{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T09:04:03Z","timestamp":1790672643445,"version":"4.1.0"},"reference-count":48,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2016,8,1]],"date-time":"2016-08-01T00:00:00Z","timestamp":1470009600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31370049"],"award-info":[{"award-number":["31370049"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004731","name":"Natural Science Foundation of Zhejiang Province","doi-asserted-by":"publisher","award":["LR14C040001"],"award-info":[{"award-number":["LR14C040001"]}],"id":[{"id":"10.13039\/501100004731","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Developmental & Comparative Immunology"],"published-print":{"date-parts":[[2016,8]]},"DOI":"10.1016\/j.dci.2016.03.011","type":"journal-article","created":{"date-parts":[[2016,3,12]],"date-time":"2016-03-12T08:02:02Z","timestamp":1457769722000},"page":"116-125","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":50,"special_numbering":"C","title":["A genome-wide survey of expansive NLR-C subfamily in miiuy croaker and characterization of the NLR-B30.2 genes"],"prefix":"10.1016","volume":"61","author":[{"given":"Jinrui","family":"Li","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qing","family":"Chu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tianjun","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.dci.2016.03.011_bib1","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.dci.2015.10.008","article-title":"Inflammatory immune response by lipopolysaccharide-responsive nucleotide binding oligomerization domain (NOD)-like receptors in the Japanese pufferfish (Takifugu rubripes)","volume":"55","author":"Biswas","year":"2016","journal-title":"Dev. Comp. Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib2","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1186\/1471-2105-4-29","article-title":"MatGAT: an application that generates similarity\/identity matrices using protein or DNA sequences","volume":"4","author":"Campanella","year":"2003","journal-title":"BMC Bioinforma."},{"key":"10.1016\/j.dci.2016.03.011_bib3","doi-asserted-by":"crossref","first-page":"9982","DOI":"10.1073\/pnas.0602081103","article-title":"The B30.2 domain of pyrin, the familial Mediterranean fever protein, interacts directly with caspase-1 to modulate IL-1\u03b2 production","volume":"103","author":"Chae","year":"2006","journal-title":"Proc. Natl. Acad. Sci."},{"key":"10.1016\/j.dci.2016.03.011_bib4","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1046\/j.1462-5822.2003.00304.x","article-title":"Nods, Nalps and Naip: intracellular regulators of bacterial-induced inflammation","volume":"5","author":"Chamaillard","year":"2003","journal-title":"Cell Microbiol."},{"key":"10.1016\/j.dci.2016.03.011_bib5","doi-asserted-by":"crossref","first-page":"e94046","DOI":"10.1371\/journal.pone.0094046","article-title":"Characterization of the miiuy croaker (Miichthys miiuy) transcriptome and development of immune-relevant genes and molecular markers","volume":"9","author":"Che","year":"2014","journal-title":"PloS One"},{"key":"10.1016\/j.dci.2016.03.011_bib6","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1016\/j.fsi.2009.09.012","article-title":"Molecular characterization and expression analysis of nuclear oligomerization domain proteins NOD1 and NOD2 in grass carp Ctenopharyngodon idella","volume":"28","author":"Chen","year":"2010","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib7","doi-asserted-by":"crossref","first-page":"718e724","DOI":"10.1016\/j.bse.2011.06.009","article-title":"Genetic diversity and population structure of miiuy croaker populations in east China sea revealed by the mitochondrial DNA control region sequence","volume":"39","author":"Cheng","year":"2011","journal-title":"Biochem. Syst. Ecol."},{"key":"10.1016\/j.dci.2016.03.011_bib8","doi-asserted-by":"crossref","first-page":"1250","DOI":"10.1038\/ni1412","article-title":"Nod-like proteins in immunity, inflammation and disease","volume":"7","author":"Fritz","year":"2006","journal-title":"Nat. Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib9","first-page":"329","article-title":"Pattern recognition receptors","volume":"5","author":"Hayashi","year":"2010","journal-title":"Nihon Rinsho Meneki Gakkai Kaishi"},{"key":"10.1016\/j.dci.2016.03.011_bib10","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1016\/j.ydbio.2006.08.065","article-title":"The immune gene repertoire encoded in the purple sea urchin genome","volume":"300","author":"Hibino","year":"2006","journal-title":"Dev. Biol."},{"key":"10.1016\/j.dci.2016.03.011_bib11","first-page":"027151","article-title":"Structure and evolutionary history of a large family of NLR proteins in the zebrafish","author":"Howe","year":"2015","journal-title":"BioRxiv"},{"key":"10.1016\/j.dci.2016.03.011_bib12","doi-asserted-by":"crossref","first-page":"297","DOI":"10.3389\/fimmu.2013.00297","article-title":"Evolution and conservation of plant NLR functions","volume":"4","author":"Jacob","year":"2013","journal-title":"Front. Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib13","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1038\/sj.icb.7100105","article-title":"Mammalian NLR proteins; discriminating foe from friend","volume":"85","author":"Kaparakis","year":"2007","journal-title":"Immunol. Cell Biol."},{"key":"10.1016\/j.dci.2016.03.011_bib14","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.dci.2016.03.011_bib15","article-title":"A\u00a0genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish","volume":"42","author":"Laing","year":"2008","journal-title":"BMC Evol. Biol."},{"key":"10.1016\/j.dci.2016.03.011_bib16","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1016\/j.ydbio.2006.08.048","article-title":"RTK and TGF-\u03b2 signaling pathways genes in the sea urchin genome","volume":"300","author":"Lapraz","year":"2006","journal-title":"Dev. Biol."},{"key":"10.1016\/j.dci.2016.03.011_bib17","doi-asserted-by":"crossref","first-page":"D257","DOI":"10.1093\/nar\/gkj079","article-title":"SMART 5: domains in the context of genomes and networks","volume":"34","author":"Letunic","year":"2006","journal-title":"Nucleic. Acids. Res."},{"key":"10.1016\/j.dci.2016.03.011_bib18","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.1016\/j.fsi.2012.06.033","article-title":"Expression profiles of NODs in channel catfish (Ictalurus punctatus) after infection with Edwardsiella tarda, Aeromonas hydrophila, Streptococcus iniae and channel catfish hemorrhage reovirus","volume":"33","author":"Li","year":"2012","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib19","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1016\/j.fsi.2015.06.026","article-title":"Comparative genomic and evolution of vertebrate NOD1 and NOD2 genes and their immune response in miiuy croaker","volume":"46","author":"Li","year":"2015","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib20","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1016\/j.fsi.2015.09.024","article-title":"Characterization of NLR-A subfamily members in miiuy croaker and comparative genomics revealed NLRX1 underwent duplication and lose in actinopterygii","volume":"47","author":"Li","year":"2015","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib21","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1006\/meth.2001.1262","article-title":"Analysis of relative gene expression data using real-time quantitative PCR and the 2 (-Delta Delta C (T)) method","volume":"25","author":"Litvak","year":"2001","journal-title":"Methods"},{"key":"10.1016\/j.dci.2016.03.011_bib22","doi-asserted-by":"crossref","first-page":"e66859","DOI":"10.1371\/journal.pone.0066859","article-title":"Lineage-specific expansion of IFIT gene family: an insight into coevolution with IFN gene family","volume":"8","author":"Liu","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.dci.2016.03.011_bib23","doi-asserted-by":"crossref","first-page":"1007","DOI":"10.1007\/s10695-012-9758-2","article-title":"Identification of MDP (muramyl dipeptide)-binding key domains in NOD2 (nucleotide-binding and oligomerization domain-2) receptor of Labeo rohita","volume":"39","author":"Maharana","year":"2013","journal-title":"Fish. Physiol. Biochem."},{"key":"10.1016\/j.dci.2016.03.011_bib24","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1038\/nature04946","article-title":"Intracellular pattern recognition receptors in the host response","volume":"442","author":"Meylan","year":"2006","journal-title":"Nature"},{"key":"10.1016\/j.dci.2016.03.011_bib25","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1016\/j.dci.2011.12.005","article-title":"Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors","volume":"37","author":"Rajendran","year":"2012","journal-title":"Dev. Comp. Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib26","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1111\/j.1365-2567.2005.02248.x","article-title":"Relationship between SPRY and B30. 2 protein domains. Evolution of a component of immune defence?","volume":"116","author":"Rhodes","year":"2005","journal-title":"Immunol"},{"key":"10.1016\/j.dci.2016.03.011_bib27","doi-asserted-by":"crossref","first-page":"991","DOI":"10.1016\/j.dci.2009.04.004","article-title":"NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish","volume":"33","author":"Sha","year":"2009","journal-title":"Dev. Comp. Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib28","doi-asserted-by":"crossref","first-page":"1342","DOI":"10.1016\/j.celrep.2013.11.004","article-title":"An anti-inflammatory NOD-like receptor is required for microglia development","volume":"5","author":"Shiau","year":"2013","journal-title":"Cell Rep."},{"key":"10.1016\/j.dci.2016.03.011_bib29","doi-asserted-by":"crossref","first-page":"415","DOI":"10.1038\/ng.2568","article-title":"Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution","volume":"45","author":"Smith","year":"2013","journal-title":"Nat. Genet."},{"key":"10.1016\/j.dci.2016.03.011_bib30","doi-asserted-by":"crossref","first-page":"6111","DOI":"10.1128\/JVI.79.10.6111-6121.2005","article-title":"The B30. 2 (SPRY) domain of the retroviral restriction factor TRIM5\u03b1 exhibits lineage-specific length and sequence variation in primates","volume":"79","author":"Song","year":"2005","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.dci.2016.03.011_bib31","doi-asserted-by":"crossref","first-page":"3139","DOI":"10.1128\/JVI.79.5.3139-3145.2005","article-title":"Species-specific variation in the B30. 2 (SPRY) domain of TRIM5\u03b1 determines the potency of human immunodeficiency virus restriction","volume":"79","author":"Stremlau","year":"2005","journal-title":"J.\u00a0Virol."},{"key":"10.1016\/j.dci.2016.03.011_bib32","doi-asserted-by":"crossref","first-page":"e43936","DOI":"10.1371\/journal.pone.0043936","article-title":"Miiuy croaker transferrin gene and evidence for positive selection events reveal different evolutionary patterns","volume":"7","author":"Sun","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.dci.2016.03.011_bib33","doi-asserted-by":"crossref","first-page":"2731","DOI":"10.1093\/molbev\/msr121","article-title":"MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods","volume":"28","author":"Tamura","year":"2011","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.dci.2016.03.011_bib34","doi-asserted-by":"crossref","first-page":"202","DOI":"10.1016\/j.fsi.2011.05.007","article-title":"Molecular characterization, expression and functional analysis of a nuclear oligomerization domain proteins subfamily C (NLRC) in Japanese flounder (Paralichthys olivaceus)","volume":"31","author":"Unajak","year":"2011","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib35","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/1741-7007-7-7","article-title":"A\u00a0large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish","volume":"7","author":"Van Der Aa","year":"2009","journal-title":"BMC Biol."},{"key":"10.1016\/j.dci.2016.03.011_bib36","doi-asserted-by":"crossref","first-page":"2040","DOI":"10.1016\/j.fsi.2013.10.018","article-title":"The evolutionary analysis on complement genes reveals that fishes C3 and C9 experience different evolutionary patterns","volume":"35","author":"Wang","year":"2013","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib37","doi-asserted-by":"crossref","first-page":"672","DOI":"10.1016\/j.fsi.2015.05.042","article-title":"Characterization and evolutionary analysis of duplicated C7 in miiuy croaker","volume":"45","author":"Wang","year":"2015","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib38","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1189\/jlb.0607402","article-title":"NLR proteins: integral members of innate immunity and mediators of inflammatory diseases","volume":"83","author":"Wilmanski","year":"2008","journal-title":"J.\u00a0Leukoc. Biol."},{"key":"10.1016\/j.dci.2016.03.011_bib39","series-title":"DNAMAN for Windows, Version 2.6, Lynon Biosoft","author":"Woffelman","year":"1994"},{"key":"10.1016\/j.dci.2016.03.011_bib40","doi-asserted-by":"crossref","first-page":"1353","DOI":"10.1038\/sj.emboj.7600994","article-title":"Structural and functional insights into the B30. 2\/SPRY domain","volume":"6","author":"Woo","year":"2006","journal-title":"EMBO J."},{"key":"10.1016\/j.dci.2016.03.011_bib41","doi-asserted-by":"crossref","first-page":"1099e1105","DOI":"10.1016\/j.fsi.2010.08.013","article-title":"Identification of immune genes of the miiuy croaker (Miichthys miiuy) by sequencing and bioinformatic analysis of ESTs","volume":"29","author":"Xu","year":"2010","journal-title":"Fish. Shellfish Immunol."},{"key":"10.1016\/j.dci.2016.03.011_bib42","doi-asserted-by":"crossref","first-page":"25e32","DOI":"10.1016\/j.aquaculture.2011.04.034","article-title":"Molecular cloning, characterization, and expression analysis of a disease-resistance related CC chemokine gene in miiuy croaker (miichthys miiuy)","volume":"318","author":"Xu","year":"2011","journal-title":"Aquaculture"},{"key":"10.1016\/j.dci.2016.03.011_bib43","doi-asserted-by":"crossref","first-page":"e35449","DOI":"10.1371\/journal.pone.0035449","article-title":"Miiuy croaker hepcidin gene and comparative analyses reveal evidence for positive selection","volume":"7","author":"Xu","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.dci.2016.03.011_bib48","doi-asserted-by":"crossref","first-page":"21902","DOI":"10.1038\/srep21902","article-title":"The genome of the miiuy croaker reveals well-developed innate immune and sensory systems","volume":"6","author":"Xu","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.dci.2016.03.011_bib44","doi-asserted-by":"crossref","first-page":"1586","DOI":"10.1093\/molbev\/msm088","article-title":"PAML 4: phylogenetic analysis by maximum likelihood","volume":"24","author":"Yang","year":"2007","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.dci.2016.03.011_bib45","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1093\/molbev\/mst174","article-title":"The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals","volume":"31","author":"Yuen","year":"2014","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.dci.2016.03.011_bib46","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1007\/s00251-010-0428-1","article-title":"Domain architecture evolution of pattern-recognition receptors","volume":"62","author":"Zhang","year":"2010","journal-title":"Immunogenetics"},{"key":"10.1016\/j.dci.2016.03.011_bib47","doi-asserted-by":"crossref","first-page":"631","DOI":"10.1016\/j.dci.2013.06.015","article-title":"Characterization of the CCR3 and CCR9 Genes in Miiuy Croaker and different selection pressures imposed on different domains between mammals and teleosts","volume":"41","author":"Zhu","year":"2013","journal-title":"Dev. Comp. Immunol."}],"container-title":["Developmental & Comparative Immunology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0145305X1630091X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0145305X1630091X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,6,14]],"date-time":"2024-06-14T23:52:04Z","timestamp":1718409124000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0145305X1630091X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,8]]},"references-count":48,"alternative-id":["S0145305X1630091X"],"URL":"https:\/\/doi.org\/10.1016\/j.dci.2016.03.011","relation":{},"ISSN":["0145-305X"],"issn-type":[{"value":"0145-305X","type":"print"}],"subject":[],"published":{"date-parts":[[2016,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A genome-wide survey of expansive NLR-C subfamily in miiuy croaker and characterization of the NLR-B30.2 genes","name":"articletitle","label":"Article Title"},{"value":"Developmental & Comparative Immunology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.dci.2016.03.011","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2016 Elsevier Ltd. All rights reserved.","name":"copyright","label":"Copyright"}]}}