{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,23]],"date-time":"2026-08-23T15:38:34Z","timestamp":1787499514503,"version":"build-2736575974"},"reference-count":148,"publisher":"Elsevier BV","issue":"1","license":[{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,1,8]],"date-time":"2025-01-08T00:00:00Z","timestamp":1736294400000},"content-version":"vor","delay-in-days":373,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100001823","name":"Ministry of Education Youth and Sports of the Czech Republic","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001823","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004359","name":"Vetenskapsr\u00e5det","doi-asserted-by":"publisher","award":["2012-10-24"],"award-info":[{"award-number":["2012-10-24"]}],"id":[{"id":"10.13039\/501100004359","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004359","name":"Vetenskapsr\u00e5det","doi-asserted-by":"publisher","award":["90254"],"award-info":[{"award-number":["90254"]}],"id":[{"id":"10.13039\/501100004359","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001824","name":"Czech Science Foundation","doi-asserted-by":"publisher","award":["23-06881S"],"award-info":[{"award-number":["23-06881S"]}],"id":[{"id":"10.13039\/501100001824","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007397","name":"Charles University","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007397","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007543","name":"Grantov\u00e1 Agentura, Univerzita Karlova","doi-asserted-by":"publisher","award":["1498119"],"award-info":[{"award-number":["1498119"]}],"id":[{"id":"10.13039\/100007543","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Current Biology"],"published-print":{"date-parts":[[2024,1]]},"DOI":"10.1016\/j.cub.2023.11.046","type":"journal-article","created":{"date-parts":[[2023,12,15]],"date-time":"2023-12-15T11:21:38Z","timestamp":1702639298000},"page":"92-105.e6","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":12,"title":["Rapid diversification of a free-living protist is driven by adaptation to climate and habitat"],"prefix":"10.1016","volume":"34","author":[{"given":"Pavel","family":"\u0160kaloud","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Iva","family":"Jadrn\u00e1","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Petr","family":"Dvo\u0159\u00e1k","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zuzana","family":"\u0160kvorov\u00e1","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martin","family":"Pusztai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dora","family":"\u010certnerov\u00e1","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Helena","family":"Bestov\u00e1","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Karin","family":"Rengefors","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.cub.2023.11.046_bib1","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.1001127","article-title":"How many species are there on Earth and in the ocean?","volume":"9","author":"Mora","year":"2011","journal-title":"PLoS Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib2","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1016\/j.tree.2019.08.008","article-title":"The new tree of Eukaryotes","volume":"35","author":"Burki","year":"2020","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib3","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1016\/j.tree.2011.11.010","article-title":"Sequencing our way towards understanding global eukaryotic biodiversity","volume":"27","author":"Bik","year":"2012","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib4","series-title":"Symbiosis: An Introduction to Biological Associations","author":"Ahmadjian","year":"2000"},{"key":"10.1016\/j.cub.2023.11.046_bib5","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1038\/ismej.2008.101","article-title":"Protists are microbes too: a perspective","volume":"3","author":"Caron","year":"2009","journal-title":"ISME J."},{"key":"10.1016\/j.cub.2023.11.046_bib6","series-title":"Aquatic Microbial Ecology \u2014 A Textbook for Students in Environmental Sciences","author":"Sorokin","year":"1999"},{"key":"10.1016\/j.cub.2023.11.046_bib7","doi-asserted-by":"crossref","first-page":"168","DOI":"10.4319\/lo.2004.49.1.0168","article-title":"Assessing the dynamics and ecology of marine picophytoplankton: the importance of the eukaryotic component","volume":"49","author":"Worden","year":"2004","journal-title":"Limnol. Oceanogr."},{"key":"10.1016\/j.cub.2023.11.046_bib8","series-title":"Speciation","author":"Coyne","year":"2004"},{"key":"10.1016\/j.cub.2023.11.046_bib9","first-page":"165","article-title":"Genetic diversity and evolution in eukaryotic phytoplankton: revelations from population genetic studies","volume":"39","author":"Rengefors","year":"2017","journal-title":"J.\u00a0Plankton Res."},{"key":"10.1016\/j.cub.2023.11.046_bib10","first-page":"206","article-title":"Heterothallic sexuality and density dependent encystment in the chrysophycean alga Synura petersenii Korsh.","volume":"22","author":"Sandgren","year":"1986","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib11","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1046\/j.1529-8817.1999.3510152.x","article-title":"Sexuality, incompatibility, size variation, and preferential polyandry in natural populations and clones of Sellaphora pupula (Bacillariophyceae)","volume":"35","author":"Mann","year":"1999","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib12","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1016\/j.hal.2008.05.004","article-title":"Sexual and vegetative phases in the planktonic diatom Pseudo-Nitzschia multistriata","volume":"8","author":"D\u2019Alelio","year":"2009","journal-title":"Harmful Algae"},{"key":"10.1016\/j.cub.2023.11.046_bib13","series-title":"Systematics and the Origin of Species from the Viewpoint of a Zoologist","author":"Mayr","year":"1942"},{"key":"10.1016\/j.cub.2023.11.046_bib14","doi-asserted-by":"crossref","first-page":"997","DOI":"10.1111\/j.1420-9101.2010.01970.x","article-title":"Clonal erosion and genetic drift in cyclical parthenogens - the interplay between neutral and selective processes","volume":"23","author":"Vanoverbeke","year":"2010","journal-title":"J.\u00a0Evol. Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib15","doi-asserted-by":"crossref","first-page":"4433","DOI":"10.1111\/mec.13336","article-title":"Genotypic diversity and differentiation among populations of two benthic freshwater diatoms as revealed by microsatellites","volume":"24","author":"Vanormelingen","year":"2015","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib16","doi-asserted-by":"crossref","first-page":"375","DOI":"10.2307\/3544855","article-title":"There are more small than large species?","volume":"68","author":"Fenchel","year":"1993","journal-title":"Oikos"},{"key":"10.1016\/j.cub.2023.11.046_bib17","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1126\/science.1070710","article-title":"Global dispersal of free-living microbial eukaryote species","volume":"296","author":"Finlay","year":"2002","journal-title":"Science"},{"key":"10.1016\/j.cub.2023.11.046_bib18","doi-asserted-by":"crossref","first-page":"1965","DOI":"10.1098\/rstb.2006.1924","article-title":"The diversity of microbes: resurgence of the phenotype","volume":"361","author":"Fenchel","year":"2006","journal-title":"Philos. Trans. R. Soc. Lond. B Biol. Sci."},{"key":"10.1016\/j.cub.2023.11.046_bib19","doi-asserted-by":"crossref","first-page":"12952","DOI":"10.1073\/pnas.1001380107","article-title":"Limits to gene flow in a cosmopolitan marine planktonic diatom","volume":"107","author":"Casteleyn","year":"2010","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2023.11.046_bib20","doi-asserted-by":"crossref","first-page":"3200","DOI":"10.1111\/j.1365-294X.2012.05596.x","article-title":"Polar lakes may act as ecological islands to aquatic protists","volume":"21","author":"Rengefors","year":"2012","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib21","doi-asserted-by":"crossref","first-page":"4913","DOI":"10.1111\/mec.15554","article-title":"Adaptive divergence across Southern Ocean gradients in the pelagic diatom Fragilariopsis kerguelensis","volume":"29","author":"Postel","year":"2020","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib22","doi-asserted-by":"crossref","first-page":"3500","DOI":"10.1111\/mec.15952","article-title":"Genomic variation of an endosymbiotic dinoflagellate (Symbiodinium \u2018fitti\u2019) among closely related coral hosts","volume":"30","author":"Reich","year":"2021","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib23","doi-asserted-by":"crossref","first-page":"1249","DOI":"10.4319\/lo.2006.51.3.1249","article-title":"Spring bloom development, genetic variation, and population succession in the planktonic diatom Ditylum brightwellii","volume":"51","author":"Rynearson","year":"2006","journal-title":"Limnol. Oceanogr."},{"key":"10.1016\/j.cub.2023.11.046_bib24","doi-asserted-by":"crossref","first-page":"2395","DOI":"10.1111\/j.1462-2920.2012.02769.x","article-title":"Genetic diversity within and genetic differentiation between blooms of a microalgal species","volume":"14","author":"Lebret","year":"2012","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.cub.2023.11.046_bib25","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1016\/j.tig.2012.03.009","article-title":"The genomics of speciation-with-gene-flow","volume":"28","author":"Feder","year":"2012","journal-title":"Trends Genet."},{"key":"10.1016\/j.cub.2023.11.046_bib26","doi-asserted-by":"crossref","first-page":"1817","DOI":"10.1101\/gr.159426.113","article-title":"Genome-wide evidence for speciation with gene flow in Heliconius butterflies","volume":"23","author":"Martin","year":"2013","journal-title":"Genome Res."},{"key":"10.1016\/j.cub.2023.11.046_bib27","doi-asserted-by":"crossref","first-page":"7657","DOI":"10.1073\/pnas.0402401101","article-title":"Molecular evidence links cryptic diversification in polar planktonic protists to Quaternary climate dynamics","volume":"101","author":"Darling","year":"2004","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2023.11.046_bib28","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1890\/ES11-00157.1","article-title":"Significant habitat effects influence protist fitness: evidence for local adaptation from acidic mining lakes","volume":"2","author":"Weisse","year":"2011","journal-title":"Ecosphere"},{"key":"10.1016\/j.cub.2023.11.046_bib29","doi-asserted-by":"crossref","first-page":"549","DOI":"10.1007\/s00248-006-9088-y","article-title":"Phenotypically different microalgal morphospecies with identical ribosomal DNA: a case of rapid adaptive evolution?","volume":"53","author":"Logares","year":"2007","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib30","doi-asserted-by":"crossref","first-page":"1084","DOI":"10.1111\/mec.15011","article-title":"Speciation in protists: spatial and ecological divergence processes cause rapid species diversification in a freshwater chrysophyte","volume":"28","author":"\u0160kaloud","year":"2019","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib31","doi-asserted-by":"crossref","first-page":"1077","DOI":"10.1093\/aob\/mcaa133","article-title":"Substantial intraspecific genome size variation in golden-brown algae and its phenotypic consequences","volume":"126","author":"\u010certnerov\u00e1","year":"2020","journal-title":"Ann. Bot."},{"key":"10.1016\/j.cub.2023.11.046_bib32","doi-asserted-by":"crossref","first-page":"574","DOI":"10.1111\/jpy.12978","article-title":"Comparing morphological and molecular estimates of species diversity in the freshwater genus Synura (stramenopiles): a model for understanding diversity of Eukaryotic microorganisms","volume":"56","author":"\u0160kaloud","year":"2020","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib33","series-title":"Chrysophyte Algae: Ecology, Phylogeny, and Development","first-page":"181","article-title":"Chrysophyte blooms in the plankton and neuston of marine and freshwater systems","author":"Nicholls","year":"2012"},{"key":"10.1016\/j.cub.2023.11.046_bib34","series-title":"The Ecology of Freshwater Phytoplankton","author":"Reynolds","year":"1984"},{"key":"10.1016\/j.cub.2023.11.046_bib35","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1093\/plankt\/fbl054","article-title":"Phosphorus gain by bacterivory promotes the mixotrophic flagellate Dinobryon spp. during re-oligotrophication","volume":"29","author":"Kamjunke","year":"2007","journal-title":"J.\u00a0Plankton Res."},{"key":"10.1016\/j.cub.2023.11.046_bib36","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1127\/1438-9134\/2010\/0136-0213","article-title":"Light and bacteria: substitutable energy sources for chrysophyte blooms?","volume":"136","author":"Watson","year":"2010","journal-title":"Nova Hedwigia, Beih."},{"key":"10.1016\/j.cub.2023.11.046_bib37","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1086\/282171","article-title":"The paradox of the plankton","volume":"95","author":"Hutchinson","year":"1961","journal-title":"Am. Nat."},{"key":"10.1016\/j.cub.2023.11.046_bib38","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1127\/archiv-hydrobiol\/106\/1986\/433","article-title":"The PEG-model of seasonal succession of planktonic events in fresh waters","volume":"106","author":"Sommer","year":"1986","journal-title":"Arch. Hydrobiol."},{"key":"10.1016\/j.cub.2023.11.046_bib39","doi-asserted-by":"crossref","first-page":"487","DOI":"10.4319\/lo.1997.42.3.0487","article-title":"Patterns in phytoplankton taxonomic composition across temperate lakes of differing nutrient status","volume":"42","author":"Watson","year":"1997","journal-title":"Limnol. Oceanogr."},{"key":"10.1016\/j.cub.2023.11.046_bib40","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1007\/s10750-009-0021-5","article-title":"Convergence and divergence in organization of phytoplankton communities under various regimes of physical and biological control","volume":"639","author":"Padis\u00e1k","year":"2010","journal-title":"Hydrobiologia"},{"key":"10.1016\/j.cub.2023.11.046_bib41","series-title":"Chrysophyte Algae: Ecology, Phylogeny, and Development","first-page":"232","article-title":"The distribution of chrysophytes along environmental gradients: their use as biological indicators","author":"Siver","year":"2012"},{"key":"10.1016\/j.cub.2023.11.046_bib42","series-title":"Handbook of the Protists","first-page":"331","article-title":"Chrysophyta","author":"Kristiansen","year":"2017"},{"key":"10.1016\/j.cub.2023.11.046_bib43","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1097\/00010694-196109000-00005","article-title":"Relationships between ph values of organic soils and availabilities of 12 plant nutrients","volume":"92","author":"Lucas","year":"1961","journal-title":"Soil Sci."},{"key":"10.1016\/j.cub.2023.11.046_bib44","first-page":"157","article-title":"The influence of environmental factors on the distribution of freshwater algae: an experimental study: II. The role of pH and the carbon dioxide-bicarbonate system","volume":"61","author":"Moss","year":"1973","journal-title":"J.\u00a0Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib45","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1007\/BF00163517","article-title":"Phytoplankton community of an acidified, heavy metal-contaminated lake near Sudbury, Ontario: 1973-1977","volume":"11","author":"Yan","year":"1979","journal-title":"Water Air Soil Pollut."},{"key":"10.1016\/j.cub.2023.11.046_bib46","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1111\/j.1469-185X.1970.tb01629.x","article-title":"Exogenous inorganic carbon sources in plant photosynthesis","volume":"45","author":"Raven","year":"1970","journal-title":"Biol. Rev."},{"key":"10.1016\/j.cub.2023.11.046_bib47","doi-asserted-by":"crossref","first-page":"1052","DOI":"10.1111\/j.1529-8817.2009.00734.x","article-title":"Inorganic carbon acquisition by chrysophytes(1)","volume":"45","author":"Maberly","year":"2009","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib48","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1016\/j.gloplacha.2013.09.014","article-title":"A hypothesis linking chrysophyte microfossils to lake carbon dynamics on ecological and evolutionary time scales","volume":"111","author":"Wolfe","year":"2013","journal-title":"Glob. Planet Change"},{"key":"10.1016\/j.cub.2023.11.046_bib49","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0003376","article-title":"Rapid SNP discovery and genetic mapping using sequenced RAD markers","volume":"3","author":"Baird","year":"2008","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2023.11.046_bib50","doi-asserted-by":"crossref","first-page":"912","DOI":"10.1111\/mec.15787","article-title":"Genome-wide single nucleotide polymorphism markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species","volume":"30","author":"Rengefors","year":"2021","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib51","doi-asserted-by":"crossref","first-page":"3956","DOI":"10.1002\/ece3.7290","article-title":"Cell size, genome size, and maximum growth rate are near-independent dimensions of ecological variation across bacteria and archaea","volume":"11","author":"Westoby","year":"2021","journal-title":"Ecol. Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib52","first-page":"135","article-title":"Rates of growth, respiration and photosynthesis of unicellular algae as related to cell size\u00a0\u2013 a review","volume":"12","author":"Banse","year":"1976","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib53","first-page":"59","article-title":"Genome and cell size variation across algal taxa","volume":"6","author":"Raven","year":"2019","journal-title":"Perspect. Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib54","doi-asserted-by":"crossref","first-page":"1004","DOI":"10.1101\/gr.212522.116","article-title":"Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin\u2019s finches","volume":"27","author":"Han","year":"2017","journal-title":"Genome Res."},{"key":"10.1016\/j.cub.2023.11.046_bib55","doi-asserted-by":"crossref","first-page":"1493","DOI":"10.1126\/science.aac9927","article-title":"Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake","volume":"350","author":"Malinsky","year":"2015","journal-title":"Science"},{"key":"10.1016\/j.cub.2023.11.046_bib56","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1016\/j.tree.2020.07.015","article-title":"A Darwinian laboratory of multiple contact zones","volume":"35","author":"Johannesson","year":"2020","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib57","doi-asserted-by":"crossref","first-page":"2871","DOI":"10.1111\/mec.13208","article-title":"Local adaptation and oceanographic connectivity patterns explain genetic differentiation of a marine diatom across the North Sea-Baltic Sea salinity gradient","volume":"24","author":"Sj\u00f6qvist","year":"2015","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib58","doi-asserted-by":"crossref","first-page":"483","DOI":"10.1046\/j.1365-2427.2002.00829.x","article-title":"Dispersal of aquatic organisms by waterbirds: a review of past research and priorities for future studies","volume":"47","author":"Figuerola","year":"2002","journal-title":"Freshwater Biology"},{"key":"10.1016\/j.cub.2023.11.046_bib59","doi-asserted-by":"crossref","first-page":"432","DOI":"10.1016\/S1360-1385(98)01327-2","article-title":"The effect of quaternary climatic changes on plant distribution and evolution","volume":"3","author":"Comes","year":"1998","journal-title":"Trends in Plant Science"},{"key":"10.1016\/j.cub.2023.11.046_bib60","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1038\/35016000","article-title":"The genetic legacy of the quaternary ice ages","volume":"405","author":"Hewitt","year":"2000","journal-title":"Nature"},{"key":"10.1016\/j.cub.2023.11.046_bib61","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1080\/17550874.2021.2012849","article-title":"Plant speciation in the quaternary","volume":"14","author":"Kadereit","year":"2021","journal-title":"Plant Ecology\u00a0& Diversity"},{"key":"10.1016\/j.cub.2023.11.046_bib62","doi-asserted-by":"crossref","first-page":"1205","DOI":"10.1111\/brv.12698","article-title":"Speciation across the Tree of Life","volume":"96","author":"Hern\u00e1ndez-Hern\u00e1ndez","year":"2021","journal-title":"Biol. Rev. Camb. Philos. Soc."},{"key":"10.1016\/j.cub.2023.11.046_bib63","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1016\/j.protis.2009.02.001","article-title":"Highly differentiated populations of the freshwater diatom Sellaphora capitata suggest limited dispersal and opportunities for allopatric speciation","volume":"160","author":"Evans","year":"2009","journal-title":"Protist"},{"key":"10.1016\/j.cub.2023.11.046_bib64","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1017\/S0094837300007806","article-title":"Speciation in pelagic protista and its study in the planktonic microfossil record: a review","volume":"9","author":"Lazarus","year":"1983","journal-title":"Paleobiology"},{"key":"10.1016\/j.cub.2023.11.046_bib65","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2180-13-150","article-title":"Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection","volume":"13","author":"Stock","year":"2013","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.cub.2023.11.046_bib66","doi-asserted-by":"crossref","first-page":"1821","DOI":"10.1038\/ismej.2014.267","article-title":"Recent radiation in a marine and freshwater dinoflagellate species flock","volume":"9","author":"Annenkova","year":"2015","journal-title":"ISME J."},{"key":"10.1016\/j.cub.2023.11.046_bib67","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2148-12-54","article-title":"Ecological partitioning and diversity in tropical planktonic foraminifera","volume":"12","author":"Seears","year":"2012","journal-title":"BMC Evol. Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib68","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1016\/j.ympev.2014.05.021","article-title":"Uncovering sibling species in Radiolaria: evidence for ecological partitioning in a marine planktonic protist","volume":"78","author":"Ishitani","year":"2014","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib69","doi-asserted-by":"crossref","first-page":"2433","DOI":"10.1111\/j.1462-2920.2008.01673.x","article-title":"Ecological niche partitioning in the picoplanktonic green alga Micromonas pusilla: evidence from environmental surveys using phylogenetic probes","volume":"10","author":"Foulon","year":"2008","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.cub.2023.11.046_bib70","doi-asserted-by":"crossref","first-page":"4063","DOI":"10.1111\/j.1365-294X.2012.05686.x","article-title":"Vertical niche partitioning between cryptic sibling species of a cosmopolitan marine planktonic protist","volume":"21","author":"Weiner","year":"2012","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib71","doi-asserted-by":"crossref","first-page":"347","DOI":"10.2216\/15-110.1","article-title":"Influence of substrate and pH on the diversity of the aeroterrestrial alga Klebsormidium (Klebsormidiales, Streptophyta): a potentially important factor for sympatric speciation","volume":"55","author":"Ry\u0161\u00e1nek","year":"2016","journal-title":"Phycologia"},{"key":"10.1016\/j.cub.2023.11.046_bib72","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1111\/jeu.12040","article-title":"Ecological differentiation of cryptic species within an asexual protist morphospecies: a case study of filamentous green alga Klebsormidium (Streptophyta)","volume":"60","author":"\u0160kaloud","year":"2013","journal-title":"J.\u00a0Eukaryot. Microbiol."},{"key":"10.1016\/j.cub.2023.11.046_bib73","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1371\/journal.pone.0012759","article-title":"A molecular genetic timescale for the diversification of autotrophic stramenopiles (Ochrophyta): substantive underestimation of putative fossil ages","volume":"5","author":"Brown","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2023.11.046_bib74","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1016\/j.hal.2016.02.010","article-title":"New scenario for speciation in the benthic dinoflagellate genus Coolia (Dinophyceae)","volume":"55","author":"Leaw","year":"2016","journal-title":"Harmful Algae"},{"key":"10.1016\/j.cub.2023.11.046_bib75","doi-asserted-by":"crossref","first-page":"7163","DOI":"10.1073\/pnas.1132069100","article-title":"Pseudo-cryptic speciation in coccolithophores","volume":"100","author":"S\u00e1ez","year":"2003","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2023.11.046_bib76","series-title":"The Ecology of Phytoplankton","author":"Reynolds","year":"2006"},{"key":"10.1016\/j.cub.2023.11.046_bib77","doi-asserted-by":"crossref","first-page":"2248","DOI":"10.1126\/science.1061967","article-title":"Effects of size and temperature on metabolic rate","volume":"293","author":"Gillooly","year":"2001","journal-title":"Science"},{"key":"10.1016\/j.cub.2023.11.046_bib78","doi-asserted-by":"crossref","DOI":"10.3897\/mbmg.2.21519","article-title":"Geographic distance and mountain ranges structure freshwater protist communities on a European scal\u0435","volume":"2","author":"Boenigk","year":"2018","journal-title":"Metabarcoding Metagenom."},{"key":"10.1016\/j.cub.2023.11.046_bib79","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1139\/er-2017-0046","article-title":"Alpine limnology of the Rocky Mountains of Canada and the USA in the context of environmental change","volume":"26","author":"Redmond","year":"2018","journal-title":"Environ. Rev."},{"key":"10.1016\/j.cub.2023.11.046_bib80","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1146\/annurev-ecolsys-110411-160251","article-title":"Beyond the plankton ecology group (PEG) model: mechanisms driving plankton succession","volume":"43","author":"Sommer","year":"2012","journal-title":"Annu. Rev. Ecol. Evol. Syst."},{"key":"10.1016\/j.cub.2023.11.046_bib81","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1657\/1523-0430(2005)037[0337:PAEACA]2.0.CO;2","article-title":"Planktonic and epipelic algal communities and their relationship to physical and chemical variables in alpine ponds in Banff National Park, Canada","volume":"37","author":"McMaster","year":"2005","journal-title":"Arct. Antarct. Alp. Res."},{"key":"10.1016\/j.cub.2023.11.046_bib82","doi-asserted-by":"crossref","first-page":"451","DOI":"10.1111\/j.1365-2427.2011.02711.x","article-title":"Biogeographic patterns in scaled chrysophytes from the east coast of North America","volume":"57","author":"Siver","year":"2012","journal-title":"Freshw. Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib83","series-title":"Golden Algae: A Biology of Chrysophytes","author":"Kristiansen","year":"2005"},{"key":"10.1016\/j.cub.2023.11.046_bib84","doi-asserted-by":"crossref","first-page":"1930","DOI":"10.2134\/jeq2008.0113","article-title":"Climate change effects on runoff, catchment phosphorus loading and lake ecological state, and potential adaptations","volume":"38","author":"Jeppesen","year":"2009","journal-title":"J.\u00a0Environ. Qual."},{"key":"10.1016\/j.cub.2023.11.046_bib85","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s10750-010-0547-6","article-title":"Climate change effects on nitrogen loading from cultivated catchments in Europe: implications for nitrogen retention, ecological state of lakes and adaptation","volume":"663","author":"Jeppesen","year":"2011","journal-title":"Hydrobiologia"},{"key":"10.1016\/j.cub.2023.11.046_bib86","first-page":"409","article-title":"Effects of an extreme precipitation event on water chemistry and phytoplankton in the Swedish Lake M\u00e4laren","volume":"9","author":"Weyhenmeyer","year":"2004","journal-title":"Boreal Environ. Res."},{"key":"10.1016\/j.cub.2023.11.046_bib87","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1016\/j.ecss.2015.04.004","article-title":"Precipitation as a driver of phytoplankton ecology in coastal waters: a climatic perspective","volume":"162","author":"Thompson","year":"2015","journal-title":"Estuar. Coast. Shelf Sci."},{"key":"10.1016\/j.cub.2023.11.046_bib88","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1016\/S1146-609X(02)01145-1","article-title":"The monopolization hypothesis and the dispersal-gene flow paradox in aquatic organisms","volume":"23","author":"De Meester","year":"2002","journal-title":"Acta Oecol."},{"key":"10.1016\/j.cub.2023.11.046_bib89","doi-asserted-by":"crossref","DOI":"10.1038\/s41559-016-0001","article-title":"Tipping points in the dynamics of speciation","volume":"1","author":"Nosil","year":"2017","journal-title":"Nat. Ecol. Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib90","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1007\/s10531-007-9249-4","article-title":"Distribution and diversity of aquatic protists: an evolutionary and ecological perspective","volume":"17","author":"Weisse","year":"2008","journal-title":"Biodivers. Conserv."},{"key":"10.1016\/j.cub.2023.11.046_bib91","doi-asserted-by":"crossref","first-page":"807","DOI":"10.1038\/nrg3522","article-title":"Ecological genomics of local adaptation","volume":"14","author":"Savolainen","year":"2013","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.cub.2023.11.046_bib92","doi-asserted-by":"crossref","DOI":"10.1038\/s41467-019-12169-7","article-title":"Repeated species radiations in the recent evolution of the key marine phytoplankton lineage Gephyrocapsa","volume":"10","author":"Bendif","year":"2019","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2023.11.046_bib93","series-title":"An Introduction to Population Ecology","author":"Hutchinson","year":"1978"},{"key":"10.1016\/j.cub.2023.11.046_bib94","doi-asserted-by":"crossref","first-page":"2243","DOI":"10.1111\/1462-2920.14992","article-title":"Factors shaping community patterns of protists and bacteria on a European scale","volume":"22","author":"Bock","year":"2020","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.cub.2023.11.046_bib95","doi-asserted-by":"crossref","DOI":"10.1016\/j.algal.2022.102707","article-title":"Alternating nuclear DNA content in chrysophytes provides evidence of their isomorphic haploid-diploid life cycle","volume":"64","author":"\u010certnerov\u00e1","year":"2022","journal-title":"Algal Res."},{"key":"10.1016\/j.cub.2023.11.046_bib96","article-title":"DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta)","volume":"9","author":"Poul\u00ed\u010dkov\u00e1","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2023.11.046_bib97","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1111\/j.1529-8817.1987.tb04134.x","article-title":"A polyploid species complex in Spirogyra maxima (Chlorophyta, Zygnemataceae), a species with large chromosomes 1","volume":"23","author":"Hoshaw","year":"1987","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib98","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1111\/j.1529-8817.2008.00476.x","article-title":"Inter- and intraspecific relationships between nuclear DNA content and cell size in selected members of the centric diatom genus Thalassiosira (Bacillariophyceae)(1)","volume":"44","author":"Von Dassow","year":"2008","journal-title":"J.\u00a0Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib99","doi-asserted-by":"crossref","first-page":"343","DOI":"10.2307\/3226012","article-title":"A simple chromosome spread technique for unarmored dinoflagellates and implications of polyploidy in algal cultures","volume":"99","author":"Loper","year":"1980","journal-title":"Trans. Am. Microsc. Soc."},{"key":"10.1016\/j.cub.2023.11.046_bib100","doi-asserted-by":"crossref","first-page":"1165","DOI":"10.1002\/j.1537-2197.1982.tb13360.x","article-title":"A technique for counting chromosomes of armored dinoflagellates, and chromosome numbers of six freshwater dinoflagellate species","volume":"69","author":"Holt","year":"1982","journal-title":"Am. J. Bot."},{"key":"10.1016\/j.cub.2023.11.046_bib101","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1038\/nature05230","article-title":"Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia","volume":"444","author":"Aury","year":"2006","journal-title":"Nature"},{"key":"10.1016\/j.cub.2023.11.046_bib102","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1023\/A:1016072014259","article-title":"Transposable elements and the evolution of genome size in eukaryotes","volume":"115","author":"Kidwell","year":"2002","journal-title":"Genetica"},{"key":"10.1016\/j.cub.2023.11.046_bib103","doi-asserted-by":"crossref","first-page":"71","DOI":"10.3354\/ame044071","article-title":"Exploring strategies for nanoflagellates living in a \u201cwet desert.\u201d","volume":"44","author":"Boenigk","year":"2006","journal-title":"Aquat. Microb. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib104","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1016\/S0091-679X(08)60516-6","article-title":"DAPI staining of fixed cells for high-resolution flow cytometry of nuclear DNA","volume":"33","author":"Otto","year":"1990","journal-title":"Methods Cell Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib105","doi-asserted-by":"crossref","first-page":"1965","DOI":"10.1002\/joc.1276","article-title":"Very high resolution interpolated climate surfaces for global land areas","volume":"25","author":"Hijmans","year":"2005","journal-title":"Int. J. Climatol."},{"key":"10.1016\/j.cub.2023.11.046_bib106","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0169748","article-title":"SoilGrids250m: global gridded soil information based on machine learning","volume":"12","author":"Hengl","year":"2017","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2023.11.046_bib107","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1080\/09670262.2014.905710","article-title":"Morphological delineation and distribution patterns of four newly described species within the Synura petersenii species complex (Chrysophyceae, Stramenopiles)","volume":"49","author":"\u0160kaloud","year":"2014","journal-title":"Eur. J. Phycol."},{"key":"10.1016\/j.cub.2023.11.046_bib108","doi-asserted-by":"crossref","first-page":"312","DOI":"10.1016\/j.ygeno.2017.05.005","article-title":"FastPCR: an in\u00a0silico tool for fast primer and probe design and advanced sequence analysis","volume":"109","author":"Kalendar","year":"2017","journal-title":"Genomics"},{"key":"10.1016\/j.cub.2023.11.046_bib109","doi-asserted-by":"crossref","first-page":"1952","DOI":"10.1111\/j.1365-294X.2011.05066.x","article-title":"The performance of phylogenetic algorithms in estimating haplotype genealogies with migration","volume":"20","author":"Salzburger","year":"2011","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib110","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","article-title":"RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies","volume":"30","author":"Stamatakis","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2023.11.046_bib111","series-title":"FastQC: a quality control tool for high throughput sequence data","author":"Andrews","year":"2010"},{"key":"10.1016\/j.cub.2023.11.046_bib112","doi-asserted-by":"crossref","DOI":"10.1186\/s13059-019-1891-0","article-title":"Improved metagenomic analysis with Kraken 2","volume":"20","author":"Wood","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib113","doi-asserted-by":"crossref","first-page":"4737","DOI":"10.1111\/mec.15253","article-title":"Stacks 2: analytical methods for paired-end sequencing improve RADseq-based population genomics","volume":"28","author":"Rochette","year":"2019","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib114","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1093\/bioinformatics\/btr642","article-title":"PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs","volume":"28","author":"Lischer","year":"2012","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2023.11.046_bib115","series-title":"R: A Language and Environment for Statistical Computing","year":"2020"},{"key":"10.1016\/j.cub.2023.11.046_bib116","doi-asserted-by":"crossref","first-page":"945","DOI":"10.1093\/genetics\/155.2.945","article-title":"Inference of population structure using multilocus genotype data","volume":"155","author":"Pritchard","year":"2000","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2023.11.046_bib117","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2156-11-94","article-title":"Discriminant analysis of principal components: a new method for the analysis of genetically structured populations","volume":"11","author":"Jombart","year":"2010","journal-title":"BMC Genet."},{"key":"10.1016\/j.cub.2023.11.046_bib118","doi-asserted-by":"crossref","first-page":"216","DOI":"10.1111\/1755-0998.12442","article-title":"Netview p: a network visualization tool to unravel complex population structure using genome-wide SNPs","volume":"16","author":"Steinig","year":"2016","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2023.11.046_bib119","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0070651","article-title":"ParallelStructure: a R package to distribute parallel runs of the population genetics program STRUCTURE on multi-core computers","volume":"8","author":"Besnier","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2023.11.046_bib120","doi-asserted-by":"crossref","first-page":"1179","DOI":"10.1111\/1755-0998.12387","article-title":"Clumpak: a program for identifying clustering modes and packaging population structure inferences across K","volume":"15","author":"Kopelman","year":"2015","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2023.11.046_bib121","doi-asserted-by":"crossref","first-page":"176","DOI":"10.1111\/1755-0998.12719","article-title":"StructureSelector: a web-based software to select and visualize the optimal number of clusters using multiple methods","volume":"18","author":"Li","year":"2018","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2023.11.046_bib122","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1093\/molbev\/msu300","article-title":"IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies","volume":"32","author":"Nguyen","year":"2015","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib123","doi-asserted-by":"crossref","DOI":"10.1093\/ve\/vey016","article-title":"Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10","volume":"4","author":"Suchard","year":"2018","journal-title":"Virus Evol."},{"key":"10.1016\/j.cub.2023.11.046_bib124","doi-asserted-by":"crossref","first-page":"1555","DOI":"10.1534\/genetics.115.181453","article-title":"Genome-wide scan for adaptive divergence and association with population-specific covariates","volume":"201","author":"Gautier","year":"2015","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2023.11.046_bib125","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1127\/1438-9134\/2010\/0136-0283","article-title":"Unveiling hidden diversity in the Synura petersenii species complex (Synurophyceae, Heterokontophyta)","volume":"136","author":"Kyn\u010dlov\u00e1","year":"2010","journal-title":"Nova Hedwig Beih."},{"key":"10.1016\/j.cub.2023.11.046_bib126","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1007\/978-1-61779-228-1_9","article-title":"SNP discovery and genotyping for evolutionary genetics using RAD sequencing","volume":"772","author":"Etter","year":"2011","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib127","first-page":"63","article-title":"Genome size in liverworts","volume":"82","author":"Temsch","year":"2010","journal-title":"Preslia"},{"key":"10.1016\/j.cub.2023.11.046_bib128","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1093\/aob\/mci005","article-title":"Plant DNA flow cytometry and estimation of nuclear genome size","volume":"95","author":"Dole\u017eel","year":"2005","journal-title":"Ann. Bot."},{"key":"10.1016\/j.cub.2023.11.046_bib129","doi-asserted-by":"crossref","DOI":"10.1186\/s12859-016-1016-7","article-title":"Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves","volume":"17","author":"Sprouffske","year":"2016","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.cub.2023.11.046_bib130","series-title":"ggplot2 Elegant Graphics for Data Analysis (Use R!)","author":"Wickham","year":"2016"},{"key":"10.1016\/j.cub.2023.11.046_bib131","doi-asserted-by":"crossref","first-page":"2640","DOI":"10.1038\/nprot.2017.123","article-title":"Deriving genotypes from RAD-seq short-read data using Stacks","volume":"12","author":"Rochette","year":"2017","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.cub.2023.11.046_bib132","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1111\/1755-0998.12549","article-title":"vcfr: a package to manipulate and visualize variant call format data in R","volume":"17","author":"Knaus","year":"2017","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2023.11.046_bib133","series-title":"Proceedings of the 2010 Gateway Computing Environments Workshop (GCE)","first-page":"1","article-title":"Creating the CIPRES Science Gateway for inference of large phylogenetic trees","author":"Miller","year":"2010"},{"key":"10.1016\/j.cub.2023.11.046_bib134","doi-asserted-by":"crossref","first-page":"1403","DOI":"10.1093\/bioinformatics\/btn129","article-title":"Adegenet: a R package for the multivariate analysis of genetic markers","volume":"24","author":"Jombart","year":"2008","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2023.11.046_bib135","first-page":"1","article-title":"The ade4 package: implementing the duality diagram for ecologists","volume":"22","author":"Dray","year":"2007","journal-title":"J.\u00a0Stat. Softw."},{"key":"10.1016\/j.cub.2023.11.046_bib136","doi-asserted-by":"crossref","first-page":"946","DOI":"10.1111\/1755-0998.12129","article-title":"StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations","volume":"13","author":"Pembleton","year":"2013","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2023.11.046_bib137","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1093\/sysbio\/syy032","article-title":"Posterior summarization in Bayesian phylogenetics using Tracer 1.7","volume":"67","author":"Rambaut","year":"2018","journal-title":"Syst. Biol."},{"key":"10.1016\/j.cub.2023.11.046_bib138","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1111\/1755-0998.12592","article-title":"pcadapt: an R package to perform genome scans for selection based on principal component analysis","volume":"17","author":"Luu","year":"2017","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2023.11.046_bib139","author":"Storey"},{"key":"10.1016\/j.cub.2023.11.046_bib140","doi-asserted-by":"crossref","first-page":"483","DOI":"10.1016\/j.ecolmodel.2006.02.015","article-title":"Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM)","volume":"196","author":"Dray","year":"2006","journal-title":"Ecol. Modell."},{"key":"10.1016\/j.cub.2023.11.046_bib141","series-title":"BoSSA: a bunch of structure and sequence analysis","author":"Lefeuvre","year":"2018"},{"key":"10.1016\/j.cub.2023.11.046_bib142","series-title":"vegan: community ecology package","author":"Oksanen","year":"2018"},{"key":"10.1016\/j.cub.2023.11.046_bib143","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1890\/11-0252.1","article-title":"Gradient forests: calculating importance gradients on physical predictors","volume":"93","author":"Ellis","year":"2012","journal-title":"Ecology"},{"key":"10.1016\/j.cub.2023.11.046_bib144","first-page":"1","article-title":"MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package","volume":"33","author":"Hadfield","year":"2010","journal-title":"J.\u00a0Stat. Softw."},{"key":"10.1016\/j.cub.2023.11.046_bib145","doi-asserted-by":"crossref","first-page":"4373","DOI":"10.1111\/mec.12870","article-title":"Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence in Restio capensis (Restionaceae)","volume":"23","author":"Lexer","year":"2014","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2023.11.046_bib146","doi-asserted-by":"crossref","first-page":"1210","DOI":"10.1111\/1755-0998.12663","article-title":"The empirical Bayes estimators of fine-scale population structure in high gene flow species","volume":"17","author":"Kitada","year":"2017","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2023.11.046_bib147","first-page":"1","article-title":"FactoMineR: an R package for multivariate analysis","volume":"25","author":"L\u00ea","year":"2008","journal-title":"J.\u00a0Stat. Software"},{"key":"10.1016\/j.cub.2023.11.046_bib148","series-title":"R package \u2018corrplot\u2019: visualization of a correlation matrix","author":"Wei","year":"2017"}],"container-title":["Current Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982223016317?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982223016317?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,12]],"date-time":"2026-05-12T07:28:02Z","timestamp":1778570882000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0960982223016317"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,1]]},"references-count":148,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2024,1]]}},"alternative-id":["S0960982223016317"],"URL":"https:\/\/doi.org\/10.1016\/j.cub.2023.11.046","relation":{},"ISSN":["0960-9822"],"issn-type":[{"value":"0960-9822","type":"print"}],"subject":[],"published":{"date-parts":[[2024,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Rapid diversification of a free-living protist is driven by adaptation to climate and habitat","name":"articletitle","label":"Article Title"},{"value":"Current Biology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.cub.2023.11.046","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2023 Elsevier Inc.","name":"copyright","label":"Copyright"}]}}