, O., The world health report 1997. Conquering suffering, enriching humanity. 1997, Gen\u00e8ve: OMS."},{"issue":"4","key":"10.1016\/j.cimid.2024.102246_bib75","article-title":"Survival and growth of antibiotic resistant bacteria in treated wastewater and water distribution system and their implication in human health: a review","volume":"4","author":"Al-Bahry","year":"2014","journal-title":"Int. Arab. J. Antimicrob. Agents"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib76","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1016\/j.jiph.2020.11.001","article-title":"Spread of OXA-48-producing Klebsiella pneumoniae among COVID-19-infected patients: The storm after the storm","volume":"14","author":"Garc\u00eda-Meni\u00f1o","year":"2021","journal-title":"J. Infect. Public Health"},{"key":"10.1016\/j.cimid.2024.102246_bib77","doi-asserted-by":"crossref","DOI":"10.3389\/fvets.2020.576113","article-title":"A cross-sectional study of antimicrobial usage on commercial broiler and layer chicken farms in Bangladesh","volume":"7","author":"Imam","year":"2020","journal-title":"Front. Vet. Sci."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib78","doi-asserted-by":"crossref","first-page":"16622","DOI":"10.1038\/s41598-021-96169-y","article-title":"Antibiotic-resistant bacteria, antibiotic resistance genes, and antibiotic residues in wastewater from a poultry slaughterhouse after conventional and advanced treatments","volume":"11","author":"Savin","year":"2021","journal-title":"Sci. Rep."},{"issue":"3","key":"10.1016\/j.cimid.2024.102246_bib79","article-title":"Evaluation of the Genetic Diversity of Antibiotic-resistant Klebsiella pneumoniae Isolated from Diarrheal Humans and Poultry using Multilocus Sequence Typing.","volume":"15","author":"Hasson","year":"2022","journal-title":"Jordan J. Biol. Sci."},{"key":"10.1016\/j.cimid.2024.102246_bib80","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2020.108750","article-title":"Chicken and turkey meat: Consumer exposure to multidrug-resistant Enterobacteriaceae including mcr-carriers, uropathogenic E. coli and high-risk lineages such as ST131","volume":"331","author":"D\u00edaz-Jim\u00e9nez","year":"2020","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib81","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2024.110605","article-title":"Comparative analysis of multidrug-resistant Klebsiella pneumoniae strains of food and human origin reveals overlapping populations","volume":"413","author":"Silva-Bea","year":"2024","journal-title":"Int. J. Food Microbiol."},{"issue":"5","key":"10.1016\/j.cimid.2024.102246_bib82","doi-asserted-by":"crossref","first-page":"545","DOI":"10.3390\/pathogens11050545","article-title":"Antimicrobial resistance and virulence characteristics of Klebsiella pneumoniae isolates in Kenya by whole-genome sequencing","volume":"11","author":"Muraya","year":"2022","journal-title":"Pathogens"},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib83","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1080\/22221751.2022.2036078","article-title":"Emergence of colistin-resistant hypervirulent Klebsiella pneumoniae (CoR-HvKp) in China","volume":"11","author":"Liu","year":"2022","journal-title":"Emerg. Microbes Infect."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib84","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1186\/s12866-023-03074-7","article-title":"Whole genome structure and resistance genes in carbapenemase-producing multidrug resistant ST378 Klebsiella pneumoniae","volume":"23","author":"Kyung","year":"2023","journal-title":"BMC Microbiol."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib85","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0099209","article-title":"Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain","volume":"9","author":"Hudson","year":"2014","journal-title":"PloS One"},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib86","doi-asserted-by":"crossref","first-page":"1038","DOI":"10.3201\/eid2206.151840","article-title":"Rapid detection of polymyxin resistance in Enterobacteriaceae","volume":"22","author":"Nordmann","year":"2016","journal-title":"Emerg. Infect. Dis."},{"issue":"8","key":"10.1016\/j.cimid.2024.102246_bib87","doi-asserted-by":"crossref","first-page":"4399","DOI":"10.1128\/AAC.02555-14","article-title":"In vivo evolution to colistin resistance by PmrB sensor kinase mutation in KPC-producing Klebsiella pneumoniae is associated with low-dosage colistin treatment","volume":"58","author":"Cannatelli","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"5","key":"10.1016\/j.cimid.2024.102246_bib88","doi-asserted-by":"crossref","first-page":"2909","DOI":"10.1128\/AAC.04763-14","article-title":"Colistin resistance mechanisms in Klebsiella pneumoniae strains from Taiwan","volume":"59","author":"Cheng","year":"2015","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib89","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1093\/jac\/dkt315","article-title":"Mutant prevention concentrations of colistin for Acinetobacter baumannii, Pseudomonas aeruginosa and Klebsiella pneumoniae clinical isolates","volume":"69","author":"Choi","year":"2014","journal-title":"J. Antimicrob. Chemother."},{"issue":"12","key":"10.1016\/j.cimid.2024.102246_bib90","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1000788","article-title":"Feedback inhibition in the PhoQ\/PhoP signaling system by a membrane peptide","volume":"5","author":"Lippa","year":"2009","journal-title":"PLoS Genet."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib91","doi-asserted-by":"crossref","first-page":"3709","DOI":"10.1128\/AAC.00009-16","article-title":"Amino acid substitutions of CrrB responsible for resistance to colistin through CrrC in Klebsiella pneumoniae","volume":"60","author":"Cheng","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib92","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004627","article-title":"Elucidation of the RamA regulon in Klebsiella pneumoniae reveals a role in LPS regulation","volume":"11","author":"De Majumdar","year":"2015","journal-title":"PLoS Pathog."},{"issue":"1","key":"10.1016\/j.cimid.2024.102246_bib93","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1128\/AAC.00715-09","article-title":"and S. Albert\u00ed, Klebsiella pneumoniae AcrAB efflux pump contributes to antimicrobial resistance and virulence.","volume":"54","author":"Padilla","year":"2010","journal-title":"Antimicrob. Agents Chemother."},{"issue":"9","key":"10.1016\/j.cimid.2024.102246_bib94","doi-asserted-by":"crossref","first-page":"4449","DOI":"10.1128\/AAC.02284-12","article-title":"KpnEF, a new member of the Klebsiella pneumoniae cell envelope stress response regulon, is an SMR-type efflux pump involved in broad-spectrum antimicrobial resistance","volume":"57","author":"Srinivasan","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib95","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1016\/j.ijantimicag.2016.06.023","article-title":"Molecular mechanisms of polymyxin resistance: knowns and unknowns","volume":"48","author":"Baron","year":"2016","journal-title":"Int. J. Antimicrob. Agents"},{"issue":"6","key":"10.1016\/j.cimid.2024.102246_bib96","doi-asserted-by":"crossref","first-page":"898","DOI":"10.1016\/j.ijantimicag.2018.03.020","article-title":"Role of association of OmpK35 and OmpK36 alteration and blaESBL and\/or blaAmpC genes in conferring carbapenem resistance among non-carbapenemase-producing Klebsiella pneumoniae","volume":"52","author":"Hamzaoui","year":"2018","journal-title":"Int. J. Antimicrob. Agents"},{"issue":"10","key":"10.1016\/j.cimid.2024.102246_bib97","doi-asserted-by":"crossref","first-page":"4742","DOI":"10.1128\/AAC.00309-11","article-title":"OmpK26, a novel porin associated with carbapenem resistance in Klebsiella pneumoniae","volume":"55","author":"Garc\u00eda-Sureda","year":"2011","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.cimid.2024.102246_bib98","doi-asserted-by":"crossref","first-page":"1193274","DOI":"10.3389\/fmicb.2023.1193274","article-title":"Population dynamics and characteristics of Klebsiella pneumoniae from healthy poultry in Norway","volume":"14","author":"Kaspersen","year":"2023","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib99","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.725414","article-title":"Exploring Klebsiella pneumoniae in healthy poultry reveals high genetic diversity, good biofilm-forming abilities and higher prevalence in turkeys than broilers","volume":"12","author":"Franklin-Alming","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib100","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/j.vetmic.2018.02.023","article-title":"Extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae in local and imported poultry meat in Ghana","volume":"217","author":"Eibach","year":"2018","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.cimid.2024.102246_bib101","doi-asserted-by":"crossref","first-page":"1103319","DOI":"10.3389\/fcimb.2023.1103319","article-title":"Occurrence of extended-spectrum \u03b2-lactamase harboring K. pneumoniae in various sources: a one health perspective","volume":"13","author":"Yasmeen","year":"2023","journal-title":"Front. Cell. Infect. Microbiol."},{"issue":"4","key":"10.1016\/j.cimid.2024.102246_bib102","doi-asserted-by":"crossref","first-page":"465","DOI":"10.3329\/bjsir.v42i4.755","article-title":"Propagation of heavy metals in poultry feed production in Bangladesh","volume":"42","author":"Islam","year":"2007","journal-title":"Bangladesh J. Sci. Ind. Res."},{"issue":"4","key":"10.1016\/j.cimid.2024.102246_bib103","doi-asserted-by":"crossref","first-page":"662","DOI":"10.3390\/antibiotics12040662","article-title":"Assessment of heavy metals contamination and antimicrobial drugs residue in broiler edible tissues in Bangladesh","volume":"12","author":"Bokhtiar","year":"2023","journal-title":"Antibiotics"},{"issue":"7","key":"10.1016\/j.cimid.2024.102246_bib104","doi-asserted-by":"crossref","first-page":"1085809","DOI":"10.3389\/fsufs.2023.1085809","article-title":"Heavy metal contamination in retailed food in Bangladesh: a dietary public health risk assessment","author":"Begum","year":"2023","journal-title":"Front. Sustain. Food Syst."}],"container-title":["Comparative Immunology, Microbiology and Infectious Diseases"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0147957124001231?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0147957124001231?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T19:14:21Z","timestamp":1777490061000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0147957124001231"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,11]]},"references-count":104,"alternative-id":["S0147957124001231"],"URL":"https:\/\/doi.org\/10.1016\/j.cimid.2024.102246","relation":{},"ISSN":["0147-9571"],"issn-type":[{"value":"0147-9571","type":"print"}],"subject":[],"published":{"date-parts":[[2024,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Whole genome sequencing of multidrug-resistant Klebsiella pneumoniae from poultry in Noakhali, Bangladesh: Assessing risk of transmission to humans in a pilot study","name":"articletitle","label":"Article Title"},{"value":"Comparative Immunology, Microbiology and Infectious Diseases","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.cimid.2024.102246","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"102246"}}