{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,7]],"date-time":"2026-08-07T15:00:18Z","timestamp":1786114818965,"version":"build-2736575974"},"reference-count":89,"publisher":"Elsevier BV","issue":"15","license":[{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,8,5]],"date-time":"2025-08-05T00:00:00Z","timestamp":1754352000000},"content-version":"vor","delay-in-days":369,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["IOS 1931114"],"award-info":[{"award-number":["IOS 1931114"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R35GM138016"],"award-info":[{"award-number":["R35GM138016"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["7004898"],"award-info":[{"award-number":["7004898"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Current Biology"],"published-print":{"date-parts":[[2024,8]]},"DOI":"10.1016\/j.cub.2024.06.064","type":"journal-article","created":{"date-parts":[[2024,7,25]],"date-time":"2024-07-25T11:46:32Z","timestamp":1721907992000},"page":"3454-3472.e7","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":10,"title":["A conserved GRAS-domain transcriptional regulator links meristem indeterminacy to sex determination in Ceratopteris gametophytes"],"prefix":"10.1016","volume":"34","author":[{"given":"Yuan","family":"Geng","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chong","family":"Xie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"An","family":"Yan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xi","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dinh Nhan","family":"Lai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xing","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4105-5174","authenticated-orcid":false,"given":"Yun","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.cub.2024.06.064_bib1","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1016\/S0092-8674(00)81868-1","article-title":"Genetic control of cell division patterns in developing plants","volume":"88","author":"Meyerowitz","year":"1997","journal-title":"Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib2","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1038\/nrm3790","article-title":"Plant and animal stem cells: similar yet different","volume":"15","author":"Heidstra","year":"2014","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib3","series-title":"Patterns in Plant Development","author":"Steeves","year":"1989"},{"key":"10.1016\/j.cub.2024.06.064_bib4","doi-asserted-by":"crossref","first-page":"S133","DOI":"10.1105\/tpc.018192","article-title":"Female gametophyte development","volume":"16","author":"Yadegari","year":"2004","journal-title":"Plant Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib5","doi-asserted-by":"crossref","first-page":"S142","DOI":"10.1105\/tpc.016659","article-title":"Control of male gametophyte development","volume":"16","author":"McCormick","year":"2004","journal-title":"Plant Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib6","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1146\/annurev.arplant.50.1.163","article-title":"Gametophyte development in ferns","volume":"50","author":"Banks","year":"1999","journal-title":"Annu. Rev. Plant Physiol. Plant Mol. Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib7","first-page":"141","article-title":"Review a new classification of the gametophyte development of homosporous ferns, focusing on meristem behaviour","volume":"19","author":"Imaichi","year":"2013","journal-title":"Fern Gaz."},{"key":"10.1016\/j.cub.2024.06.064_bib8","doi-asserted-by":"crossref","first-page":"295","DOI":"10.1007\/BF02859157","article-title":"Gametophytes of homosporous ferns","volume":"37","author":"Nayar","year":"1971","journal-title":"Bot. Rev."},{"key":"10.1016\/j.cub.2024.06.064_bib9","doi-asserted-by":"crossref","first-page":"evab042","DOI":"10.1093\/gbe\/evab042","article-title":"A de novo transcriptome assembly of Ceratopteris richardii provides insights into the evolutionary dynamics of complex gene families in land plants","volume":"13","author":"Geng","year":"2021","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.cub.2024.06.064_bib10","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.75019","article-title":"The biology of C.\u00a0richardii as a tool to understand plant evolution","volume":"11","author":"Kinosian","year":"2022","journal-title":"eLife"},{"key":"10.1016\/j.cub.2024.06.064_bib11","doi-asserted-by":"crossref","first-page":"100","DOI":"10.3389\/fpls.2015.00100","article-title":"Reproduction and the pheromonal regulation of sex type in fern gametophytes","volume":"6","author":"Atallah","year":"2015","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib12","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1016\/j.ydbio.2019.08.017","article-title":"An ontogenetic framework for functional studies in the model fern Ceratopteris richardii","volume":"457","author":"Conway","year":"2020","journal-title":"Dev. Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib13","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1111\/tpj.13479","article-title":"A fern AINTEGUMENTA gene mirrors BABY BOOM in promoting apogamy in Ceratopteris richardii","volume":"90","author":"Bui","year":"2017","journal-title":"Plant J."},{"key":"10.1016\/j.cub.2024.06.064_bib14","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1186\/s13104-015-1193-x","article-title":"Transient and stable transformation of Ceratopteris richardii gametophytes","volume":"8","author":"Bui","year":"2015","journal-title":"BMC Res. Notes"},{"key":"10.1016\/j.cub.2024.06.064_bib15","doi-asserted-by":"crossref","first-page":"1038","DOI":"10.1038\/s41477-022-01226-7","article-title":"Dynamic genome evolution in a model fern","volume":"8","author":"Marchant","year":"2022","journal-title":"Nat. Plants"},{"key":"10.1016\/j.cub.2024.06.064_bib16","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.39625","article-title":"LEAFY maintains apical stem cell activity during shoot development in the fern Ceratopteris richardii","volume":"7","author":"Plackett","year":"2018","journal-title":"eLife"},{"key":"10.1016\/j.cub.2024.06.064_bib17","doi-asserted-by":"crossref","first-page":"12862","DOI":"10.1073\/pnas.1606614113","article-title":"Abscisic acid controlled sex before transpiration in vascular plants","volume":"113","author":"McAdam","year":"2016","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2024.06.064_bib18","doi-asserted-by":"crossref","first-page":"1734","DOI":"10.1104\/pp.105.062851","article-title":"Profile and analysis of gene expression changes during early development in germinating spores of Ceratopteris richardii","volume":"138","author":"Salmi","year":"2005","journal-title":"Plant Physiol."},{"key":"10.1016\/j.cub.2024.06.064_bib19","doi-asserted-by":"crossref","first-page":"284","DOI":"10.1007\/s003440000032","article-title":"Ceratopteris richardii: a productive model for revealing secrets of signaling and development","volume":"19","author":"Chatterjee","year":"2000","journal-title":"J.\u00a0Plant Growth Regul."},{"key":"10.1016\/j.cub.2024.06.064_bib20","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1086\/297135","article-title":"The programming of sexual phenotype in the homosporous fern Ceratopteris richardii","volume":"154","author":"Banks","year":"1993","journal-title":"Int. J. Plant Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib21","doi-asserted-by":"crossref","first-page":"1304","DOI":"10.1002\/j.1537-2197.1987.tb08743.x","article-title":"Ceratopteris richardii: applications for experimental plant biology","volume":"74","author":"Hickok","year":"1987","journal-title":"Am. J. Bot."},{"key":"10.1016\/j.cub.2024.06.064_bib22","doi-asserted-by":"crossref","first-page":"650","DOI":"10.1038\/s42003-022-03627-y","article-title":"Positional cues and cell division dynamics drive meristem development and archegonium formation in Ceratopteris gametophytes","volume":"5","author":"Geng","year":"2022","journal-title":"Commun. Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib23","doi-asserted-by":"crossref","first-page":"1885","DOI":"10.1093\/genetics\/147.4.1885","article-title":"The TRANSFORMER genes of the fern Ceratopteris simultaneously promote meristem and archegonia development and repress antheridia development in the developing gametophyte","volume":"147","author":"Banks","year":"1997","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2024.06.064_bib24","doi-asserted-by":"crossref","first-page":"1949","DOI":"10.1242\/dev.120.7.1949","article-title":"Sex-determining genes in the homosporous fern Ceratopteris","volume":"120","author":"Banks","year":"1994","journal-title":"Development"},{"key":"10.1016\/j.cub.2024.06.064_bib25","doi-asserted-by":"crossref","first-page":"S61","DOI":"10.1105\/tpc.016667","article-title":"Sex-determining mechanisms in land plants","volume":"16","author":"Tanurdzic","year":"2004","journal-title":"Plant Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib26","doi-asserted-by":"crossref","first-page":"1271","DOI":"10.1093\/genetics\/159.3.1271","article-title":"Characterization of mutations that feminize gametophytes of the fern Ceratopteris","volume":"159","author":"Strain","year":"2001","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2024.06.064_bib27","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1111\/j.1365-313X.2010.04359.x","article-title":"LOST MERISTEMS genes regulate cell differentiation of central zone descendants in Arabidopsis shoot meristems","volume":"64","author":"Schulze","year":"2010","journal-title":"Plant J."},{"key":"10.1016\/j.cub.2024.06.064_bib28","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1111\/tpj.15169","article-title":"Conservation and diversification of HAIRY MERISTEM gene family in land plants","volume":"106","author":"Geng","year":"2021","journal-title":"Plant J."},{"key":"10.1016\/j.cub.2024.06.064_bib29","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1104\/pp.110.168757","article-title":"Arabidopsis homologs of the Petunia HAIRY MERISTEM gene are required for maintenance of shoot and root indeterminacy","volume":"155","author":"Engstrom","year":"2011","journal-title":"Plant Physiol."},{"key":"10.1016\/j.cub.2024.06.064_bib30","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1016\/j.pbi.2019.10.004","article-title":"Transcriptional circuits in control of shoot stem cell homeostasis","volume":"53","author":"Han","year":"2020","journal-title":"Curr. Opin. Plant Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib31","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2021.800332","article-title":"HAM gene family and shoot meristem development","volume":"12","author":"Geng","year":"2021","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib32","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2020.541968","article-title":"The overlapping and distinct roles of HAM family genes in Arabidopsis shoot meristems","volume":"11","author":"Han","year":"2020","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib33","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1126\/science.aar8638","article-title":"HAIRY MERISTEM with WUSCHEL confines CLAVATA3 expression to the outer apical meristem layers","volume":"361","author":"Zhou","year":"2018","journal-title":"Science"},{"key":"10.1016\/j.cub.2024.06.064_bib34","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1038\/nature13853","article-title":"Control of plant stem cell function by conserved interacting transcriptional regulators","volume":"517","author":"Zhou","year":"2015","journal-title":"Nature"},{"key":"10.1016\/j.cub.2024.06.064_bib35","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1016\/j.plantsci.2012.12.011","article-title":"CaHAM is autoregulated and regulates CaSTM expression and is required for shoot apical meristem organization in pepper","volume":"203","author":"David-Schwartz","year":"2013","journal-title":"Plant Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib36","doi-asserted-by":"crossref","first-page":"794","DOI":"10.1093\/mp\/ssq042","article-title":"MicroRNA171c-targeted SCL6-II, SCL6-III, and SCL6-IV genes regulate shoot branching in Arabidopsis","volume":"3","author":"Wang","year":"2010","journal-title":"Mol. Plant"},{"key":"10.1016\/j.cub.2024.06.064_bib37","doi-asserted-by":"crossref","first-page":"2213","DOI":"10.1101\/gad.230702","article-title":"Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells","volume":"16","author":"Stuurman","year":"2002","journal-title":"Genes Dev."},{"key":"10.1016\/j.cub.2024.06.064_bib38","doi-asserted-by":"crossref","first-page":"2544","DOI":"10.3390\/ijms23052544","article-title":"Function and regulation of microRNA171 in plant stem cell homeostasis and developmental programing","volume":"23","author":"Han","year":"2022","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib39","doi-asserted-by":"crossref","first-page":"1214","DOI":"10.1038\/s41467-020-14989-4","article-title":"A signal cascade originated from epidermis defines apical-basal patterning of Arabidopsis shoot apical meristems","volume":"11","author":"Han","year":"2020","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2024.06.064_bib40","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1016\/S0092-8674(02)00863-2","article-title":"Prediction of plant microRNA targets","volume":"110","author":"Rhoades","year":"2002","journal-title":"Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib41","doi-asserted-by":"crossref","first-page":"2053","DOI":"10.1126\/science.1076311","article-title":"Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA","volume":"297","author":"Llave","year":"2002","journal-title":"Science"},{"key":"10.1016\/j.cub.2024.06.064_bib42","doi-asserted-by":"crossref","DOI":"10.1080\/15592324.2021.1940001","article-title":"N-terminal region is required for functions of the HAM family member","volume":"16","author":"Geng","year":"2021","journal-title":"Plant Signal. Behav."},{"key":"10.1016\/j.cub.2024.06.064_bib43","doi-asserted-by":"crossref","first-page":"490","DOI":"10.1093\/pcp\/pch048","article-title":"Simple RNAi vectors for stable and transient suppression of gene function in rice","volume":"45","author":"Miki","year":"2004","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.cub.2024.06.064_bib44","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1046\/j.1365-313X.2003.01641.x","article-title":"A role for HvGAMYB in anther development","volume":"33","author":"Murray","year":"2003","journal-title":"Plant J."},{"key":"10.1016\/j.cub.2024.06.064_bib45","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1105\/tpc.017327","article-title":"Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development","volume":"16","author":"Kaneko","year":"2004","journal-title":"Plant Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib46","doi-asserted-by":"crossref","first-page":"1453","DOI":"10.1105\/tpc.108.062935","article-title":"Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB","volume":"21","author":"Aya","year":"2009","journal-title":"Plant Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib47","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1126\/science.1259923","article-title":"Antheridiogen determines sex in ferns via a spatiotemporally split gibberellin synthesis pathway","volume":"346","author":"Tanaka","year":"2014","journal-title":"Science"},{"key":"10.1016\/j.cub.2024.06.064_bib48","series-title":"International Review of Cytology","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0074-7696(08)62177-4","article-title":"Fern Antheridiogens","volume":"184","author":"Yamane","year":"1998"},{"key":"10.1016\/j.cub.2024.06.064_bib49","doi-asserted-by":"crossref","first-page":"2415","DOI":"10.1073\/pnas.0712168105","article-title":"A chemical method for fast and sensitive detection of DNA synthesis in\u00a0vivo","volume":"105","author":"Salic","year":"2008","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2024.06.064_bib50","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1186\/1746-4811-6-5","article-title":"A rapid and robust assay for detection of S-phase cell cycle progression in plant cells and tissues by using ethynyl deoxyuridine","volume":"6","author":"Kotog\u00e1ny","year":"2010","journal-title":"Plant Methods"},{"key":"10.1016\/j.cub.2024.06.064_bib51","doi-asserted-by":"crossref","first-page":"1650","DOI":"10.1105\/tpc.15.00065","article-title":"Auxin produced by the indole-3-pyruvic acid pathway regulates development and gemmae dormancy in the liverwort Marchantia polymorpha","volume":"27","author":"Eklund","year":"2015","journal-title":"Plant Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib52","doi-asserted-by":"crossref","first-page":"3833","DOI":"10.1016\/j.cub.2020.07.016","article-title":"Induction of multichotomous branching by CLAVATA peptide in Marchantia polymorpha","volume":"30","author":"Hirakawa","year":"2020","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib53","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1016\/j.pbi.2015.05.014","article-title":"Plant expansins: diversity and interactions with plant cell walls","volume":"25","author":"Cosgrove","year":"2015","journal-title":"Curr. Opin. Plant Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib54","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1007\/s00497-021-00417-0","article-title":"Switching it up: algal insights into sexual transitions","volume":"34","author":"Coelho","year":"2021","journal-title":"Plant Reprod."},{"key":"10.1016\/j.cub.2024.06.064_bib55","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1002\/dvg.1020150304","article-title":"Genetics of sex determination in flowering plants","volume":"15","author":"Grant","year":"1994","journal-title":"Dev. Genet."},{"key":"10.1016\/j.cub.2024.06.064_bib56","series-title":"Current Topics in Developmental Biology","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1016\/S0070-2153(08)60247-1","article-title":"5 Sex determination in plants","volume":"38","author":"Ainsworth","year":"1997"},{"key":"10.1016\/j.cub.2024.06.064_bib57","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1016\/j.cub.2009.02.050","article-title":"Local cues and asymmetric cell divisions underpin body plan transitions in the moss Physcomitrella patens","volume":"19","author":"Harrison","year":"2009","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib58","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/s11103-021-01125-z","article-title":"PpGRAS12 acts as a positive regulator of meristem formation in Physcomitrium patens","volume":"107","author":"Beheshti","year":"2021","journal-title":"Plant Mol. Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib60","doi-asserted-by":"crossref","first-page":"708","DOI":"10.2144\/000112306","article-title":"Minimal T-DNA vectors suitable for agricultural deployment of transgenic plants","volume":"41","author":"Barrell","year":"2006","journal-title":"BioTechniques"},{"key":"10.1016\/j.cub.2024.06.064_bib61","doi-asserted-by":"crossref","first-page":"462","DOI":"10.1104\/pp.103.027979","article-title":"A gateway cloning vector set for high-throughput functional analysis of genes in planta","volume":"133","author":"Curtis","year":"2003","journal-title":"Plant Physiol."},{"key":"10.1016\/j.cub.2024.06.064_bib62","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1038\/nmeth.2019","article-title":"Fiji: an open-source platform for biological-image analysis","volume":"9","author":"Schindelin","year":"2012","journal-title":"Nat. Methods"},{"key":"10.1016\/j.cub.2024.06.064_bib63","doi-asserted-by":"crossref","first-page":"460","DOI":"10.1038\/s41477-018-0188-8","article-title":"Fern genomes elucidate land plant evolution and cyanobacterial symbioses","volume":"4","author":"Li","year":"2018","journal-title":"Nat. Plants"},{"key":"10.1016\/j.cub.2024.06.064_bib64","doi-asserted-by":"crossref","first-page":"D68","DOI":"10.1093\/nar\/gkt1181","article-title":"miRBase: annotating high confidence microRNAs using deep sequencing data","volume":"42","author":"Kozomara","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.cub.2024.06.064_bib65","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1186\/s13059-019-1832-y","article-title":"OrthoFinder: phylogenetic orthology inference for comparative genomics","volume":"20","author":"Emms","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib66","doi-asserted-by":"crossref","first-page":"D1468","DOI":"10.1093\/nar\/gkab1024","article-title":"PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants","volume":"50","author":"Van Bel","year":"2022","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.cub.2024.06.064_bib67","doi-asserted-by":"crossref","first-page":"1160","DOI":"10.1093\/bib\/bbx108","article-title":"MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization","volume":"20","author":"Katoh","year":"2019","journal-title":"Brief. Bioinform."},{"key":"10.1016\/j.cub.2024.06.064_bib68","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1093\/molbev\/msu300","article-title":"IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies","volume":"32","author":"Nguyen","year":"2015","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2024.06.064_bib69","doi-asserted-by":"crossref","first-page":"W256","DOI":"10.1093\/nar\/gkz239","article-title":"Interactive Tree Of Life (iTOL) v4: recent updates and new developments","volume":"47","author":"Letunic","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.cub.2024.06.064_bib70","doi-asserted-by":"crossref","first-page":"3022","DOI":"10.1093\/molbev\/msab120","article-title":"MEGA11: Molecular Evolutionary Genetics Analysis Version 11","volume":"38","author":"Tamura","year":"2021","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2024.06.064_bib71","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1007\/978-1-60327-429-6_1","article-title":"UNAFold: software for nucleic acid folding and hybridization","volume":"453","author":"Markham","year":"2008","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib72","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1038\/s41587-019-0201-4","article-title":"Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype","volume":"37","author":"Kim","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.cub.2024.06.064_bib73","doi-asserted-by":"crossref","first-page":"923","DOI":"10.1093\/bioinformatics\/btt656","article-title":"featureCounts: an efficient general-purpose program for assigning sequence reads to genomic features","volume":"30","author":"Liao","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2024.06.064_bib74","series-title":"ggplot2 Elegant Graphics For Data Analysis","author":"Wickham","year":"2016"},{"key":"10.1016\/j.cub.2024.06.064_bib75","first-page":"726","article-title":"Pheatmap: pretty heatmaps","author":"Kolde","year":"2019","journal-title":"R package version 1"},{"key":"10.1016\/j.cub.2024.06.064_bib76","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib77","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1186\/1471-2105-12-35","article-title":"VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R","volume":"12","author":"Chen","year":"2011","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.cub.2024.06.064_bib78","article-title":"clusterProfiler 4.0: A universal enrichment tool for interpreting omics data","volume":"2","author":"Wu","year":"2021","journal-title":"Innovation (Camb)"},{"key":"10.1016\/j.cub.2024.06.064_bib79","article-title":"rrvgo: a Bioconductor package to reduce and visualize Gene Ontology terms","author":"Sayols","year":"2023","journal-title":"MicroPubl Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib80","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1186\/s13007-015-0080-8","article-title":"Protocol: genetic transformation of the fern Ceratopteris richardii through microparticle bombardment","volume":"11","author":"Plackett","year":"2015","journal-title":"Plant Methods"},{"key":"10.1016\/j.cub.2024.06.064_bib81","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1104\/pp.113.231357","article-title":"High-efficiency stable transformation of the model fern species Ceratopteris richardii via microparticle bombardment","volume":"165","author":"Plackett","year":"2014","journal-title":"Plant Physiol."},{"key":"10.1016\/j.cub.2024.06.064_bib82","doi-asserted-by":"crossref","DOI":"10.1017\/qpb.2022.21","article-title":"Quantitative live-imaging reveals the dynamics of apical cells during gametophyte development in ferns","volume":"3","author":"Wu","year":"2022","journal-title":"Quant. Plant Biol."},{"key":"10.1016\/j.cub.2024.06.064_bib83","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1111\/tpj.15784","article-title":"Cell growth dynamics in two types of apical meristems in fern gametophytes","volume":"111","author":"Wu","year":"2022","journal-title":"Plant J."},{"key":"10.1016\/j.cub.2024.06.064_bib84","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1109\/34.87344","article-title":"Watersheds in digital spaces: an efficient algorithm based on immersion simulations","volume":"13","author":"Vincent","year":"1991","journal-title":"IEEE Trans. Pattern Anal. Machine Intell."},{"key":"10.1016\/j.cub.2024.06.064_bib85","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1104\/pp.19.01082","article-title":"Insights into the diversification and evolution of R2R3-MYB transcription factors in plants","volume":"183","author":"Jiang","year":"2020","journal-title":"Plant Physiol."},{"key":"10.1016\/j.cub.2024.06.064_bib86","doi-asserted-by":"crossref","first-page":"1791","DOI":"10.3390\/ijms18081791","article-title":"Bioinformatics analysis of phylogeny and transcription of TAA\/YUC auxin biosynthetic genes","volume":"18","author":"Poulet","year":"2017","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib87","doi-asserted-by":"crossref","first-page":"523","DOI":"10.3389\/fpls.2018.00523","article-title":"The YUCCA-Auxin-WOX11 module controls crown root development in rice","volume":"9","author":"Zhao","year":"2018","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.cub.2024.06.064_bib88","first-page":"1650","article-title":"A PXY-mediated pathway for cellular communication during xylem differentiation in Arabidopsis","volume":"27","author":"Smit","year":"2015","journal-title":"Plant Cell"},{"key":"10.1016\/j.cub.2024.06.064_bib89","doi-asserted-by":"crossref","first-page":"1188","DOI":"10.1093\/molbev\/mst024","article-title":"Ultrafast approximation for phylogenetic Bootstrap","volume":"30","author":"Minh","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2024.06.064_bib90","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1038\/nmeth.4285","article-title":"ModelFinder: fast model selection for accurate phylogenetic estimates","volume":"14","author":"Kalyaanamoorthy","year":"2017","journal-title":"Nat. Methods"}],"container-title":["Current Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982224008480?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982224008480?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,8,5]],"date-time":"2026-08-05T21:42:52Z","timestamp":1785966172000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0960982224008480"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,8]]},"references-count":89,"journal-issue":{"issue":"15","published-print":{"date-parts":[[2024,8]]}},"alternative-id":["S0960982224008480"],"URL":"https:\/\/doi.org\/10.1016\/j.cub.2024.06.064","relation":{},"ISSN":["0960-9822"],"issn-type":[{"value":"0960-9822","type":"print"}],"subject":[],"published":{"date-parts":[[2024,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A conserved GRAS-domain transcriptional regulator links meristem indeterminacy to sex determination in Ceratopteris gametophytes","name":"articletitle","label":"Article Title"},{"value":"Current Biology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.cub.2024.06.064","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Elsevier Inc.","name":"copyright","label":"Copyright"}]}}