{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T20:38:32Z","timestamp":1790282312140,"version":"4.1.0"},"reference-count":67,"publisher":"Elsevier BV","issue":"16","license":[{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,8,1]],"date-time":"2024-08-01T00:00:00Z","timestamp":1722470400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,7,17]],"date-time":"2024-07-17T00:00:00Z","timestamp":1721174400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Developmental Cell"],"published-print":{"date-parts":[[2024,8]]},"DOI":"10.1016\/j.devcel.2024.07.007","type":"journal-article","created":{"date-parts":[[2024,8,5]],"date-time":"2024-08-05T10:35:36Z","timestamp":1722854136000},"page":"2171-2188.e7","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":26,"title":["A single-cell transcriptomic map of the developing Atoh1 lineage identifies neural fate decisions and neuronal diversity in the hindbrain"],"prefix":"10.1016","volume":"59","author":[{"given":"Jessica C.","family":"Butts","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sih-Rong","family":"Wu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark A.","family":"Durham","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ryan S.","family":"Dhindsa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean-Pierre","family":"Revelli","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M. Cecilia","family":"Ljungberg","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olivier","family":"Saulnier","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Madison E.","family":"McLaren","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael D.","family":"Taylor","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huda Y.","family":"Zoghbi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.devcel.2024.07.007_bib1","doi-asserted-by":"crossref","first-page":"169","DOI":"10.1038\/36579","article-title":"Math1 is essential for genesis of cerebellar granule neurons","volume":"390","author":"Ben-Arie","year":"1997","journal-title":"Nature"},{"key":"10.1016\/j.devcel.2024.07.007_bib2","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1016\/j.neuron.2005.08.024","article-title":"Math1 Expression Redefines the Rhombic Lip Derivatives and Reveals Novel Lineages within the Brainstem and Cerebellum","volume":"48","author":"Wang","year":"2005","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib3","doi-asserted-by":"crossref","first-page":"22462","DOI":"10.1073\/pnas.0911579106","article-title":"Excitatory neurons of the proprioceptive, interoceptive, and arousal hindbrain networks share a developmental requirement for Math1","volume":"106","author":"Rose","year":"2009","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.devcel.2024.07.007_bib4","doi-asserted-by":"crossref","first-page":"1039","DOI":"10.1242\/dev.127.5.1039","article-title":"Functional conservation of atonal and Math1 in the CNS and PNS","volume":"127","author":"Ben-Arie","year":"2000","journal-title":"Development"},{"key":"10.1016\/j.devcel.2024.07.007_bib5","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1016\/S0896-6273(01)00305-1","article-title":"Proprioceptor pathway development is dependent on MATH1","volume":"30","author":"Bermingham","year":"2001","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib6","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1016\/j.neuron.2005.08.028","article-title":"Math1 is expressed in temporally discrete pools of cerebellar rhombic-lip neural progenitors","volume":"48","author":"MacHold","year":"2005","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib7","doi-asserted-by":"crossref","first-page":"9184","DOI":"10.1523\/JNEUROSCI.1610-06.2006","article-title":"Unipolar brush cells of the cerebellum are produced in the rhombic lip and migrate through developing white matter","volume":"26","author":"Englund","year":"2006","journal-title":"J.\u00a0Neurosci."},{"key":"10.1016\/j.devcel.2024.07.007_bib8","doi-asserted-by":"crossref","DOI":"10.1212\/NXG.0000000000000677","article-title":"Biallelic ATOH1 Gene Variant in Siblings With Pontocerebellar Hypoplasia, Developmental Delay, and Hearing Loss","volume":"8","author":"Vi\u0161njar","year":"2022","journal-title":"Neurol. Genet."},{"key":"10.1016\/j.devcel.2024.07.007_bib9","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.31181","article-title":"Jak2-mediated phosphorylation of atoh1 is critical for medulloblastoma growth","volume":"6","author":"Klisch","year":"2017","journal-title":"eLife"},{"key":"10.1016\/j.devcel.2024.07.007_bib10","doi-asserted-by":"crossref","first-page":"1207","DOI":"10.1093\/hmg\/5.9.1207","article-title":"Evolutionary conservation of sequence and expression of the bHLH protein Atonal suggests a conserved role in neurogenesis","volume":"5","author":"Ben-Arie","year":"1996","journal-title":"Hum. Mol. Genet."},{"key":"10.1016\/j.devcel.2024.07.007_bib11","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1016\/j.neuron.2009.10.023","article-title":"Math1 Is Essential for the Development of Hindbrain Neurons Critical for Perinatal Breathing","volume":"64","author":"Rose","year":"2009","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib12","series-title":"Nuclear Derivatives and Axonal Projections Originating from Rhombomere 4 in the Mouse Hindbrain","author":"Di Bonito","year":"2017"},{"key":"10.1016\/j.devcel.2024.07.007_bib13","doi-asserted-by":"crossref","first-page":"18","DOI":"10.3389\/fncir.2017.00018","article-title":"Cellular and molecular underpinnings of neuronal assembly in the central auditory system during mouse development","volume":"11","author":"Di Bonito","year":"2017","journal-title":"Front. Neural Circuits"},{"key":"10.1016\/j.devcel.2024.07.007_bib14","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1003249","article-title":"Assembly of the Auditory Circuitry by a Hox Genetic Network in the Mouse Brainstem","volume":"9","author":"Di Bonito","year":"2013","journal-title":"PLoS Genet."},{"key":"10.1016\/j.devcel.2024.07.007_bib15","doi-asserted-by":"crossref","first-page":"1348","DOI":"10.1002\/dvdy.24055","article-title":"Hox genes and region-specific sensorimotor circuit formation in the hindbrain and spinal cord","volume":"242","author":"Di Bonito","year":"2013","journal-title":"Dev. Dyn."},{"key":"10.1016\/j.devcel.2024.07.007_bib16","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1038\/s41586-019-0969-x","article-title":"The single-cell transcriptional landscape of mammalian organogenesis","volume":"566","author":"Cao","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.devcel.2024.07.007_bib17","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1038\/s41586-023-06812-z","article-title":"A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain","volume":"624","author":"Yao","year":"2023","journal-title":"Nature"},{"key":"10.1016\/j.devcel.2024.07.007_bib18","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1002\/dvg.20633","article-title":"Generation and characterization of Atoh1-Cre knock-in mouse line","volume":"48","author":"Yang","year":"2010","journal-title":"Genesis"},{"key":"10.1016\/j.devcel.2024.07.007_bib19","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.38455","article-title":"Loss of Atoh1 from neurons regulating hypoxic and hypercapnic chemoresponses causes neonatal respiratory failure in mice","volume":"7","author":"van der Heijden","year":"2018","journal-title":"eLife"},{"key":"10.1016\/j.devcel.2024.07.007_bib20","doi-asserted-by":"crossref","first-page":"329","DOI":"10.1016\/j.cels.2019.03.003","article-title":"DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors","volume":"8","author":"McGinnis","year":"2019","journal-title":"Cell Syst."},{"key":"10.1016\/j.devcel.2024.07.007_bib21","doi-asserted-by":"crossref","first-page":"861","DOI":"10.21105\/joss.00861","article-title":"UMAP: Uniform Manifold Approximation and Projection","volume":"3","author":"McInnes","year":"2018","journal-title":"J.\u00a0Open Source Softw."},{"key":"10.1016\/j.devcel.2024.07.007_bib22","doi-asserted-by":"crossref","first-page":"2147","DOI":"10.1242\/dev.01781","article-title":"Commissural neuron identity is specified by a homeodomain protein, Mbh1, that is directly downstream of Math1","volume":"132","author":"Saba","year":"2005","journal-title":"Development"},{"key":"10.1016\/j.devcel.2024.07.007_bib23","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1016\/j.neuron.2005.11.031","article-title":"Hindbrain rhombic lip is comprised of discrete progenitor cell populations allocated by Pax6","volume":"48","author":"Landsberg","year":"2005","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib24","doi-asserted-by":"crossref","first-page":"749","DOI":"10.1016\/S0896-6273(03)00497-5","article-title":"SOX2 Functions to Maintain Neural Progenitor Identity","volume":"39","author":"Graham","year":"2003","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib25","doi-asserted-by":"crossref","first-page":"2061","DOI":"10.1111\/j.1471-4159.2007.04694.x","article-title":"NSCL-1 and -2 control the formation of precerebellar nuclei by orchestrating the migration of neuronal precursor cells","volume":"102","author":"Schmid","year":"2007","journal-title":"J.\u00a0Neurochem."},{"key":"10.1016\/j.devcel.2024.07.007_bib26","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1016\/S0070-2153(09)88004-6","article-title":"Hox genes and segmentation of the vertebrate hindbrain","volume":"88","author":"T\u00fcmpel","year":"2009","journal-title":"Curr. Top. Dev. Biol."},{"key":"10.1016\/j.devcel.2024.07.007_bib27","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1016\/j.neuron.2004.07.010","article-title":"Cell behaviors and genetic lineages of the mesencephalon and rhombomere 1","volume":"43","author":"Zervas","year":"2004","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib28","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pbio.3001450","article-title":"A shared transcriptional code orchestrates temporal patterning of the central nervous system","volume":"19","author":"Sagner","year":"2021","journal-title":"PLoS Biol."},{"key":"10.1016\/j.devcel.2024.07.007_bib29","doi-asserted-by":"crossref","first-page":"1034","DOI":"10.1016\/j.neuron.2016.07.002","article-title":"Expression of C1ql3 in Discrete Neuronal Populations Controls Efferent Synapse Numbers and Diverse Behaviors","volume":"91","author":"Martinelli","year":"2016","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib30","doi-asserted-by":"crossref","first-page":"2155","DOI":"10.1126\/science.1065718","article-title":"Requirement of Math1 for Secretory Cell Lineage Commitment in the Mouse Intestine","volume":"294","author":"Yang","year":"2001","journal-title":"Science"},{"key":"10.1016\/j.devcel.2024.07.007_bib31","doi-asserted-by":"crossref","first-page":"1837","DOI":"10.1126\/science.284.5421.1837","article-title":"Math1: an essential gene for the generation of inner ear hair cells","volume":"284","author":"Bermingham","year":"1999","journal-title":"Science"},{"key":"10.1016\/j.devcel.2024.07.007_bib32","doi-asserted-by":"crossref","first-page":"3288","DOI":"10.1073\/pnas.1100230108","article-title":"In\u00a0vivo Atoh1 targetome reveals how a proneural transcription factor regulates cerebellar development","volume":"108","author":"Klisch","year":"2011","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.devcel.2024.07.007_bib33","doi-asserted-by":"crossref","first-page":"10859","DOI":"10.1523\/JNEUROSCI.0445-11.2011","article-title":"In\u00a0vivo neuronal subtype-specific targets of Atoh1 (Math1) in dorsal spinal cord","volume":"31","author":"Lai","year":"2011","journal-title":"J.\u00a0Neurosci."},{"key":"10.1016\/j.devcel.2024.07.007_bib34","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.21856","article-title":"An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites","volume":"6","author":"Skene","year":"2017","journal-title":"eLife"},{"key":"10.1016\/j.devcel.2024.07.007_bib35","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1073\/pnas.2105137118","article-title":"POU4F3 pioneer activity enables ATOH1 to drive diverse mechanoreceptor differentiation through a feed-forward epigenetic mechanism","volume":"118","author":"Yu","year":"2021","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"10.1016\/j.devcel.2024.07.007_bib36","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1126\/science.aad0501","article-title":"Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq","volume":"352","author":"Tirosh","year":"2016","journal-title":"Science"},{"key":"10.1016\/j.devcel.2024.07.007_bib37","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1002\/cne.21461","article-title":"The derivatives of the Wnt3a lineage in the central nervous system","volume":"504","author":"Louvi","year":"2007","journal-title":"J.\u00a0Comp. Neurol."},{"key":"10.1016\/j.devcel.2024.07.007_bib38","doi-asserted-by":"crossref","first-page":"454","DOI":"10.1126\/science.aax7526","article-title":"Spatiotemporal expansion of primary progenitor zones in the developing human cerebellum","volume":"366","author":"Haldipur","year":"2019","journal-title":"Science"},{"key":"10.1016\/j.devcel.2024.07.007_bib39","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1038\/s41586-022-05215-w","article-title":"Failure of human rhombic lip differentiation underlies medulloblastoma formation","volume":"609","author":"Hendrikse","year":"2022","journal-title":"Nature"},{"key":"10.1016\/j.devcel.2024.07.007_bib40","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1038\/s41586-019-1434-6","article-title":"Resolving medulloblastoma cellular architecture by single-cell genomics","volume":"572","author":"Hovestadt","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.devcel.2024.07.007_bib41","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1038\/s41586-019-1158-7","article-title":"Childhood cerebellar tumours mirror conserved fetal transcriptional programs","volume":"572","author":"Vladoiu","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.devcel.2024.07.007_bib42","doi-asserted-by":"crossref","first-page":"1012","DOI":"10.1038\/s41586-022-05208-9","article-title":"Unified rhombic lip origins of group 3 and group 4 medulloblastoma","volume":"609","author":"Smith","year":"2022","journal-title":"Nature"},{"key":"10.1016\/j.devcel.2024.07.007_bib43","doi-asserted-by":"crossref","first-page":"2781","DOI":"10.1126\/sciadv.abd2781","article-title":"Notch1 switches progenitor competence in inducing medulloblastoma","volume":"7","author":"Ballabio","year":"2021","journal-title":"Sci. Adv."},{"key":"10.1016\/j.devcel.2024.07.007_bib44","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.26402","article-title":"Evolutionary changes in transcription factor coding sequence quantitatively alter sensory organ development and function","volume":"6","author":"Weinberger","year":"2017","journal-title":"eLife"},{"key":"10.1016\/j.devcel.2024.07.007_bib45","doi-asserted-by":"crossref","first-page":"1163","DOI":"10.1038\/s41593-021-00872-y","article-title":"Spatial and cell type transcriptional landscape of human cerebellar development","volume":"24","author":"Aldinger","year":"2021","journal-title":"Nat. Neurosci."},{"key":"10.1016\/j.devcel.2024.07.007_bib46","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1126\/science.1229326","article-title":"Ezh2 orchestrates topographic migration and connectivity of mouse precerebellar neurons","volume":"339","author":"Di Meglio","year":"2013","journal-title":"Science"},{"key":"10.1016\/j.devcel.2024.07.007_bib47","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1038\/nmeth.2019","article-title":"Fiji: an open-source platform for biological-image analysis","volume":"9","author":"Schindelin","year":"2012","journal-title":"Nat. Methods"},{"key":"10.1016\/j.devcel.2024.07.007_bib48","doi-asserted-by":"crossref","first-page":"381","DOI":"10.1038\/nbt.2859","article-title":"The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells","volume":"32","author":"Trapnell","year":"2014","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.devcel.2024.07.007_bib49","doi-asserted-by":"crossref","first-page":"3573","DOI":"10.1016\/j.cell.2021.04.048","article-title":"Integrated analysis of multimodal single-cell data","volume":"184","author":"Hao","year":"2021","journal-title":"Cell"},{"key":"10.1016\/j.devcel.2024.07.007_bib50","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1093\/bioinformatics\/btq033","article-title":"BEDTools: a flexible suite of utilities for comparing genomic features","volume":"26","author":"Quinlan","year":"2010","journal-title":"Bioinformatics"},{"key":"10.1016\/j.devcel.2024.07.007_bib51","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: A flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.devcel.2024.07.007_bib52","series-title":"MACSr: MACS: Model-based Analysis for ChIP-Seq","author":"Hu","year":"2022"},{"key":"10.1016\/j.devcel.2024.07.007_bib53","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1038\/nbt.1754","article-title":"Integrative genomics viewer","volume":"29","author":"Robinson","year":"2011","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.devcel.2024.07.007_bib54","doi-asserted-by":"crossref","first-page":"W39","DOI":"10.1093\/nar\/gkv416","article-title":"The MEME suite","volume":"43","author":"Bailey","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.devcel.2024.07.007_bib55","doi-asserted-by":"crossref","first-page":"3227","DOI":"10.1016\/j.celrep.2017.03.004","article-title":"Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity","volume":"18","author":"Chen","year":"2017","journal-title":"Cell Rep."},{"key":"10.1016\/j.devcel.2024.07.007_bib56","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1016\/j.neuron.2022.11.016","article-title":"Disruption of the ATXN1-CIC complex reveals the role of additional nuclear ATXN1 interactors in spinocerebellar ataxia type 1","volume":"111","author":"Coffin","year":"2023","journal-title":"Neuron"},{"key":"10.1016\/j.devcel.2024.07.007_bib57","doi-asserted-by":"crossref","first-page":"18631","DOI":"10.1038\/srep18631","article-title":"ACT-PRESTO: Rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging","volume":"6","author":"Lee","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.devcel.2024.07.007_bib58","doi-asserted-by":"crossref","DOI":"10.3389\/fncel.2021.684792","article-title":"Passive Clearing and 3D Lightsheet Imaging of the Intact and Injured Spinal Cord in Mice","volume":"15","author":"McCreedy","year":"2021","journal-title":"Front. Cell. Neurosci."},{"key":"10.1016\/j.devcel.2024.07.007_bib59","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.77419","article-title":"EZ Clear for simple, rapid, and robust mouse whole organ clearing","volume":"11","author":"Hsu","year":"2022","journal-title":"eLife"},{"key":"10.1016\/j.devcel.2024.07.007_bib60","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1002\/dvdy.20441","article-title":"Comprehensive expression atlas of fibroblast growth\u00a0factors and their receptors generated by a novel robotic in\u00a0situ hybridization platform","volume":"234","author":"Yaylaoglu","year":"2005","journal-title":"Dev. Dyn."},{"key":"10.1016\/j.devcel.2024.07.007_bib61","first-page":"1","article-title":"Fitting linear mixed-effects models using lme4","volume":"67","author":"Bates","year":"2015","journal-title":"J.\u00a0Stat. Soft."},{"key":"10.1016\/j.devcel.2024.07.007_bib62","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1186\/s13059-019-1874-1","article-title":"Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression","volume":"20","author":"Hafemeister","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.devcel.2024.07.007_bib63","doi-asserted-by":"crossref","first-page":"128","DOI":"10.1186\/1471-2105-14-128","article-title":"Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool","volume":"14","author":"Chen","year":"2013","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.devcel.2024.07.007_bib64","doi-asserted-by":"crossref","first-page":"W90","DOI":"10.1093\/nar\/gkw377","article-title":"Enrichr: a comprehensive gene set enrichment analysis web server 2016 update","volume":"44","author":"Kuleshov","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.devcel.2024.07.007_bib65","doi-asserted-by":"crossref","DOI":"10.1002\/cpz1.90","article-title":"Gene Set Knowledge Discovery with Enrichr","volume":"1","author":"Xie","year":"2021","journal-title":"Curr. Protoc."},{"key":"10.1016\/j.devcel.2024.07.007_bib66","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1186\/s13059-019-1802-4","article-title":"CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis","volume":"20","author":"Zhu","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.devcel.2024.07.007_bib67","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The Sequence Alignment\/Map format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"}],"container-title":["Developmental Cell"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S153458072400443X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S153458072400443X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,7,13]],"date-time":"2026-07-13T12:23:54Z","timestamp":1783945434000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S153458072400443X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,8]]},"references-count":67,"journal-issue":{"issue":"16","published-print":{"date-parts":[[2024,8]]}},"alternative-id":["S153458072400443X"],"URL":"https:\/\/doi.org\/10.1016\/j.devcel.2024.07.007","relation":{},"ISSN":["1534-5807"],"issn-type":[{"value":"1534-5807","type":"print"}],"subject":[],"published":{"date-parts":[[2024,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A single-cell transcriptomic map of the developing Atoh1 lineage identifies neural fate decisions and neuronal diversity in the hindbrain","name":"articletitle","label":"Article Title"},{"value":"Developmental Cell","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.devcel.2024.07.007","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Authors. Published by Elsevier Inc.","name":"copyright","label":"Copyright"}]}}