{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,3]],"date-time":"2026-04-03T01:55:07Z","timestamp":1775181307556,"version":"3.50.1"},"reference-count":147,"publisher":"Elsevier BV","issue":"2","license":[{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,11,28]],"date-time":"2025-11-28T00:00:00Z","timestamp":1764288000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000781","name":"European Research Council","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000781","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002808","name":"Carlsberg Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002808","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Current Biology"],"published-print":{"date-parts":[[2026,1]]},"DOI":"10.1016\/j.cub.2025.11.076","type":"journal-article","created":{"date-parts":[[2026,1,19]],"date-time":"2026-01-19T15:44:16Z","timestamp":1768837456000},"page":"458-473.e8","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["Population structure and domestication history of the Javan banteng"],"prefix":"10.1016","volume":"36","author":[{"ORCID":"https:\/\/orcid.org\/0009-0009-5146-8408","authenticated-orcid":false,"given":"Xi","family":"Wang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sabhrina Gita","family":"Aninta","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gen\u00eds","family":"Garcia-Erill","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zilong","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anubhab","family":"Khan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaodong","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Laura D.","family":"Bertola","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anik Budhi","family":"Dharmayanthi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"family":"Yulianto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"family":"Yonathan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Conor","family":"Rossi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Reagan","family":"Cauble-Sims","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Benjamin D.","family":"Rosen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Darren E.","family":"Hagen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael P.","family":"Heaton","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Timothy P.L.","family":"Smith","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Johannes A.","family":"Lenstra","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nuno F.G.","family":"Martins","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mikkel-Holger S.","family":"Sinding","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Muhammad","family":"Agil","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bambang","family":"Purwantara","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christina","family":"Hvilsom","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gono","family":"Semiadi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6583-6923","authenticated-orcid":false,"given":"Rasmus","family":"Heller","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.cub.2025.11.076_bib1","doi-asserted-by":"crossref","first-page":"700","DOI":"10.1038\/nature01019","article-title":"Evolution, consequences and future of plant and animal domestication","volume":"418","author":"Diamond","year":"2002","journal-title":"Nature"},{"key":"10.1016\/j.cub.2025.11.076_bib2","doi-asserted-by":"crossref","first-page":"6139","DOI":"10.1073\/pnas.1323964111","article-title":"Current perspectives and the future of domestication studies","volume":"111","author":"Larson","year":"2014","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2025.11.076_bib3","doi-asserted-by":"crossref","first-page":"663","DOI":"10.1016\/j.tree.2022.04.006","article-title":"What is domestication?","volume":"37","author":"Purugganan","year":"2022","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib4","doi-asserted-by":"crossref","first-page":"449","DOI":"10.1038\/s41576-020-0225-0","article-title":"Animal domestication in the era of ancient genomics","volume":"21","author":"Frantz","year":"2020","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib5","doi-asserted-by":"crossref","first-page":"1139","DOI":"10.1038\/s41559-018-0562-y","article-title":"Pervasive introgression facilitated domestication and adaptation in the Bos species complex","volume":"2","author":"Wu","year":"2018","journal-title":"Nat. Ecol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib6","doi-asserted-by":"crossref","first-page":"R157","DOI":"10.1016\/j.cub.2008.01.019","article-title":"Mitochondrial genomes of extinct aurochs survive in domestic cattle","volume":"18","author":"Achilli","year":"2008","journal-title":"Curr. Biol."},{"key":"10.1016\/j.cub.2025.11.076_bib7","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1126\/science.aav1002","article-title":"Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent","volume":"365","author":"Verdugo","year":"2019","journal-title":"Science"},{"key":"10.1016\/j.cub.2025.11.076_bib8","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1038\/s41586-024-08112-6","article-title":"The genomic natural history of the aurochs","volume":"635","author":"Rossi","year":"2024","journal-title":"Nature"},{"key":"10.1016\/j.cub.2025.11.076_bib9","doi-asserted-by":"crossref","DOI":"10.1038\/ncomms10283","article-title":"Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions","volume":"6","author":"Qiu","year":"2015","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2025.11.076_bib10","doi-asserted-by":"crossref","DOI":"10.1371\/annotation\/e674f274-4378-47f1-97e1-f95a2d3bb59b","article-title":"On the origin of Indonesian cattle","volume":"4","author":"Mohamad","year":"2009","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2025.11.076_bib11","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1111\/j.1439-0531.2011.01958.x","article-title":"Indigenous Bali cattle is most suitable for sustainable small farming in Indonesia","volume":"47","author":"Martojo","year":"2012","journal-title":"Reprod. Domest. Anim."},{"key":"10.1016\/j.cub.2025.11.076_bib12","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1111\/j.1439-0531.2011.01960.x","article-title":"The origin of Indonesian cattle and conservation genetics of the Bali cattle breed","volume":"47","author":"Mohamad","year":"2012","journal-title":"Reprod. Domest. Anim."},{"key":"10.1016\/j.cub.2025.11.076_bib13","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1111\/j.1439-0531.2011.01956.x","article-title":"Banteng and Bali cattle in Indonesia: status and forecasts","volume":"47","author":"Purwantara","year":"2012","journal-title":"Reprod. Domest. Anim."},{"key":"10.1016\/j.cub.2025.11.076_bib14","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0241038","article-title":"An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis","volume":"15","author":"Sudrajad","year":"2020","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2025.11.076_bib15","unstructured":"Rollinson, D. (1994). Evolution of Domestic Animals I, L. Mason, ed. (Longman)."},{"key":"10.1016\/j.cub.2025.11.076_bib16","series-title":"Cattle Breeds, an Encyclopedia","author":"Felius","year":"1995"},{"key":"10.1016\/j.cub.2025.11.076_bib17","series-title":"Early Cultures of Mainland Southeast Asia","author":"Higham","year":"2002"},{"key":"10.1016\/j.cub.2025.11.076_bib18","series-title":"Ecology, Evolution and Behaviour of Wild Cattle: Implications for Conservation","author":"Lenstra","year":"2014"},{"key":"10.1016\/j.cub.2025.11.076_bib19","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1111\/age.12974","article-title":"Evolution and domestication of the Bovini species","volume":"51","author":"Zhang","year":"2020","journal-title":"Anim. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib20","first-page":"53","article-title":"Analysis of some factors that affect the success of the implementation of Special Programs for pregnance cows (\u201cUpsus Siwab\u201d) in Bali Province, Indonesia. Indonesia","volume":"6","author":"Kesuma","year":"2019","journal-title":"Int. J. Multidiscip. Approach Stud."},{"key":"10.1016\/j.cub.2025.11.076_bib21","first-page":"44","article-title":"The variation of phenotypics Bali cattle in Bali Province, Indonesia","volume":"7","author":"Warmadewi","year":"2020","journal-title":"Int. J. Fauna Biol. Stud."},{"key":"10.1016\/j.cub.2025.11.076_bib22","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1007\/BF02359609","article-title":"Buffalo and Bali cattle\u2014Exploiting their reproductive behaviour and physiology","volume":"24","author":"McCool","year":"1992","journal-title":"Trop. Anim. Health Prod."},{"key":"10.1016\/j.cub.2025.11.076_bib23","doi-asserted-by":"crossref","first-page":"1306","DOI":"10.1111\/j.1523-1739.2006.00428.x","article-title":"Conservation value of non-native banteng in northern Australia","volume":"20","author":"Bradshaw","year":"2006","journal-title":"Conserv. Biol."},{"key":"10.1016\/j.cub.2025.11.076_bib24","doi-asserted-by":"crossref","first-page":"2998","DOI":"10.1111\/j.1365-294X.2007.03365.x","article-title":"Low genetic diversity in the bottlenecked population of endangered non-native banteng in northern Australia","volume":"16","author":"Bradshaw","year":"2007","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2025.11.076_bib25","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1080\/00074918012331333709","article-title":"The livestock industry","volume":"16","author":"Leake","year":"1980","journal-title":"Bull. Indones. Econ. Stud."},{"key":"10.1016\/j.cub.2025.11.076_bib26","doi-asserted-by":"crossref","DOI":"10.1186\/s12863-015-0229-5","article-title":"Evidence of Bos javanicus x Bos indicus hybridization and major QTLs for birth weight in Indonesian Peranakan Ongole cattle","volume":"16","author":"Hartati","year":"2015","journal-title":"BMC Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib27","doi-asserted-by":"crossref","DOI":"10.13057\/biodiv\/d160230","article-title":"Review: Genetic diversity of local and exotic cattle and their crossbreeding impact on the quality of Indonesian cattle","volume":"16","author":"Sutarno","year":"2015","journal-title":"Biodiversitas"},{"key":"10.1016\/j.cub.2025.11.076_bib28","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41467-024-52768-7","article-title":"The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression","volume":"16","author":"Wang","year":"2025","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2025.11.076_bib29","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1038\/sj.hdy.6800174","article-title":"Hybridization of banteng (Bos javanicus) and zebu (Bos indicus) revealed by mitochondrial DNA, satellite DNA, AFLP and microsatellites","volume":"90","author":"Nijman","year":"2003","journal-title":"Heredity"},{"key":"10.1016\/j.cub.2025.11.076_bib30","series-title":"The Zoological Record, Volume 120","year":"1985"},{"key":"10.1016\/j.cub.2025.11.076_bib31","series-title":"Little-Known Asian Animals with a Promising Economic Future","year":"2002"},{"key":"10.1016\/j.cub.2025.11.076_bib32","unstructured":"Mekong, T.G., and Groenenberg, M. (2024). IUCN Red List of Threatened Species: Bos javanicus. IUCN Red List of Threatened Species."},{"key":"10.1016\/j.cub.2025.11.076_bib33","first-page":"71","article-title":"Genetic characterization of banteng (Bos javanicus) in Lam Pao Wildlife Conservation Development and Promotion Station, Kalasin Province","volume":"6","author":"Saijuntha","year":"2013","journal-title":"Genomics Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib34","article-title":"Phylogenetic position of Javan banteng (Bos javanicus javanicus) from conservation area in Java base on mtDNA analysis","volume":"20","author":"Qiptiyah","year":"2019","journal-title":"Biodivers. J. Biol. Divers."},{"key":"10.1016\/j.cub.2025.11.076_bib35","article-title":"Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species","volume":"22","author":"Sun","year":"2022","journal-title":"BMC Ecol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib36","doi-asserted-by":"crossref","first-page":"647","DOI":"10.56808\/2985-1130.3162","article-title":"Genetic characterization of banteng (Bos javanicus) populations in Thailand for conservation","volume":"51","author":"Chaichanathong","year":"2021","journal-title":"Thai J. Vet. Med."},{"key":"10.1016\/j.cub.2025.11.076_bib37","doi-asserted-by":"crossref","first-page":"970","DOI":"10.56093\/ijans.v93i10.131844","article-title":"Comparison of horned, polled Bali cattle and Banteng based on microsatellite markers","volume":"93","author":"Dagong","year":"2023","journal-title":"Indian J. Anim. Sci."},{"key":"10.1016\/j.cub.2025.11.076_bib38","article-title":"Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia","volume":"9","author":"Chen","year":"2018","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2025.11.076_bib39","doi-asserted-by":"crossref","first-page":"722","DOI":"10.1101\/gr.215087.116","article-title":"Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation","volume":"27","author":"Koren","year":"2017","journal-title":"Genome Res."},{"key":"10.1016\/j.cub.2025.11.076_bib40","article-title":"Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with high-altitude pulmonary hypertension","volume":"5","author":"Heaton","year":"2016","journal-title":"F1000Res"},{"key":"10.1016\/j.cub.2025.11.076_bib41","doi-asserted-by":"crossref","first-page":"8641","DOI":"10.1073\/pnas.0700643104","article-title":"Plant domestication, a unique opportunity to identify the genetic basis of adaptation","volume":"104","author":"Ross-Ibarra","year":"2007","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2025.11.076_bib42","doi-asserted-by":"crossref","first-page":"528","DOI":"10.1126\/science.1167936","article-title":"Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds","volume":"324","author":"Gibbs","year":"2009","journal-title":"Science"},{"key":"10.1016\/j.cub.2025.11.076_bib43","series-title":"Developments in Quaternary Sciences Developments in Quaternary Science","doi-asserted-by":"crossref","first-page":"211","DOI":"10.1016\/S1571-0866(04)80125-8","article-title":"Glaciation of Malaysia and Indonesia, excluding New Guinea","author":"Hope","year":"2004"},{"key":"10.1016\/j.cub.2025.11.076_bib44","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1016\/S0921-8181(02)00089-9","article-title":"The status of the Indo-Pacific Warm Pool and adjacent land at the Last Glacial Maximum","volume":"35","author":"De Deckker","year":"2003","journal-title":"Glob. Planet Change"},{"key":"10.1016\/j.cub.2025.11.076_bib45","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1003905","article-title":"Robust demographic inference from genomic and SNP data","volume":"9","author":"Excoffier","year":"2013","journal-title":"PLoS Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib46","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1093\/sysbio\/syt049","article-title":"The influence of gene flow on species tree estimation: a simulation study","volume":"63","author":"Leach\u00e9","year":"2014","journal-title":"Syst. Biol."},{"key":"10.1016\/j.cub.2025.11.076_bib47","doi-asserted-by":"crossref","first-page":"913","DOI":"10.1038\/nature06250","article-title":"Genome-wide detection and characterization of positive selection in human populations","volume":"449","author":"Sabeti","year":"2007","journal-title":"Nature"},{"key":"10.1016\/j.cub.2025.11.076_bib48","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1016\/j.dsx.2007.09.008","article-title":"Association between the leptin receptor gene polymorphism and lipoprotein profile in Chinese type 2 diabetes","volume":"1","author":"Lu","year":"2007","journal-title":"Diabetes Metab. Syndr."},{"key":"10.1016\/j.cub.2025.11.076_bib49","doi-asserted-by":"crossref","DOI":"10.1186\/s12944-017-0644-x","article-title":"Association of polymorphisms in LEPR with type 2 diabetes and related metabolic traits in a Chinese population","volume":"17","author":"Zhang","year":"2018","journal-title":"Lipids Health Dis."},{"key":"10.1016\/j.cub.2025.11.076_bib50","article-title":"Genetic susceptibility of Iraqis for obesity and type 2 diabetes: LEPR gene polymorphisms","volume":"15","author":"Almyah","year":"2019","journal-title":"Gene Rep."},{"key":"10.1016\/j.cub.2025.11.076_bib51","doi-asserted-by":"crossref","first-page":"246","DOI":"10.1017\/S1751731110001540","article-title":"Leptin in farm animals: where are we and where can we go?","volume":"5","author":"Wylie","year":"2011","journal-title":"Animal"},{"key":"10.1016\/j.cub.2025.11.076_bib52","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/nprot.2015.123","article-title":"SIFT missense predictions for genomes","volume":"11","author":"Vaser","year":"2016","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.cub.2025.11.076_bib53","doi-asserted-by":"crossref","first-page":"610","DOI":"10.1038\/nrg2146","article-title":"The distribution of fitness effects of new mutations","volume":"8","author":"Eyre-Walker","year":"2007","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib54","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1038\/s41576-022-00448-x","article-title":"Genetic load: genomic estimates and applications in non-model animals","volume":"23","author":"Bertorelle","year":"2022","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib55","doi-asserted-by":"crossref","first-page":"794","DOI":"10.1111\/1755-0998.12226","article-title":"Genome-wide variation within and between wild and domestic yak","volume":"14","author":"Wang","year":"2014","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2025.11.076_bib56","doi-asserted-by":"crossref","first-page":"695","DOI":"10.24272\/j.issn.2095-8137.2022.124","article-title":"Whole-genome resequencing reveals molecular imprints of anthropogenic and natural selection in wild and domesticated sheep","volume":"43","author":"Zhang","year":"2022","journal-title":"Zool. Res."},{"key":"10.1016\/j.cub.2025.11.076_bib57","doi-asserted-by":"crossref","DOI":"10.1093\/molbev\/msab353","article-title":"Whole-genome resequencing of worldwide wild and domestic sheep elucidates genetic diversity, introgression, and agronomically important loci","volume":"39","author":"Lv","year":"2022","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib58","doi-asserted-by":"crossref","DOI":"10.1111\/mec.17190","article-title":"Whole-genome SNP genotyping unveils ancestral and recent introgression in wild and domestic goats","volume":"33","author":"Pogorevc","year":"2024","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2025.11.076_bib59","doi-asserted-by":"crossref","DOI":"10.1186\/s12864-015-1606-1","article-title":"Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication","volume":"16","author":"Dong","year":"2015","journal-title":"BMC Genomics"},{"key":"10.1016\/j.cub.2025.11.076_bib60","doi-asserted-by":"crossref","DOI":"10.1126\/sciadv.aaz5216","article-title":"The origin of domestication genes in goats","volume":"6","author":"Zheng","year":"2020","journal-title":"Sci. Adv."},{"key":"10.1016\/j.cub.2025.11.076_bib61","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1038\/ng.3394","article-title":"Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes","volume":"47","author":"Frantz","year":"2015","journal-title":"Nat. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib62","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1038\/s41422-020-0349-y","article-title":"863 genomes reveal the origin and domestication of chicken","volume":"30","author":"Wang","year":"2020","journal-title":"Cell Res."},{"key":"10.1016\/j.cub.2025.11.076_bib63","doi-asserted-by":"crossref","DOI":"10.1186\/s12915-021-01052-x","article-title":"Large-scale genomic analysis reveals the genetic cost of chicken domestication","volume":"19","author":"Wang","year":"2021","journal-title":"BMC Biol."},{"key":"10.1016\/j.cub.2025.11.076_bib64","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1093\/evlett\/qrae006","article-title":"Resequencing of reindeer genomes provides clues to their docile habits","volume":"8","author":"Wu","year":"2024","journal-title":"Evol. Lett."},{"key":"10.1016\/j.cub.2025.11.076_bib65","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1111\/age.12119","article-title":"Genome-wide detection of signatures of selection in Korean Hanwoo cattle","volume":"45","author":"Porto-Neto","year":"2014","journal-title":"Anim. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib66","doi-asserted-by":"crossref","first-page":"360","DOI":"10.1038\/nature11837","article-title":"The genomic signature of dog domestication reveals adaptation to a starch-rich diet","volume":"495","author":"Axelsson","year":"2013","journal-title":"Nature"},{"key":"10.1016\/j.cub.2025.11.076_bib67","doi-asserted-by":"crossref","first-page":"2119","DOI":"10.1534\/genetics.106.063057","article-title":"Unexpected high polymorphism at the FABP4 gene unveils a complex history for pig populations","volume":"174","author":"Ojeda","year":"2006","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2025.11.076_bib68","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1038\/hdy.2015.70","article-title":"Genomic diversity and differentiation of a managed island wild boar population","volume":"116","author":"Iacolina","year":"2016","journal-title":"Heredity"},{"key":"10.1016\/j.cub.2025.11.076_bib69","doi-asserted-by":"crossref","first-page":"1074","DOI":"10.1126\/science.1253714","article-title":"Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication","volume":"345","author":"Carneiro","year":"2014","journal-title":"Science"},{"key":"10.1016\/j.cub.2025.11.076_bib70","doi-asserted-by":"crossref","DOI":"10.3389\/fevo.2020.00103","article-title":"The domestication makeup: Evolution, survival, and challenges","volume":"8","author":"Ahmad","year":"2020","journal-title":"Front. Ecol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib71","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1146\/annurev.ecolsys.27.1.83","article-title":"Extinction by hybridization and introgression","volume":"27","author":"Rhymer","year":"1996","journal-title":"Annu. Rev. Ecol. Syst."},{"key":"10.1016\/j.cub.2025.11.076_bib72","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1016\/S0169-5347(01)02290-X","article-title":"The problems with hybrids: setting conservation guidelines","volume":"16","author":"Allendorf","year":"2001","journal-title":"Trends Ecol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib73","doi-asserted-by":"crossref","first-page":"892","DOI":"10.1111\/eva.12367","article-title":"Hybridization and extinction","volume":"9","author":"Todesco","year":"2016","journal-title":"Evol. Appl."},{"key":"10.1016\/j.cub.2025.11.076_bib74","doi-asserted-by":"crossref","first-page":"828","DOI":"10.1007\/s10528-008-9197-z","article-title":"Novel SNPs of the bovine LEPR gene and their association with growth traits","volume":"46","author":"Guo","year":"2008","journal-title":"Biochem. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib75","first-page":"271","article-title":"The relationship between the T945M single nucleotide polymorphism in the leptin receptor gene (LEPR) and milk production traits in Jersey cows","volume":"24","author":"Komisarek","year":"2006","journal-title":"Anim. Sci. Pap. Rep."},{"key":"10.1016\/j.cub.2025.11.076_bib76","first-page":"783","article-title":"Genetic polymorphisms of leptin and leptin receptor genes in relation with production and reproduction traits in cattle","volume":"60","author":"Trakovick\u00e1","year":"2013","journal-title":"Acta Biochim. Pol."},{"key":"10.1016\/j.cub.2025.11.076_bib77","first-page":"133","article-title":"Impact of LEP and LEPR gene polymorphisms on functional traits in Polish Holstein-Friesian cattle","volume":"28","author":"Komisarek","year":"2010","journal-title":"Anim. Sci. Pap. Rep."},{"key":"10.1016\/j.cub.2025.11.076_bib78","article-title":"Genetic polymorphism and mRNA expression studies reveal IL6R and LEPR gene associations with reproductive traits in Chinese Holsteins","volume":"13","author":"Zhang","year":"2023","journal-title":"Agriculture"},{"key":"10.1016\/j.cub.2025.11.076_bib79","doi-asserted-by":"crossref","DOI":"10.3390\/ani10122448","article-title":"The LEPR gene is associated with reproductive seasonality traits in Rasa aragonesa sheep","volume":"10","author":"Lakhssassi","year":"2020","journal-title":"Animals"},{"key":"10.1016\/j.cub.2025.11.076_bib80","doi-asserted-by":"crossref","DOI":"10.1016\/j.psj.2023.103047","article-title":"Research Note: Association of LEPR gene polymorphism with growth and carcass traits in Savimalt and French Giant meat-type quails","volume":"102","author":"Wang","year":"2023","journal-title":"Poult. Sci."},{"key":"10.1016\/j.cub.2025.11.076_bib81","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1016\/j.anireprosci.2010.02.004","article-title":"Polymorphisms in the 5\u2032 upstream region of the FSH receptor gene, and their association with superovulation traits in Chinese Holstein cows","volume":"119","author":"Yang","year":"2010","journal-title":"Anim. Reprod. Sci."},{"key":"10.1016\/j.cub.2025.11.076_bib82","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1111\/j.1365-2052.2012.02380.x","article-title":"Identification of single nucleotide polymorphisms in the bovine follicle-stimulating hormone receptor and effects of genotypes on superovulatory response traits","volume":"44","author":"Cory","year":"2013","journal-title":"Anim. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib83","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1016\/j.anireprosci.2017.11.006","article-title":"Characterization of polymorphism in the FSH receptor gene and its impact on some reproductive indices in dairy cows","volume":"188","author":"Sharifiyazdi","year":"2018","journal-title":"Anim. Reprod. Sci."},{"key":"10.1016\/j.cub.2025.11.076_bib84","doi-asserted-by":"crossref","DOI":"10.1186\/s12917-025-04866-x","article-title":"Genetic analyses and molecular associations of FSHR and GH genes for semen traits in Egyptian buffalo","volume":"21","author":"Zaghloul","year":"2025","journal-title":"BMC Vet. Res."},{"key":"10.1016\/j.cub.2025.11.076_bib85","article-title":"Effect of GnRHR, BMP6 and FSHR gene pyramiding on litter traits of goats","volume":"15","author":"Yang","year":"2025","journal-title":"Animals"},{"key":"10.1016\/j.cub.2025.11.076_bib86","article-title":"Identification of candidate genes for reproductive traits in Xinjiang sheep breeds based on genomic structural variation","volume":"12","author":"Li","year":"2025","journal-title":"Front. Vet. Sci."},{"key":"10.1016\/j.cub.2025.11.076_bib87","doi-asserted-by":"crossref","first-page":"28","DOI":"10.23869\/bphjbr.20.1.20145","article-title":"The reproductive performance of Bali cattle and it\u2019s genetic variation","volume":"20","author":"Rahayu","year":"2014","journal-title":"J. Biol. Res."},{"key":"10.1016\/j.cub.2025.11.076_bib88","doi-asserted-by":"crossref","DOI":"10.3390\/ijms26178461","article-title":"A comprehensive review of the bovine immune response to pathogens","volume":"26","author":"Lesta","year":"2025","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.cub.2025.11.076_bib89","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1146\/annurev-ecolsys-110512-135813","article-title":"The evolution of animal domestication","volume":"45","author":"Larson","year":"2014","journal-title":"Annu. Rev. Ecol. Evol. Syst."},{"key":"10.1016\/j.cub.2025.11.076_bib90","doi-asserted-by":"crossref","first-page":"1553","DOI":"10.1093\/molbev\/msq336","article-title":"Domestication relaxed selective constraints on the yak mitochondrial genome","volume":"28","author":"Wang","year":"2011","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib91","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2104642118","article-title":"The crucial role of genome-wide genetic variation in conservation","volume":"118","author":"Kardos","year":"2021","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2025.11.076_bib92","doi-asserted-by":"crossref","first-page":"4147","DOI":"10.1111\/mec.16051","article-title":"The long-standing significance of genetic diversity in conservation","volume":"30","author":"DeWoody","year":"2021","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2025.11.076_bib93","doi-asserted-by":"crossref","first-page":"1322","DOI":"10.1038\/s41592-021-01299-w","article-title":"Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads","volume":"18","author":"Shafin","year":"2021","journal-title":"Nat. Methods"},{"key":"10.1016\/j.cub.2025.11.076_bib95","doi-asserted-by":"crossref","first-page":"2987","DOI":"10.1093\/bioinformatics\/btr509","article-title":"A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data","volume":"27","author":"Li","year":"2011","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib96","doi-asserted-by":"crossref","first-page":"2896","DOI":"10.1093\/bioinformatics\/btaa025","article-title":"Identifying and removing haplotypic duplication in primary genome assemblies","volume":"36","author":"Guan","year":"2020","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib97","article-title":"Haplotype-based variant detection from short-read sequencing","author":"Garrison","year":"2012","journal-title":"arXiv"},{"key":"10.1016\/j.cub.2025.11.076_bib98","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1038\/s41592-022-01445-y","article-title":"Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation","volume":"19","author":"Formenti","year":"2022","journal-title":"Nat. Methods"},{"key":"10.1016\/j.cub.2025.11.076_bib99","doi-asserted-by":"crossref","first-page":"3094","DOI":"10.1093\/bioinformatics\/bty191","article-title":"Minimap2: pairwise alignment for nucleotide sequences","volume":"34","author":"Li","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib100","doi-asserted-by":"crossref","DOI":"10.12688\/f1000research.12232.1","article-title":"BlobTools: Interrogation of genome assemblies","volume":"6","author":"Laetsch","year":"2017","journal-title":"F1000Res"},{"key":"10.1016\/j.cub.2025.11.076_bib101","doi-asserted-by":"crossref","first-page":"3210","DOI":"10.1093\/bioinformatics\/btv351","article-title":"BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs","volume":"31","author":"Sim\u00e3o","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib108","doi-asserted-by":"crossref","first-page":"3047","DOI":"10.1093\/bioinformatics\/btw354","article-title":"MultiQC: summarize analysis results for multiple tools and samples in a single report","volume":"32","author":"Ewels","year":"2016","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib109","doi-asserted-by":"crossref","first-page":"1056","DOI":"10.1038\/nprot.2014.063","article-title":"Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX","volume":"9","author":"Schubert","year":"2014","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.cub.2025.11.076_bib110","doi-asserted-by":"crossref","DOI":"10.1186\/s13104-016-1900-2","article-title":"AdapterRemoval v2: rapid adapter trimming, identification, and read merging","volume":"9","author":"Schubert","year":"2016","journal-title":"BMC Res. Notes"},{"key":"10.1016\/j.cub.2025.11.076_bib111","article-title":"Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM","author":"Li","year":"2013","journal-title":"arXiv"},{"key":"10.1016\/j.cub.2025.11.076_bib94","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The Sequence Alignment\/Map format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib112","doi-asserted-by":"crossref","first-page":"1682","DOI":"10.1093\/bioinformatics\/btt193","article-title":"mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters","volume":"29","author":"J\u00f3nsson","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib114","doi-asserted-by":"crossref","DOI":"10.1186\/s12859-014-0356-4","article-title":"ANGSD: Analysis of Next Generation Sequencing Data","volume":"15","author":"Korneliussen","year":"2014","journal-title":"BMC Bioinform."},{"key":"10.1016\/j.cub.2025.11.076_bib116","doi-asserted-by":"crossref","first-page":"4009","DOI":"10.1093\/bioinformatics\/btv509","article-title":"NgsRelate: a software tool for estimating pairwise relatedness from next-generation sequencing data","volume":"31","author":"Korneliussen","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib118","doi-asserted-by":"crossref","first-page":"3687","DOI":"10.1093\/bioinformatics\/btaa222","article-title":"GenMap: ultra-fast computation of genome mappability","volume":"36","author":"Pockrandt","year":"2020","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib119","doi-asserted-by":"crossref","first-page":"719","DOI":"10.1534\/genetics.118.301336","article-title":"Inferring population structure and admixture proportions in low-depth NGS data","volume":"210","author":"Meisner","year":"2018","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2025.11.076_bib124","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1016\/j.ajhg.2009.01.005","article-title":"A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals","volume":"84","author":"Browning","year":"2009","journal-title":"Am. J. Hum. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib125","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1534\/genetics.113.154138","article-title":"Estimating individual admixture proportions from next generation sequencing data","volume":"195","author":"Skotte","year":"2013","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2025.11.076_bib126","doi-asserted-by":"crossref","first-page":"936","DOI":"10.1111\/1755-0998.13171","article-title":"Evaluation of model fit of inferred admixture proportions","volume":"20","author":"Garcia-Erill","year":"2020","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2025.11.076_bib127","doi-asserted-by":"crossref","first-page":"1604","DOI":"10.1111\/1755-0998.13830","article-title":"Estimating admixture pedigrees of recent hybrids without a contiguous reference genome","volume":"23","author":"Garcia-Erill","year":"2023","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2025.11.076_bib128","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0037558","article-title":"SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data","volume":"7","author":"Nielsen","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.cub.2025.11.076_bib130","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1086\/519795","article-title":"PLINK: a tool set for whole-genome association and population-based linkage analyses","volume":"81","author":"Purcell","year":"2007","journal-title":"Am. J. Hum. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib131","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1002967","article-title":"Inference of population splits and mixtures from genome-wide allele frequency data","volume":"8","author":"Pickrell","year":"2012","journal-title":"PLoS Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib136","doi-asserted-by":"crossref","first-page":"1065","DOI":"10.1534\/genetics.112.145037","article-title":"Ancient admixture in human history","volume":"192","author":"Patterson","year":"2012","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2025.11.076_bib137","doi-asserted-by":"crossref","first-page":"3059","DOI":"10.1093\/nar\/gkf436","article-title":"MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform","volume":"30","author":"Katoh","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.cub.2025.11.076_bib139","doi-asserted-by":"crossref","first-page":"1110","DOI":"10.1111\/2041-210X.12410","article-title":"Popart: Full-feature software for haplotype network construction","volume":"6","author":"Leigh","year":"2015","journal-title":"Methods Ecol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib140","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1038\/nature10231","article-title":"Inference of human population history from individual whole-genome sequences","volume":"475","author":"Li","year":"2011","journal-title":"Nature"},{"key":"10.1016\/j.cub.2025.11.076_bib141","doi-asserted-by":"crossref","DOI":"10.1093\/genetics\/iyac148","article-title":"Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage","volume":"222","author":"Rasmussen","year":"2022","journal-title":"Genetics"},{"key":"10.1016\/j.cub.2025.11.076_bib142","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1038\/ng.3748","article-title":"Robust and scalable inference of population history from hundreds of unphased whole genomes","volume":"49","author":"Terhorst","year":"2017","journal-title":"Nat. Genet."},{"key":"10.1016\/j.cub.2025.11.076_bib143","doi-asserted-by":"crossref","first-page":"1176","DOI":"10.1093\/bioinformatics\/bts115","article-title":"rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure","volume":"28","author":"Gautier","year":"2012","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib145","doi-asserted-by":"crossref","first-page":"3855","DOI":"10.1093\/bioinformatics\/btz200","article-title":"ngsLD: evaluating linkage disequilibrium using genotype likelihoods","volume":"35","author":"Fox","year":"2019","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib144","unstructured":"Tange, O. (2024). GNU Parallel 20241222 (\u2019Bashar') [Stable]. Zenodo. https:\/\/doi.org\/10.5281\/ZENODO.14550073."},{"key":"10.1016\/j.cub.2025.11.076_bib147","series-title":"R: A language and environment for statistical computing","year":"2008"},{"key":"10.1016\/j.cub.2025.11.076_bib102","doi-asserted-by":"crossref","first-page":"742","DOI":"10.1111\/1755-0998.12623","article-title":"Combining bleach and mild predigestion improves ancient DNA recovery from bones","volume":"17","author":"Boessenkool","year":"2017","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.cub.2025.11.076_bib103","doi-asserted-by":"crossref","first-page":"1927","DOI":"10.1126\/science.1146971","article-title":"Whole-genome shotgun sequencing of mitochondria from ancient hair shafts","volume":"317","author":"Gilbert","year":"2007","journal-title":"Science"},{"key":"10.1016\/j.cub.2025.11.076_bib104","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1111\/2041-210X.12871","article-title":"Single-tube library preparation for degraded DNA","volume":"9","author":"Car\u00f8e","year":"2018","journal-title":"Methods Ecol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib105","doi-asserted-by":"crossref","first-page":"15758","DOI":"10.1073\/pnas.1314445110","article-title":"Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments","volume":"110","author":"Dabney","year":"2013","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.cub.2025.11.076_bib106","doi-asserted-by":"crossref","DOI":"10.1101\/pdb.prot5448","article-title":"Illumina sequencing library preparation for highly multiplexed target capture and sequencing","volume":"2010","author":"Meyer","year":"2010","journal-title":"Cold Spring Harb. Protoc."},{"key":"10.1016\/j.cub.2025.11.076_bib107","doi-asserted-by":"crossref","DOI":"10.1038\/ncomms6257","article-title":"Genome flux and stasis in a five millennium transect of European prehistory","volume":"5","author":"Gamba","year":"2014","journal-title":"Nat. Commun."},{"key":"10.1016\/j.cub.2025.11.076_bib113","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1038\/nature12323","article-title":"Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse","volume":"499","author":"Orlando","year":"2013","journal-title":"Nature"},{"key":"10.1016\/j.cub.2025.11.076_bib115","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1111\/mec.14954","article-title":"Allele frequency-free inference of close familial relationships from genotypes or low-depth sequencing data","volume":"28","author":"Waples","year":"2019","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.cub.2025.11.076_bib117","doi-asserted-by":"crossref","DOI":"10.1093\/gigascience\/giz034","article-title":"Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding","volume":"8","author":"Hangh\u00f8j","year":"2019","journal-title":"GigaScience"},{"key":"10.1016\/j.cub.2025.11.076_bib120","article-title":"Testing for Hardy\u2013Weinberg equilibrium in structured populations using genotype or low-depth next generation sequencing data","author":"Meisner","year":"2019","journal-title":"bioRxiv"},{"key":"10.1016\/j.cub.2025.11.076_bib121","doi-asserted-by":"crossref","first-page":"321","DOI":"10.1007\/BF02293557","article-title":"Determining the number of components from the matrix of partial correlations","volume":"41","author":"Velicer","year":"1976","journal-title":"Psychometrika"},{"key":"10.1016\/j.cub.2025.11.076_bib122","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/j.margen.2016.04.012","article-title":"Next-generation biology: Sequencing and data analysis approaches for non-model organisms","volume":"30","author":"da Fonseca","year":"2016","journal-title":"Mar. Genomics"},{"key":"10.1016\/j.cub.2025.11.076_bib123","doi-asserted-by":"crossref","DOI":"10.1093\/molbev\/msac134","article-title":"Warthog genomes resolve an evolutionary conundrum and reveal introgression of disease resistance genes","volume":"39","author":"Garcia-Erill","year":"2022","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib129","doi-asserted-by":"crossref","first-page":"1514","DOI":"10.1101\/gr.154831.113","article-title":"Estimating and interpreting FST: the impact of rare variants","volume":"23","author":"Bhatia","year":"2013","journal-title":"Genome Res."},{"key":"10.1016\/j.cub.2025.11.076_bib132","doi-asserted-by":"crossref","first-page":"710","DOI":"10.1126\/science.1188021","article-title":"A draft sequence of the Neandertal genome","volume":"328","author":"Green","year":"2010","journal-title":"Science"},{"key":"10.1016\/j.cub.2025.11.076_bib133","doi-asserted-by":"crossref","first-page":"2239","DOI":"10.1093\/molbev\/msr048","article-title":"Testing for ancient admixture between closely related populations","volume":"28","author":"Durand","year":"2011","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.cub.2025.11.076_bib134","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1023\/A:1008800423698","article-title":"Delete-m jackknife for unequal m","volume":"9","author":"Busing","year":"1999","journal-title":"Stat. Comput."},{"key":"10.1016\/j.cub.2025.11.076_bib135","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1146\/annurev.ps.46.020195.003021","article-title":"Multiple hypothesis testing","volume":"46","author":"Shaffer","year":"1995","journal-title":"Annu. Rev. Psychol."},{"key":"10.1016\/j.cub.2025.11.076_bib138","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1093\/bioinformatics\/btp033","article-title":"Jalview version 2\u2014a multiple sequence alignment editor and analysis workbench","volume":"25","author":"Waterhouse","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.cub.2025.11.076_bib146","doi-asserted-by":"crossref","first-page":"D523","DOI":"10.1093\/nar\/gkac1052","article-title":"UniProt: The universal protein knowledgebase in 2023","volume":"51","year":"2023","journal-title":"Nucleic Acids Res."}],"container-title":["Current Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982225016173?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0960982225016173?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,4,3]],"date-time":"2026-04-03T01:17:27Z","timestamp":1775179047000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0960982225016173"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1]]},"references-count":147,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2026,1]]}},"alternative-id":["S0960982225016173"],"URL":"https:\/\/doi.org\/10.1016\/j.cub.2025.11.076","relation":{},"ISSN":["0960-9822"],"issn-type":[{"value":"0960-9822","type":"print"}],"subject":[],"published":{"date-parts":[[2026,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Population structure and domestication history of the Javan banteng","name":"articletitle","label":"Article Title"},{"value":"Current Biology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.cub.2025.11.076","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 The Author(s). Published by Elsevier Inc.","name":"copyright","label":"Copyright"}]}}