{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T19:38:30Z","timestamp":1791920310346,"version":"4.3.4"},"reference-count":92,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,2,28]],"date-time":"2023-02-28T00:00:00Z","timestamp":1677542400000},"content-version":"vor","delay-in-days":392,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2022,2,1]],"date-time":"2022-02-01T00:00:00Z","timestamp":1643673600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Current Biology"],"published-print":{"date-parts":[[2022,2]]},"DOI":"10.1016\/j.cub.2021.12.023","type":"journal-article","created":{"date-parts":[[2022,1,10]],"date-time":"2022-01-10T10:47:32Z","timestamp":1641811652000},"page":"851-860.e7","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":41,"title":["Pleistocene mitogenomes reconstructed from the environmental DNA of permafrost sediments"],"prefix":"10.1016","volume":"32","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1104-4597","authenticated-orcid":false,"given":"Tyler J.","family":"Murchie","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emil","family":"Karpinski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6862-7756","authenticated-orcid":false,"given":"Katherine","family":"Eaton","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2582-2954","authenticated-orcid":false,"given":"Ana T.","family":"Duggan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8850-9420","authenticated-orcid":false,"given":"Sina","family":"Baleka","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Grant","family":"Zazula","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ross D.E.","family":"MacPhee","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Duane","family":"Froese","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0314-4160","authenticated-orcid":false,"given":"Hendrik N.","family":"Poinar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.cub.2021.12.023_bib1","doi-asserted-by":"crossref","first-page":"1094","DOI":"10.1126\/science.1056370","article-title":"The origin and evolution of the woolly mammoth","volume":"294","author":"Lister","year":"2001","journal-title":"Science"},{"key":"10.1016\/j.cub.2021.12.023_bib2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fevo.2016.00042","article-title":"Mammuthus population dynamics in Late Pleistocene North America: divergence, phylogeogrpaphy, and introgression","volume":"4","author":"Enk","year":"2016","journal-title":"Front. Ecol. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib3","series-title":"Paleoecology of Beringia","year":"1982"},{"key":"10.1016\/j.cub.2021.12.023_bib4","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1002\/gj.2633","article-title":"Late Quaternary megafaunal extinctions on the continents: a short review","volume":"50","author":"Stuart","year":"2015","journal-title":"Geol. J."},{"key":"10.1016\/j.cub.2021.12.023_bib5","series-title":"Frozen Fauna of the Mammoth Steppe: The Story of Blue Babe","author":"Guthrie","year":"1990"},{"key":"10.1016\/j.cub.2021.12.023_bib6","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1017\/qua.2020.59","article-title":"Optimizing extraction and targeted capture of ancient environmental DNA for reconstructing past environments using the PalaeoChip Arctic-1.0 bait-set","volume":"99","author":"Murchie","year":"2021","journal-title":"Quat. Res."},{"key":"10.1016\/j.cub.2021.12.023_bib7","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1038\/nature12921","article-title":"Fifty thousand years of Arctic vegetation and megafaunal diet","volume":"506","author":"Willerslev","year":"2014","journal-title":"Nature"},{"key":"10.1016\/j.cub.2021.12.023_bib8","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1126\/science.aam9695","article-title":"Neandertal and Denisovan DNA from Pleistocene sediments","volume":"356","author":"Slon","year":"2017","journal-title":"Science"},{"key":"10.1016\/j.cub.2021.12.023_bib9","doi-asserted-by":"crossref","first-page":"929","DOI":"10.1111\/nph.14199","article-title":"Lake sedimentary DNA accurately records 20th century introductions of exotic conifers in Scotland","volume":"213","author":"Sj\u00f6gren","year":"2017","journal-title":"New Phytol"},{"key":"10.1016\/j.cub.2021.12.023_bib10","doi-asserted-by":"crossref","first-page":"9310","DOI":"10.1073\/pnas.1604903113","article-title":"Timing and causes of mid-Holocene mammoth extinction on St. Paul Island, Alaska","volume":"113","author":"Graham","year":"2016","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2021.12.023_bib11","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1038\/nature19085","article-title":"Postglacial viability and colonization in North America\u2019s ice-free corridor","volume":"537","author":"Pedersen","year":"2016","journal-title":"Nature"},{"key":"10.1016\/j.cub.2021.12.023_bib12","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1186\/1471-2148-11-30","article-title":"Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics","volume":"11","author":"Anderson-Carpenter","year":"2011","journal-title":"BMC Evol. Biol."},{"key":"10.1016\/j.cub.2021.12.023_bib13","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1016\/j.quaint.2017.03.068","article-title":"Molecular identification of paleofeces from Bechan Cave, southeastern Utah, USA","volume":"443","author":"Karpinski","year":"2017","journal-title":"Quat. Int."},{"key":"10.1016\/j.cub.2021.12.023_bib14","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1016\/j.jhevol.2014.10.016","article-title":"Ancient human microbiomes","volume":"79","author":"Warinner","year":"2015","journal-title":"J.\u00a0Hum. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib15","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1126\/science.281.5375.402","article-title":"Molecular coproscopy: dung and diet of the extinct ground sloth Nothrotheriops shastensis","volume":"281","author":"Poinar","year":"1998","journal-title":"Science"},{"key":"10.1016\/j.cub.2021.12.023_bib16","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1016\/j.jhevol.2014.06.018","article-title":"Ancient DNA analysis of dental calculus","volume":"79","author":"Weyrich","year":"2015","journal-title":"J.\u00a0Hum. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib17","doi-asserted-by":"crossref","first-page":"220","DOI":"10.1002\/ajpa.22960","article-title":"Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus","volume":"160","author":"Ozga","year":"2016","journal-title":"Am. J. Phys. Anthropol."},{"key":"10.1016\/j.cub.2021.12.023_bib18","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nature21674","article-title":"Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus","volume":"544","author":"Weyrich","year":"2017","journal-title":"Nature"},{"key":"10.1016\/j.cub.2021.12.023_bib19","doi-asserted-by":"crossref","first-page":"e0195481","DOI":"10.1371\/journal.pone.0195481","article-title":"Ancient DNA from latrines in Northern Europe and the Middle East (500 BC\u20131700 AD) reveals past parasites and diet","volume":"13","author":"S\u00f8e","year":"2018","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2021.12.023_bib20","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1038\/s41586-021-03675-0","article-title":"Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave","volume":"595","author":"Zavala","year":"2021","journal-title":"Nature"},{"key":"10.1016\/j.cub.2021.12.023_bib21","doi-asserted-by":"crossref","first-page":"3564","DOI":"10.1016\/j.cub.2021.06.023","article-title":"Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment","volume":"31","author":"Gelabert","year":"2021","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cub.2021.12.023_bib22","doi-asserted-by":"crossref","first-page":"2728","DOI":"10.1016\/j.cub.2021.04.027","article-title":"Environmental genomics of Late Pleistocene black bears and giant short-faced bears","volume":"31","author":"Pedersen","year":"2021","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cub.2021.12.023_bib23","doi-asserted-by":"crossref","first-page":"7120","DOI":"10.1038\/s41467-021-27439-6","article-title":"Collapse of the mammoth-steppe in central Yukon as revealed by ancient environmental DNA","volume":"12","author":"Murchie","year":"2021","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2021.12.023_bib24","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1130\/GSATG54A.1","article-title":"The Klondike goldfields and Pleistocene environments of Beringia","volume":"19","author":"Froese","year":"2009","journal-title":"GSA Today"},{"key":"10.1016\/j.cub.2021.12.023_bib25","doi-asserted-by":"crossref","first-page":"1682","DOI":"10.1093\/bioinformatics\/btt193","article-title":"mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters","volume":"29","author":"J\u00f3nsson","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2021.12.023_bib40","doi-asserted-by":"crossref","first-page":"710","DOI":"10.1126\/science.1172873","article-title":"The last glacial maximum","volume":"325","author":"Clark","year":"2009","journal-title":"Science"},{"key":"10.1016\/j.cub.2021.12.023_bib69","first-page":"373","article-title":"An outline of the deglaciation of North America with emphasis on central and northern Canada","volume":"2","author":"Dyke","year":"2004","journal-title":"Dev. Quat. Sci."},{"key":"10.1016\/j.cub.2021.12.023_bib70","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0277-3791(01)00118-4","article-title":"Ice sheets and sea level of the Last Glacial Maximum","volume":"21","author":"Clark","year":"2002","journal-title":"Quat. Sci. Rev."},{"key":"10.1016\/j.cub.2021.12.023_bib71","series-title":"Paleodrainage map of Beringia. Yukon Geological Survey, Open File 2019\u20132","author":"Bond","year":"2019"},{"key":"10.1016\/j.cub.2021.12.023_bib27","doi-asserted-by":"crossref","first-page":"44585","DOI":"10.1038\/srep44585","article-title":"The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis","volume":"7","author":"Chang","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.cub.2021.12.023_bib72","doi-asserted-by":"crossref","first-page":"1","DOI":"10.7554\/eLife.29944","article-title":"A new genus of horse from Pleistocene North America","volume":"6","author":"Heintzman","year":"2017","journal-title":"eLife"},{"key":"10.1016\/j.cub.2021.12.023_bib26","doi-asserted-by":"crossref","first-page":"457","DOI":"10.1038\/nature10388","article-title":"Antibiotic resistance is ancient","volume":"477","author":"D\u2019Costa","year":"2011","journal-title":"Nature"},{"key":"10.1016\/j.cub.2021.12.023_bib28","doi-asserted-by":"crossref","first-page":"E2566","DOI":"10.1073\/pnas.1720554115","article-title":"A comprehensive genomic history of extinct and living elephants","volume":"115","author":"Palkopoulou","year":"2018","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2021.12.023_bib29","doi-asserted-by":"crossref","first-page":"794","DOI":"10.1139\/e86-081","article-title":"Stratigraphic, isotopic, and mineralogical evidence for an early Holocene thaw unconformity at Mayo, Yukon Territory","volume":"23","author":"Burn","year":"1986","journal-title":"Can. J. Earth Sci."},{"key":"10.1016\/j.cub.2021.12.023_bib30","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1139\/e00-013","article-title":"Cryostratigraphy of the Klondike \u201cmuck\u201d deposits, west-central Yukon Territory","volume":"37","author":"Kotler","year":"2000","journal-title":"Can. J. Earth Sci."},{"key":"10.1016\/j.cub.2021.12.023_bib31","doi-asserted-by":"crossref","first-page":"1333","DOI":"10.1139\/e17-106","article-title":"On the nature and origin of \u201cmuck\u201d deposits in the Klondike area, Yukon Territory","volume":"34","author":"Fraser","year":"1997","journal-title":"Can. J. Earth Sci."},{"key":"10.1016\/j.cub.2021.12.023_bib32","series-title":"50,000 years of paleoenvironmental change recorded in meteoric waters and coeval paleoecological and cryostratigraphic indicators from the Klondike Goldfields, Yukon, Canada","author":"Mahony","year":"2015"},{"key":"10.1016\/j.cub.2021.12.023_bib33","doi-asserted-by":"crossref","first-page":"2267","DOI":"10.1126\/science.1067814","article-title":"Dynamics of Pleistocene population extinctions in Beringian brown bears","volume":"295","author":"Barnes","year":"2002","journal-title":"Science"},{"key":"10.1016\/j.cub.2021.12.023_bib34","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1046\/j.1365-2540.2000.00674.x","article-title":"Mitochondrial DNA variation, phylogeography and population structure of the Asian elephant","volume":"84","author":"Fernando","year":"2000","journal-title":"Heredity (Edinb)"},{"key":"10.1016\/j.cub.2021.12.023_bib35","doi-asserted-by":"crossref","first-page":"1563","DOI":"10.1038\/s41559-018-0654-8","article-title":"Partial genomic survival of cave bears in living brown bears","volume":"2","author":"Barlow","year":"2018","journal-title":"Nat. Ecol. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib36","doi-asserted-by":"crossref","first-page":"2137","DOI":"10.1016\/S0277-3791(02)00038-0","article-title":"Age and significance of the Late Pleistocene Dawson tephra in eastern Beringia","volume":"21","author":"Froese","year":"2002","journal-title":"Quat. Sci. Rev."},{"key":"10.1016\/j.cub.2021.12.023_bib37","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1016\/j.quascirev.2016.05.026","article-title":"Late Pleistocene and Holocene tephrostratigraphy of interior Alaska and Yukon: key beds and chronologies over the past 30,000 years","volume":"146","author":"Davies","year":"2016","journal-title":"Quat. Sci. Rev."},{"key":"10.1016\/j.cub.2021.12.023_bib38","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1139\/e99-117","article-title":"Dawson tephra: a prominent stratigraphic marker of Late Wisconsinan age in west-central Yukon, Canada","volume":"37","author":"Westgate","year":"2000","journal-title":"Can. J. Earth Sci."},{"key":"10.1016\/j.cub.2021.12.023_bib39","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1016\/j.palaeo.2006.06.005","article-title":"Vegetation buried under Dawson tephra (25,300 14C years BP) and locally diverse Late Pleistocene paleoenvironments of Goldbottom Creek, Yukon, Canada","volume":"242","author":"Zazula","year":"2006","journal-title":"Palaeogeogr. Palaeoclimatol. Palaeoecol."},{"key":"10.1016\/j.cub.2021.12.023_bib41","doi-asserted-by":"crossref","first-page":"220","DOI":"10.1038\/s42003-021-01710-4","article-title":"Environmental palaeogenomic reconstruction of an Ice Age algal population","volume":"4","author":"Lammers","year":"2021","journal-title":"Commun. Biol."},{"key":"10.1016\/j.cub.2021.12.023_bib42","doi-asserted-by":"crossref","first-page":"3457","DOI":"10.1073\/pnas.1620754114","article-title":"Fossil and genomic evidence constrains the timing of bison arrival in North America","volume":"114","author":"Froese","year":"2017","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2021.12.023_bib43","doi-asserted-by":"crossref","first-page":"8057","DOI":"10.1073\/pnas.1601077113","article-title":"Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada","volume":"113","author":"Heintzman","year":"2016","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2021.12.023_bib44","doi-asserted-by":"crossref","first-page":"1561","DOI":"10.1126\/science.1101074","article-title":"Rise and fall of the Beringian steppe bison","volume":"306","author":"Shapiro","year":"2004","journal-title":"Science"},{"key":"10.1016\/j.cub.2021.12.023_bib45","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1016\/S0921-8181(02)00181-9","article-title":"Marine isotope substage 5e and the Eemian interglacial","volume":"36","author":"Shackleton","year":"2003","journal-title":"Glob. Planet. Change"},{"key":"10.1016\/j.cub.2021.12.023_bib46","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1038\/ngeo729","article-title":"Influence of Bering Strait flow and North Atlantic circulation on glacial sea-level changes","volume":"3","author":"Hu","year":"2010","journal-title":"Nat. Geosci."},{"key":"10.1016\/j.cub.2021.12.023_bib47","first-page":"20132167","article-title":"Faunal record identifies Bering isthmus conditions as constraint to end-Pleistocene migration to the New World","volume":"281","author":"Meiri","year":"2013","journal-title":"Proc. Biol. Soc."},{"key":"10.1016\/j.cub.2021.12.023_bib48","doi-asserted-by":"crossref","first-page":"2473","DOI":"10.1016\/j.quascirev.2008.09.011","article-title":"The Bering Land Bridge: a moisture barrier to the dispersal of steppe-tundra biota?","volume":"27","author":"Elias","year":"2008","journal-title":"Quat. Sci. Rev."},{"key":"10.1016\/j.cub.2021.12.023_bib49","doi-asserted-by":"crossref","first-page":"6144","DOI":"10.1111\/mec.15977","article-title":"Ancient horse genomes reveal the timing and extent of dispersals across the Bering Land Bridge","volume":"30","author":"Vershinina","year":"2021","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2021.12.023_bib50","doi-asserted-by":"crossref","first-page":"343","DOI":"10.3389\/fevo.2019.00343","article-title":"What is Equus? Reconciling taxonomy and phylogenetic analyses","volume":"7","author":"Barr\u00f3n-Ortiz","year":"2019","journal-title":"Front. Ecol. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib51","doi-asserted-by":"crossref","first-page":"2341","DOI":"10.1016\/j.quascirev.2011.05.020","article-title":"Pleistocene vertebrates of the Yukon Territory","volume":"30","author":"Harington","year":"2011","journal-title":"Quat. Sci. Rev."},{"key":"10.1016\/j.cub.2021.12.023_bib52","first-page":"1","article-title":"Bluefish Cave I: a Late Pleistocene Eastern Beringian cave deposit in the Northern Yukon","volume":"3","author":"Cinq-Mars","year":"1979","journal-title":"Can. J. Archaeol."},{"key":"10.1016\/j.cub.2021.12.023_bib53","doi-asserted-by":"crossref","first-page":"303","DOI":"10.14430\/arctic1737","article-title":"Late Pleistocene fauna of Lost Chicken Creek, Alaska","volume":"41","author":"Porter","year":"1988","journal-title":"Arctic"},{"key":"10.1016\/j.cub.2021.12.023_bib54","doi-asserted-by":"crossref","first-page":"146","DOI":"10.1038\/s41559-020-01351-6","article-title":"Researchers using environmental DNA must engage ethically with Indigenous communities","volume":"5","author":"Handsley-Davis","year":"2021","journal-title":"Nat. Ecol. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib55","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1111\/j.1502-3885.2010.00181.x","article-title":"Paper II \u2013 dirt, dates and DNA: OSL and radiocarbon chronologies of perennially frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies","volume":"40","author":"Arnold","year":"2011","journal-title":"Boreas"},{"key":"10.1016\/j.cub.2021.12.023_bib56","doi-asserted-by":"crossref","first-page":"982","DOI":"10.1093\/molbev\/msm016","article-title":"Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?","volume":"24","author":"Haile","year":"2007","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib57","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/fevo.2020.00084","article-title":"PIA: more accurate taxonomic assignment of metagenomic data demonstrated on sedaDNA From the North Sea","volume":"8","author":"Cribdon","year":"2020","journal-title":"Front. Ecol. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib58","doi-asserted-by":"crossref","first-page":"3647","DOI":"10.1111\/j.1365-294X.2012.05545.x","article-title":"DNA from soil mirrors plant taxonomic and growth form diversity","volume":"21","author":"Yoccoz","year":"2012","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2021.12.023_bib59","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1111\/fwb.12846","article-title":"Environmental DNA analysis for estimating the abundance and biomass of stream fish","volume":"62","author":"Doi","year":"2017","journal-title":"Freshw. Biol."},{"key":"10.1016\/j.cub.2021.12.023_bib60","doi-asserted-by":"crossref","first-page":"6310","DOI":"10.1093\/nar\/gkx361","article-title":"A new model for ancient DNA decay based on paleogenomic meta-analysis","volume":"45","author":"Kistler","year":"2017","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.cub.2021.12.023_bib61","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1002\/bies.201400160","article-title":"The future of ancient DNA: technical advances and conceptual shifts","volume":"37","author":"Hofreiter","year":"2015","journal-title":"BioEssays"},{"key":"10.1016\/j.cub.2021.12.023_bib62","series-title":"Ancient DNA: Methods and Protocols","first-page":"31","article-title":"Sampling and extraction of ancient DNA from sediments","author":"Epp","year":"2019"},{"key":"10.1016\/j.cub.2021.12.023_bib63","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1002\/jqs.2740","article-title":"Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects","volume":"29","author":"Rawlence","year":"2014","journal-title":"J.\u00a0Quat. Sci."},{"key":"10.1016\/j.cub.2021.12.023_bib64","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1016\/j.gloplacha.2015.02.008","article-title":"Increased precipitation drives mega slump development and destabilization of ice-rich permafrost terrain, northwestern Canada","volume":"129","author":"Kokelj","year":"2015","journal-title":"Glob. Planet. Change"},{"key":"10.1016\/j.cub.2021.12.023_bib65","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1130\/G38626.1","article-title":"Climate-driven thaw of permafrost preserved glacial landscapes, northwestern Canada","volume":"45","author":"Kokelj","year":"2017","journal-title":"Geology"},{"key":"10.1016\/j.cub.2021.12.023_bib66","doi-asserted-by":"crossref","first-page":"5423","DOI":"10.1038\/s41467-018-07663-3","article-title":"Remote sensing quantifies widespread abundance of permafrost region disturbances across the Arctic and subarctic","volume":"9","author":"Nitze","year":"2018","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2021.12.023_bib67","doi-asserted-by":"crossref","first-page":"1329","DOI":"10.1038\/s41467-019-09314-7","article-title":"Extremes of summer climate trigger thousands of thermokarst landslides in a High Arctic environment","volume":"10","author":"Lewkowicz","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2021.12.023_bib68","doi-asserted-by":"crossref","DOI":"10.1088\/1748-9326\/ab12fd","article-title":"Rapid initialization of retrogressive thaw slumps in the Canadian high Arctic and their response to climate and terrain factors","volume":"14","author":"Ward Jones","year":"2019","journal-title":"Environ. Res. Lett."},{"key":"10.1016\/j.cub.2021.12.023_bib83","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1007\/s13353-012-0090-4","article-title":"Tracking of wisent\u2013bison\u2013yak mitochondrial evolution","volume":"53","author":"Zeyland","year":"2012","journal-title":"J.\u00a0Appl. Genet."},{"key":"10.1016\/j.cub.2021.12.023_bib75","doi-asserted-by":"crossref","DOI":"10.1101\/pdb.prot5448","article-title":"Illumina sequencing library preparation for highly multiplexed target capture and sequencing","volume":"2010","author":"Meyer","year":"2010","journal-title":"Cold Spring Harb. Protoc."},{"key":"10.1016\/j.cub.2021.12.023_bib76","doi-asserted-by":"crossref","first-page":"e3","DOI":"10.1093\/nar\/gkr771","article-title":"Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform","volume":"40","author":"Kircher","year":"2012","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.cub.2021.12.023_bib78","doi-asserted-by":"crossref","first-page":"e141","DOI":"10.1093\/nar\/gku699","article-title":"LeeHom: adaptor trimming and merging for Illumina sequencing reads","volume":"42","author":"Renaud","year":"2014","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.cub.2021.12.023_bib84","doi-asserted-by":"crossref","first-page":"1.23.1","DOI":"10.1002\/0471250953.bi0123s44","article-title":"MtDNA variation and analysis using Mitomap and Mitomaster","volume":"44","author":"Lott","year":"2013","journal-title":"Curr. Protoc. Bioinformatics"},{"key":"10.1016\/j.cub.2021.12.023_bib81","doi-asserted-by":"crossref","first-page":"e1004957","DOI":"10.1371\/journal.pcbi.1004957","article-title":"MEGAN community edition\u2014interactive exploration and analysis of large-scale microbiome sequencing data","volume":"12","author":"Huson","year":"2016","journal-title":"PLoS Comput. Biol."},{"key":"10.1016\/j.cub.2021.12.023_bib82","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1101\/gr.5969107","article-title":"MEGAN analysis of metagenomic data","volume":"17","author":"Huson","year":"2007","journal-title":"Genome Res"},{"key":"10.1016\/j.cub.2021.12.023_bib89","doi-asserted-by":"crossref","first-page":"1990","DOI":"10.21105\/joss.01990","article-title":"NCBImeta: efficient and comprehensive metadata retrieval from NCBI databases","volume":"5","author":"Eaton","year":"2020","journal-title":"J.\u00a0Open Source Softw."},{"key":"10.1016\/j.cub.2021.12.023_bib85","doi-asserted-by":"crossref","first-page":"W58","DOI":"10.1093\/nar\/gkw233","article-title":"HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing","volume":"44","author":"Weissensteiner","year":"2016","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.cub.2021.12.023_bib86","doi-asserted-by":"crossref","first-page":"915","DOI":"10.1016\/j.ajhg.2012.04.003","article-title":"Mitochondrial DNA signals of late glacial recolonization of Europe from near eastern refugia","volume":"90","author":"Pala","year":"2012","journal-title":"Am. J. Hum. Genet."},{"key":"10.1016\/j.cub.2021.12.023_bib90","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1093\/molbev\/msu300","article-title":"IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies","volume":"32","author":"Nguyen","year":"2015","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2021.12.023_bib79","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows-Wheeler transform","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2021.12.023_bib73","series-title":"A metagenomic analysis of ancient sedimentary DNA across the Pleistocene-Holocene transition","author":"Sadoway","year":"2014"},{"key":"10.1016\/j.cub.2021.12.023_bib74","doi-asserted-by":"crossref","first-page":"15758","DOI":"10.1073\/pnas.1314445110","article-title":"Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments","volume":"110","author":"Dabney","year":"2013","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2021.12.023_bib77","doi-asserted-by":"crossref","first-page":"240","DOI":"10.1002\/ajpa.23820","article-title":"Genetic resiliency and the Black Death: no apparent loss of mitogenomic diversity due to the Black Death in medieval London and Denmark","volume":"169","author":"Klunk","year":"2019","journal-title":"Am. J. Phys. Anthropol."},{"key":"10.1016\/j.cub.2021.12.023_bib80","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J.\u00a0Mol. Biol."},{"key":"10.1016\/j.cub.2021.12.023_bib87","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1038\/s41586-021-03224-9","article-title":"Million-year-old DNA sheds light on the genomic history of mammoths","volume":"591","author":"van der Valk","year":"2021","journal-title":"Nature"},{"key":"10.1016\/j.cub.2021.12.023_bib88","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.cub.2021.12.023_bib91","doi-asserted-by":"crossref","first-page":"vey016","DOI":"10.1093\/ve\/vey016","article-title":"Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10","volume":"4","author":"Suchard","year":"2018","journal-title":"Virus Evol"},{"key":"10.1016\/j.cub.2021.12.023_bib92","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1093\/sysbio\/syy032","article-title":"Posterior summarization in Bayesian phylogenetics using Tracer 1.7","volume":"67","author":"Rambaut","year":"2018","journal-title":"Syst. Biol."}],"container-title":["Current Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982221016997?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982221016997?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,18]],"date-time":"2025-10-18T10:00:44Z","timestamp":1760781644000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0960982221016997"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,2]]},"references-count":92,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2022,2]]}},"alternative-id":["S0960982221016997"],"URL":"https:\/\/doi.org\/10.1016\/j.cub.2021.12.023","relation":{},"ISSN":["0960-9822"],"issn-type":[{"value":"0960-9822","type":"print"}],"subject":[],"published":{"date-parts":[[2022,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Pleistocene mitogenomes reconstructed from the environmental DNA of permafrost sediments","name":"articletitle","label":"Article Title"},{"value":"Current Biology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.cub.2021.12.023","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2021 Elsevier Inc.","name":"copyright","label":"Copyright"}]}}