{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,28]],"date-time":"2026-08-28T00:44:41Z","timestamp":1787877881457,"version":"build-2784847793"},"reference-count":85,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,1,30]],"date-time":"2026-01-30T00:00:00Z","timestamp":1769731200000},"content-version":"vor","delay-in-days":29,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000199","name":"U.S. Department of Agriculture","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000199","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["S1077"],"award-info":[{"award-number":["S1077"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Current Research in Food Science"],"published-print":{"date-parts":[[2026]]},"DOI":"10.1016\/j.crfs.2026.101332","type":"journal-article","created":{"date-parts":[[2026,2,3]],"date-time":"2026-02-03T00:36:01Z","timestamp":1770078961000},"page":"101332","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":3,"special_numbering":"C","title":["Genomic insights into dominant lactic acid bacteria in spoiled plant-based meat analogues"],"prefix":"10.1016","volume":"12","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1935-9721","authenticated-orcid":false,"given":"Xiran","family":"Li","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4959-6477","authenticated-orcid":false,"given":"Luxin","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"D1","key":"10.1016\/j.crfs.2026.101332_bib1","doi-asserted-by":"crossref","first-page":"D690","DOI":"10.1093\/nar\/gkac920","article-title":"Card 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database","volume":"51","author":"Alcock","year":"2023","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib2","doi-asserted-by":"crossref","first-page":"258","DOI":"10.1186\/s13059-022-02823-7","article-title":"Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing","volume":"23","author":"Alonge","year":"2022","journal-title":"Genome Biol."},{"issue":"W1","key":"10.1016\/j.crfs.2026.101332_bib3","doi-asserted-by":"crossref","first-page":"W32","DOI":"10.1093\/nar\/gkaf334","article-title":"antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation","volume":"53","author":"Blin","year":"2025","journal-title":"Nucleic Acids Res."},{"issue":"19","key":"10.1016\/j.crfs.2026.101332_bib4","doi-asserted-by":"crossref","DOI":"10.3390\/su151914336","article-title":"Safety and nutritional risks associated with plant-based meat alternatives","volume":"15","author":"Bogueva","year":"2023","journal-title":"Sustainability"},{"issue":"4","key":"10.1016\/j.crfs.2026.101332_bib5","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1016\/j.fshw.2019.11.006","article-title":"An investigation of the formulation and nutritional composition of modern meat analogue products","volume":"8","author":"Bohrer","year":"2019","journal-title":"Food Sci. Hum. Wellness"},{"issue":"5","key":"10.1016\/j.crfs.2026.101332_bib6","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.00923-16","article-title":"Peptidoglycan recycling in gram-positive bacteria is crucial for survival in stationary phase","volume":"7","author":"Borisova","year":"2016","journal-title":"mBio"},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib7","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1186\/1475-2859-8-28","article-title":"Heme and menaquinone induced electron transport in lactic acid bacteria","volume":"8","author":"Brooijmans","year":"2009","journal-title":"Microb. Cell Fact."},{"issue":"3","key":"10.1016\/j.crfs.2026.101332_bib8","doi-asserted-by":"crossref","DOI":"10.1128\/mSystems.00208-17","article-title":"luxR homolog-linked biosynthetic gene clusters in Proteobacteria","volume":"3","author":"Brotherton","year":"2018","journal-title":"mSystems"},{"key":"10.1016\/j.crfs.2026.101332_bib9","series-title":"Expert Meeting on How to Feed the World in","article-title":"The resource outlook to 2050","author":"Bruinsma","year":"2009"},{"issue":"8","key":"10.1016\/j.crfs.2026.101332_bib10","doi-asserted-by":"crossref","first-page":"1303","DOI":"10.1038\/s41587-023-01953-y","article-title":"Identification of mobile genetic elements with geNomad","volume":"42","author":"Camargo","year":"2024","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.crfs.2026.101332_bib11","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1016\/j.fm.2014.02.002","article-title":"Bacterial populations and the volatilome associated to meat spoilage","volume":"45","author":"Casaburi","year":"2015","journal-title":"Food Microbiol."},{"issue":"3","key":"10.1016\/j.crfs.2026.101332_bib12","doi-asserted-by":"crossref","DOI":"10.1088\/1748-9326\/8\/3\/034015","article-title":"Redefining agricultural yields: from tonnes to people nourished per hectare","volume":"8","author":"Cassidy","year":"2013","journal-title":"Environ. Res. Lett."},{"issue":"12","key":"10.1016\/j.crfs.2026.101332_bib13","doi-asserted-by":"crossref","first-page":"1527","DOI":"10.1038\/nbt1160","article-title":"The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K","volume":"23","author":"Chaillou","year":"2005","journal-title":"Nat. Biotechnol."},{"issue":"10","key":"10.1016\/j.crfs.2026.101332_bib14","doi-asserted-by":"crossref","first-page":"839","DOI":"10.1016\/S0923-2508(01)01267-0","article-title":"Lactobacillus sakei: recent developments and future prospects","volume":"152","author":"Champomier-Verg\u00e8s","year":"2001","journal-title":"Res. Microbiol."},{"issue":"23","key":"10.1016\/j.crfs.2026.101332_bib15","doi-asserted-by":"crossref","first-page":"5315","DOI":"10.1093\/bioinformatics\/btac672","article-title":"GTDB-Tk v2: memory friendly classification with the genome taxonomy database","volume":"38","author":"Chaumeil","year":"2022","journal-title":"Bioinformatics"},{"issue":"2","key":"10.1016\/j.crfs.2026.101332_bib16","doi-asserted-by":"crossref","first-page":"416","DOI":"10.1128\/AEM.01174-07","article-title":"Phenotypic and genotypic analysis of amino acid auxotrophy in Lactobacillus helveticus CNRZ 32","volume":"74","author":"Christiansen","year":"2008","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.crfs.2026.101332_bib17","author":"Clarke"},{"key":"10.1016\/j.crfs.2026.101332_bib18","author":"Czjzek"},{"key":"10.1016\/j.crfs.2026.101332_bib19","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1016\/j.appet.2017.03.007","article-title":"Towards a reduced meat diet: mindset and motivation of young vegetarians, low, medium and high meat-eaters","volume":"113","author":"de Boer","year":"2017","journal-title":"Appetite"},{"issue":"2","key":"10.1016\/j.crfs.2026.101332_bib21","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1128\/MMBR.00016-05","article-title":"The continuing story of class IIa bacteriocins","volume":"70","author":"Drider","year":"2006","journal-title":"Microbiol. Mol. Biol. Rev. : MMBR (Microbiol. Mol. Biol. Rev.)"},{"issue":"D1","key":"10.1016\/j.crfs.2026.101332_bib22","doi-asserted-by":"crossref","first-page":"D571","DOI":"10.1093\/nar\/gkab1045","article-title":"The carbohydrate-active enzyme database: functions and literature","volume":"50","author":"Drula","year":"2022","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.crfs.2026.101332_bib23","doi-asserted-by":"crossref","DOI":"10.1016\/j.jclepro.2023.136999","article-title":"Plant-based and cultivated meat in the United States: a review and research agenda through the lens of socio-technical transitions","volume":"405","author":"Due\u00f1as-Ocampo","year":"2023","journal-title":"J. Clean. Prod."},{"key":"10.1016\/j.crfs.2026.101332_bib24","doi-asserted-by":"crossref","first-page":"237","DOI":"10.2754\/avb201382030237","article-title":"Weissella viridescens in meat products - a review","volume":"82","author":"Du\u0161kov\u00e1","year":"2013","journal-title":"Acta Vet."},{"key":"10.1016\/j.crfs.2026.101332_bib25","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2022.829118","article-title":"Raffinose family oligosaccharides: friend or foe for human and plant health?","volume":"13","author":"Elango","year":"2022","journal-title":"Front. Plant Sci."},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib26","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1038\/s41564-020-00834-3","article-title":"Community-led, integrated, reproducible multi-omics with anvi'o","volume":"6","author":"Eren","year":"2021","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.crfs.2026.101332_bib27","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1039\/B603816F","article-title":"Biosynthesis of aminocyclitol-aminoglycoside antibiotics and related compounds","volume":"24","author":"Flatt","year":"2007","journal-title":"Nat. Prod. Rep."},{"key":"10.1016\/j.crfs.2026.101332_bib28","author":"Freiding"},{"key":"10.1016\/j.crfs.2026.101332_bib29","doi-asserted-by":"crossref","first-page":"155","DOI":"10.3389\/fmicb.2015.00155","article-title":"The genus Weissella: taxonomy, ecology and biotechnological potential","volume":"6","author":"Fusco","year":"2015","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.crfs.2026.101332_bib30","author":"Gilbert"},{"key":"10.1016\/j.crfs.2026.101332_bib31","author":"Grimmelt"},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib32","doi-asserted-by":"crossref","DOI":"10.1016\/j.jbc.2023.105578","article-title":"Molecular mechanisms underlying the structural diversity of rhamnose-rich cell wall polysaccharides in lactococci","volume":"300","author":"Gu\u00e9rin","year":"2024","journal-title":"J. Biol. Chem."},{"issue":"6","key":"10.1016\/j.crfs.2026.101332_bib33","doi-asserted-by":"crossref","first-page":"1719","DOI":"10.1016\/j.foodres.2010.05.012","article-title":"Inactivation of food spoilage bacteria by high pressure processing: evaluation with conventional media and PCR\u2013DGGE analysis","volume":"43","author":"Han","year":"2010","journal-title":"Food Res. Int."},{"issue":"12","key":"10.1016\/j.crfs.2026.101332_bib34","doi-asserted-by":"crossref","first-page":"2401","DOI":"10.1016\/j.jand.2021.05.002","article-title":"Nutrient composition of a selection of plant-based ground beef alternative products available in the United States","volume":"121","author":"Harnack","year":"2021","journal-title":"J. Acad. Nutr. Diet."},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib35","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1111\/j.1365-2958.1995.tb02396.x","article-title":"Cleavage of trehalose-phosphate in Bacillus subtilis is catalysed by a phospho-alpha-(1-1)-glucosidase encoded by the treA gene","volume":"16","author":"Helfert","year":"1995","journal-title":"Mol. Microbiol."},{"issue":"12","key":"10.1016\/j.crfs.2026.101332_bib36","doi-asserted-by":"crossref","first-page":"9230","DOI":"10.1111\/1750-3841.17579","article-title":"Nutritional profiling of plant-based meat alternatives and ground beef","volume":"89","author":"Hernandez","year":"2024","journal-title":"J. Food Sci."},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib37","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1051\/lait:2001005","article-title":"Bacteriocins of propionic acid bacteria","volume":"82","author":"Holo","year":"2002","journal-title":"Lait"},{"key":"10.1016\/j.crfs.2026.101332_bib38","article-title":"Prodigal: prokaryotic gene recognition and translation initiation site identification","volume":"119","author":"Hyatt","year":"2010","journal-title":"BMC Bioinf."},{"issue":"7","key":"10.1016\/j.crfs.2026.101332_bib39","doi-asserted-by":"crossref","first-page":"1149","DOI":"10.1007\/s00018-013-1388-z","article-title":"\u03b1-Amylase: an enzyme specificity found in various families of glycoside hydrolases","volume":"71","author":"Jane\u010dek","year":"2014","journal-title":"Cell. Mol. Life Sci."},{"issue":"38","key":"10.1016\/j.crfs.2026.101332_bib40","doi-asserted-by":"crossref","DOI":"10.1128\/genomeA.00915-17","article-title":"Complete genome sequences of Lactobacillus curvatus KG6, L. curvatus MRS6, and Lactobacillus sakei FAM18311, isolated from fermented meat products","volume":"5","author":"Jans","year":"2017","journal-title":"Genome Announc."},{"issue":"7","key":"10.1016\/j.crfs.2026.101332_bib41","doi-asserted-by":"crossref","first-page":"3484","DOI":"10.1002\/ptr.7042","article-title":"Hitting the sweet spot: a systematic review of the bioactivity and health benefits of phenolic glycosides from medicinally used plants","volume":"35","author":"Johnson","year":"2021","journal-title":"Phytother Res."},{"issue":"4","key":"10.1016\/j.crfs.2026.101332_bib42","doi-asserted-by":"crossref","first-page":"726","DOI":"10.1016\/j.jmb.2015.11.006","article-title":"BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences","volume":"428","author":"Kanehisa","year":"2016","journal-title":"J. Mol. Biol."},{"issue":"22","key":"10.1016\/j.crfs.2026.101332_bib43","doi-asserted-by":"crossref","first-page":"5906","DOI":"10.1128\/JB.00777-10","article-title":"An extracellular loop of the mannose phosphotransferase system component IIC is responsible for specific targeting by class IIa bacteriocins","volume":"192","author":"Kjos","year":"2010","journal-title":"J. Bacteriol."},{"issue":"5","key":"10.1016\/j.crfs.2026.101332_bib44","doi-asserted-by":"crossref","first-page":"578","DOI":"10.1289\/ehp.11034","article-title":"Global farm animal production and global warming: impacting and mitigating climate change","volume":"116","author":"Koneswaran","year":"2008","journal-title":"Environ. Health Perspect."},{"issue":"5","key":"10.1016\/j.crfs.2026.101332_bib45","doi-asserted-by":"crossref","first-page":"923","DOI":"10.1080\/10408398.2014.939739","article-title":"Meat analogues: health promising sustainable meat substitutes","volume":"57","author":"Kumar","year":"2017","journal-title":"Crit. Rev. Food Sci. Nutr."},{"key":"10.1016\/j.crfs.2026.101332_bib46","series-title":"Sustainable Meat Production and Processing","first-page":"103","article-title":"Chapter 6 - plant-based Meat analogues","author":"Kyriakopoulou","year":"2019"},{"issue":"3","key":"10.1016\/j.crfs.2026.101332_bib47","doi-asserted-by":"crossref","first-page":"600","DOI":"10.3390\/foods10030600","article-title":"Functionality of ingredients and additives in plant-based meat analogues","volume":"10","author":"Kyriakopoulou","year":"2021","journal-title":"Foods"},{"issue":"W1","key":"10.1016\/j.crfs.2026.101332_bib48","doi-asserted-by":"crossref","first-page":"W293","DOI":"10.1093\/nar\/gkab301","article-title":"Interactive Tree of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation","volume":"49","author":"Letunic","year":"2021","journal-title":"Nucleic Acids Res."},{"issue":"5","key":"10.1016\/j.crfs.2026.101332_bib49","doi-asserted-by":"crossref","first-page":"1307","DOI":"10.1111\/j.1365-2958.2004.04339.x","article-title":"An alternative pathway for reduced folate biosynthesis in bacteria and halophilic archaea","volume":"54","author":"Levin","year":"2004","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.crfs.2026.101332_bib50","doi-asserted-by":"crossref","DOI":"10.1016\/j.lwt.2024.115845","article-title":"Profiling of microbial populations present in ground beef and plant-based meat analogues","volume":"196","author":"Li","year":"2024","journal-title":"Lebensm. Wiss. Technol."},{"key":"10.1016\/j.crfs.2026.101332_bib51","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1186\/1471-2164-11-36","article-title":"The proteolytic system of lactic acid bacteria revisited: a genomic comparison","volume":"11","author":"Liu","year":"2010","journal-title":"BMC Genom."},{"issue":"3","key":"10.1016\/j.crfs.2026.101332_bib52","doi-asserted-by":"crossref","first-page":"529","DOI":"10.1016\/j.fm.2007.11.007","article-title":"Lactobacillus sakei\/curvatus is the prevailing lactic acid bacterium group in spoiled maatjes herring","volume":"25","author":"Lyhs","year":"2008","journal-title":"Food Microbiol."},{"issue":"3","key":"10.1016\/j.crfs.2026.101332_bib53","doi-asserted-by":"crossref","first-page":"467","DOI":"10.1016\/j.meatsci.2010.02.017","article-title":"Identification of lactic acid bacteria involved in the spoilage of pasteurized \u201cfoie gras\u201d products","volume":"85","author":"Matamoros","year":"2010","journal-title":"Meat Sci."},{"key":"10.1016\/j.crfs.2026.101332_bib54","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1038\/s41579-025-01205-7","article-title":"Lactobacilli biology, applications and host interactions","volume":"24","author":"Mej\u00eda-Caballero","year":"2025","journal-title":"Nat. Rev. Microbiol."},{"issue":"14","key":"10.1016\/j.crfs.2026.101332_bib55","doi-asserted-by":"crossref","first-page":"2681","DOI":"10.1007\/s00018-016-2245-7","article-title":"Structure-function relationships of family GH70 glucansucrase and 4,6-\u03b1-glucanotransferase enzymes, and their evolutionary relationships with family GH13 enzymes","volume":"73","author":"Meng","year":"2016","journal-title":"Cell. Mol. Life Sci."},{"key":"10.1016\/j.crfs.2026.101332_bib56","article-title":"A systematic review of natural toxins occurrence in plant commodities used for plant-based meat alternatives production","volume":"158","author":"Mihalache","year":"2022","journal-title":"Food Res. Int."},{"issue":"W1","key":"10.1016\/j.crfs.2026.101332_bib57","doi-asserted-by":"crossref","first-page":"W601","DOI":"10.1093\/nar\/gkad406","article-title":"WebQUAST: online evaluation of genome assemblies","volume":"51","author":"Mikheenko","year":"2023","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.crfs.2026.101332_bib58","series-title":"Weissella viridescens NJ100","year":"2021"},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib59","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1038\/s41589-019-0400-9","article-title":"A computational framework to explore large-scale biosynthetic diversity","volume":"16","author":"Navarro-Mu\u00f1oz","year":"2020","journal-title":"Nat. Chem. Biol."},{"issue":"4","key":"10.1016\/j.crfs.2026.101332_bib60","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1007\/s00438-011-0608-1","article-title":"Comparative genomics of Lactobacillus sakei with emphasis on strains from meat","volume":"285","author":"Nyquist","year":"2011","journal-title":"Mol. Genet. Genom."},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib62","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1039\/C2NP20092A","article-title":"2-Deoxystreptamine-containing aminoglycoside antibiotics: recent advances in the characterization and manipulation of their biosynthetic pathways","volume":"30","author":"Park","year":"2013","journal-title":"Nat. Prod. Rep."},{"key":"10.1016\/j.crfs.2026.101332_bib63","series-title":"Growing at 5X Total Food Sales","article-title":"U.S. plant-based retail market worth $4.5 billion","year":"2025"},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib64","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1186\/s12934-019-1237-3","article-title":"Unravelling the diversity of glycoside hydrolase family 13 \u03b1-amylases from Lactobacillus plantarum WCFS1","volume":"18","author":"Plaza-Vinuesa","year":"2019","journal-title":"Microb. Cell Fact."},{"key":"10.1016\/j.crfs.2026.101332_bib65","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2023.1286661","article-title":"Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios","volume":"14","author":"Poirier","year":"2023","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib66","doi-asserted-by":"crossref","DOI":"10.1002\/cpbi.102","article-title":"Using SPAdes De Novo Assembler","volume":"70","author":"Prjibelski","year":"2020","journal-title":"Curr. Protoc. Bioinform."},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib67","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1038\/s41538-024-00269-8","article-title":"Microbial community structure of plant-based meat alternatives","volume":"8","author":"Roch","year":"2024","journal-title":"npj Science of Food"},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib68","doi-asserted-by":"crossref","first-page":"74","DOI":"10.3390\/foods10010074","article-title":"Growth inhibitory and selective pressure effects of sodium diacetate on the spoilage microbiota of frankfurters stored at 4 \u00b0C and 12 \u00b0C in vacuum","volume":"10","author":"Samelis","year":"2021","journal-title":"Foods"},{"issue":"3","key":"10.1016\/j.crfs.2026.101332_bib69","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1006\/jmbi.1997.1467","article-title":"Crystal structure of \u03b2-glucosidase A from bacillus polymyxa: insights into the catalytic activity in family 1 glycosyl hydrolases11Edited by R. Huber","volume":"275","author":"Sanz-Aparicio","year":"1998","journal-title":"J. Mol. Biol."},{"issue":"7","key":"10.1016\/j.crfs.2026.101332_bib70","doi-asserted-by":"crossref","first-page":"2148","DOI":"10.1074\/jbc.RA119.011147","article-title":"The phosphatidic acid pathway enzyme PlsX plays both catalytic and channeling roles in bacterial phospholipid synthesis","volume":"295","author":"Sastre","year":"2020","journal-title":"J. Biol. Chem."},{"issue":"14","key":"10.1016\/j.crfs.2026.101332_bib71","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.crfs.2026.101332_bib72","doi-asserted-by":"crossref","DOI":"10.1016\/j.resconrec.2022.106831","article-title":"Meat substitutes: resource demands and environmental footprints","volume":"190","author":"Smetana","year":"2023","journal-title":"Resour. Conserv. Recycl."},{"key":"10.1016\/j.crfs.2026.101332_bib73","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.826683","article-title":"Complete genome sequence of Weissella cibaria NH9449 and comprehensive comparative-genomic analysis: genomic diversity and versatility trait revealed","volume":"13","author":"Surachat","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.crfs.2026.101332_bib74","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/j.coisb.2017.07.005","article-title":"Systems biology of lactic acid bacteria: for food and thought","volume":"6","author":"Teusink","year":"2017","journal-title":"Curr. Opin. Syst. Biol."},{"key":"10.1016\/j.crfs.2026.101332_bib76","doi-asserted-by":"crossref","first-page":"128","DOI":"10.3389\/fsufs.2020.00128","article-title":"Plant-based meats, human health, and climate change","volume":"4","author":"Van Vliet","year":"2020","journal-title":"Front. Sustain. Food Syst."},{"key":"10.1016\/j.crfs.2026.101332_bib77","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1186\/1472-6750-13-100","article-title":"Identification of the gene for \u03b2-fructofuranosidase from Ceratocystis moniliformis CMW 10134 and characterization of the enzyme expressed in Saccharomyces cerevisiae","volume":"13","author":"van Wyk","year":"2013","journal-title":"BMC Biotechnol."},{"issue":"2","key":"10.1016\/j.crfs.2026.101332_bib78","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1128\/JB.187.2.601-610.2005","article-title":"Roles of thioredoxin reductase during the aerobic life of Lactococcus lactis","volume":"187","author":"Vido","year":"2005","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.crfs.2026.101332_bib79","author":"Vincent"},{"issue":"11","key":"10.1016\/j.crfs.2026.101332_bib80","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0112963","article-title":"Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement","volume":"9","author":"Walker","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.crfs.2026.101332_bib81","series-title":"Glycoside Hydrolase Family 1","author":"Withers","year":"2012"},{"issue":"1","key":"10.1016\/j.crfs.2026.101332_bib82","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1186\/s13059-019-1891-0","article-title":"Improved metagenomic analysis with Kraken 2","volume":"20","author":"Wood","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.crfs.2026.101332_bib83","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.biochi.2017.06.015","article-title":"Exogenous fatty acid metabolism in bacteria","volume":"141","author":"Yao","year":"2017","journal-title":"Biochimie"},{"issue":"18","key":"10.1016\/j.crfs.2026.101332_bib84","doi-asserted-by":"crossref","first-page":"5172","DOI":"10.1128\/JB.182.18.5172-5179.2000","article-title":"Cloning and characterization of the glucooligosaccharide Catabolic Pathway \u03b2-Glucan glucohydrolase and cellobiose phosphorylase in the marine hyperthermophile Thermotoga neapolitana","volume":"182","author":"Yernool","year":"2000","journal-title":"J. Bacteriol."},{"issue":"W1","key":"10.1016\/j.crfs.2026.101332_bib85","doi-asserted-by":"crossref","first-page":"W95","DOI":"10.1093\/nar\/gky418","article-title":"dbCAN2: a meta server for automated carbohydrate-active enzyme annotation","volume":"46","author":"Zhang","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.crfs.2026.101332_bib86","series-title":"Glycoside Hydrolase Family 31","author":"Zhang","year":"2025"},{"issue":"W1","key":"10.1016\/j.crfs.2026.101332_bib87","doi-asserted-by":"crossref","first-page":"W115","DOI":"10.1093\/nar\/gkad328","article-title":"dbCAN3: automated carbohydrate-active enzyme and substrate annotation","volume":"51","author":"Zheng","year":"2023","journal-title":"Nucleic Acids Res."},{"issue":"D1","key":"10.1016\/j.crfs.2026.101332_bib88","doi-asserted-by":"crossref","first-page":"D871","DOI":"10.1093\/nar\/gkae968","article-title":"Vfdb 2025: an integrated resource for exploring anti-virulence compounds","volume":"53","author":"Zhou","year":"2024","journal-title":"Nucleic Acids Res."}],"container-title":["Current Research in Food Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2665927126000328?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2665927126000328?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,8,4]],"date-time":"2026-08-04T03:58:12Z","timestamp":1785815892000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2665927126000328"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026]]},"references-count":85,"alternative-id":["S2665927126000328"],"URL":"https:\/\/doi.org\/10.1016\/j.crfs.2026.101332","relation":{},"ISSN":["2665-9271"],"issn-type":[{"value":"2665-9271","type":"print"}],"subject":[],"published":{"date-parts":[[2026]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genomic insights into dominant lactic acid bacteria in spoiled plant-based meat analogues","name":"articletitle","label":"Article Title"},{"value":"Current Research in Food Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.crfs.2026.101332","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Authors. Published by Elsevier B.V.","name":"copyright","label":"Copyright"}],"article-number":"101332"}}