{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,29]],"date-time":"2026-08-29T05:38:22Z","timestamp":1787981902413,"version":"build-2784847793"},"reference-count":62,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2024,12,1]],"date-time":"2024-12-01T00:00:00Z","timestamp":1733011200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,12,1]],"date-time":"2024-12-01T00:00:00Z","timestamp":1733011200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,9,11]],"date-time":"2024-09-11T00:00:00Z","timestamp":1726012800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000897","name":"Cystic Fibrosis Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000897","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["clinicalkey.fr","clinicalkey.jp","clinicalkey.es","clinicalkey.com.au","clinicalkey.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Diagnostic Microbiology and Infectious Disease"],"published-print":{"date-parts":[[2024,12]]},"DOI":"10.1016\/j.diagmicrobio.2024.116526","type":"journal-article","created":{"date-parts":[[2024,9,11]],"date-time":"2024-09-11T16:36:43Z","timestamp":1726072603000},"page":"116526","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":9,"title":["Evaluation of the GenoType NTM-DR line probe assay for nontuberculous mycobacteria using whole genome sequences as reference standard"],"prefix":"10.1016","volume":"110","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6715-1001","authenticated-orcid":false,"given":"L. Elaine","family":"Epperson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rebecca M.","family":"Davidson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sara M.","family":"Kammlade","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nabeeh A.","family":"Hasan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sophie E.","family":"Nick","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Iara M.P.","family":"Machado","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Valerie H.","family":"Rodriguez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aaron","family":"Appleman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Niels K.","family":"Helstrom","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael","family":"Strong","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0001","first-page":"1458","article-title":"The burden of pulmonary nontuberculous mycobacterial disease in the United States","volume":"12","author":"Strollo","year":"2015"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0002","first-page":"1655","article-title":"Geographic Distribution of Nontuberculous Mycobacterial Species Identified among Clinical Isolates in the United States, 2009-2013","volume":"14","author":"Spaulding","year":"2017"},{"issue":"7","key":"10.1016\/j.diagmicrobio.2024.116526_bib0003","doi-asserted-by":"crossref","first-page":"970","DOI":"10.1164\/rccm.201002-0310OC","article-title":"Nontuberculous mycobacterial lung disease prevalence at four integrated health care delivery systems","volume":"182","author":"Prevots","year":"2010","journal-title":"Am J Respir Crit Care Med"},{"issue":"7","key":"10.1016\/j.diagmicrobio.2024.116526_bib0004","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1164\/rccm.201003-0503OC","article-title":"Pulmonary nontuberculous mycobacterial disease prevalence and clinical features: an emerging public health disease","volume":"182","author":"Winthrop","year":"2010","journal-title":"Am J Respir Crit Care Med"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0005","article-title":"Variability in the management of adults with pulmonary nontuberculous mycobacterial disease","author":"Abate","year":"2020","journal-title":"Clin Infect Dis"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0006","unstructured":"Foundation, C.C.F., 2018 Patient registry annual data report. 2018."},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0007","unstructured":"Foundation, C.C.F., 2019 Patient registry annual data report. 2019."},{"issue":"1","key":"10.1016\/j.diagmicrobio.2024.116526_bib0008","doi-asserted-by":"crossref","DOI":"10.1183\/13993003.00535-2020","article-title":"Treatment of nontuberculous mycobacterial pulmonary disease: an official ATS\/ERS\/ESCMID\/IDSA clinical practice guideline","volume":"56","author":"Daley","year":"2020","journal-title":"Eur Respir J"},{"issue":"9","key":"10.1016\/j.diagmicrobio.2024.116526_bib0009","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0239146","article-title":"Evaluation of the GenoType NTM-DR assay performance for the identification and molecular detection of antibiotic resistance in Mycobacterium abscessus complex","volume":"15","author":"Bouzinbi","year":"2020","journal-title":"PLoS One"},{"issue":"8","key":"10.1016\/j.diagmicrobio.2024.116526_bib0010","first-page":"57","article-title":"GenoType NTM-DR performance evaluation for identification of mycobacterium avium complex and mycobacterium abscessus and determination of clarithromycin and amikacin resistance","author":"Huh","year":"2019","journal-title":"J Clin Microbiol"},{"issue":"6","key":"10.1016\/j.diagmicrobio.2024.116526_bib0011","doi-asserted-by":"crossref","first-page":"1653","DOI":"10.1128\/JCM.00147-16","article-title":"GenoType NTM-DR for identifying mycobacterium abscessus subspecies and determining molecular resistance","volume":"54","author":"Kehrmann","year":"2016","journal-title":"J Clin Microbiol"},{"issue":"4","key":"10.1016\/j.diagmicrobio.2024.116526_bib0012","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1016\/j.cmi.2017.07.031","article-title":"Comparison of methods available for identification of Mycobacterium chimaera","volume":"24","author":"Lecorche","year":"2018","journal-title":"Clin Microbiol Infect"},{"issue":"6","key":"10.1016\/j.diagmicrobio.2024.116526_bib0013","doi-asserted-by":"crossref","first-page":"1821","DOI":"10.1128\/JCM.00009-17","article-title":"Evaluation of GenoType NTM-DR assay for identification of mycobacterium chimaera","volume":"55","author":"Mok","year":"2017","journal-title":"J Clin Microbiol"},{"issue":"6","key":"10.1016\/j.diagmicrobio.2024.116526_bib0014","doi-asserted-by":"crossref","first-page":"1669","DOI":"10.1093\/jac\/dkx021","article-title":"Evaluation of the new GenoType NTM-DR kit for the molecular detection of antimicrobial resistance in non-tuberculous mycobacteria","volume":"72","author":"Mougari","year":"2017","journal-title":"J Antimicrob Chemother"},{"issue":"3","key":"10.1016\/j.diagmicrobio.2024.116526_bib0015","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.05041-22","article-title":"Subspecies distribution and antimicrobial susceptibility testing of mycobacterium abscessus clinical Isolates in Madrid, Spain: a retrospective multicenter study","volume":"11","author":"Ruedas-Lopez","year":"2023","journal-title":"Microbiol Spectr"},{"issue":"11","key":"10.1016\/j.diagmicrobio.2024.116526_bib0016","doi-asserted-by":"crossref","first-page":"2836","DOI":"10.3201\/eid2711.210124","article-title":"Population genomics and inference of mycobacterium avium complex clusters in cystic fibrosis care centers, United States","volume":"27","author":"Hasan","year":"2021","journal-title":"Emerg Infect Dis"},{"issue":"12","key":"10.1016\/j.diagmicrobio.2024.116526_bib0017","doi-asserted-by":"crossref","first-page":"1960","DOI":"10.1513\/AnnalsATS.202009-1214OC","article-title":"Population Genomics of Mycobacterium abscessus from U.S. Cystic Fibrosis Care Centers","volume":"18","author":"Davidson","year":"2021","journal-title":"Ann Am Thorac Soc"},{"issue":"16","key":"10.1016\/j.diagmicrobio.2024.116526_bib0018","doi-asserted-by":"crossref","DOI":"10.1128\/genomeA.00189-17","article-title":"Complete Genome Sequence of Mycobacterium avium subsp. hominissuis Strain H87 Isolated from an Indoor Water Sample","volume":"5","author":"Zhao","year":"2017","journal-title":"Genome Announc"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0019","article-title":"A scalable, efficient, and safe method to prepare high quality DNA from mycobacteria and other challenging cells","volume":"19","author":"Epperson","year":"2020","journal-title":"J Clin Tuberc Other Mycobact Dis"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0020","series-title":"Hain lifescience gmbH","article-title":"GenoType NTM-DR Ver. 1.0","year":"2015"},{"issue":"7","key":"10.1016\/j.diagmicrobio.2024.116526_bib0021","doi-asserted-by":"crossref","first-page":"1870","DOI":"10.1093\/molbev\/msw054","article-title":"MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets","volume":"33","author":"Kumar","year":"2016","journal-title":"Mol Biol Evol"},{"issue":"1","key":"10.1016\/j.diagmicrobio.2024.116526_bib0022","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1111\/2041-210X.12628","article-title":"ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data","volume":"8","author":"Yu","year":"2017","journal-title":"Methods Ecol Evol"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0023","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1186\/1471-2105-15-182","article-title":"Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads","volume":"15","author":"Jiang","year":"2014","journal-title":"BMC Bioinformatics"},{"issue":"10","key":"10.1016\/j.diagmicrobio.2024.116526_bib0024","doi-asserted-by":"crossref","first-page":"714","DOI":"10.1089\/cmb.2013.0084","article-title":"Assembling single-cell genomes and mini-metagenomes from chimeric MDA products","volume":"20","author":"Nurk","year":"2013","journal-title":"J Comput Biol"},{"issue":"14","key":"10.1016\/j.diagmicrobio.2024.116526_bib0025","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"issue":"8","key":"10.1016\/j.diagmicrobio.2024.116526_bib0026","doi-asserted-by":"crossref","first-page":"1719","DOI":"10.1093\/jac\/dkr209","article-title":"Genetic analysis of new 16S rRNA mutations conferring aminoglycoside resistance in Mycobacterium abscessus","volume":"66","author":"Nessar","year":"2011","journal-title":"J Antimicrob Chemother"},{"issue":"2","key":"10.1016\/j.diagmicrobio.2024.116526_bib0027","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1128\/AAC.00861-10","article-title":"Assessment of clarithromycin susceptibility in strains belonging to the Mycobacterium abscessus group by erm(41) and rrl sequencing","volume":"55","author":"Bastian","year":"2011","journal-title":"Antimicrob Agents Chemother"},{"issue":"3","key":"10.1016\/j.diagmicrobio.2024.116526_bib0028","doi-asserted-by":"crossref","first-page":"559","DOI":"10.3201\/eid2503.181282","article-title":"Genomic analysis of cardiac surgery-associated mycobacterium chimaera infections, United States","volume":"25","author":"Hasan","year":"2019","journal-title":"Emerg Infect Dis"},{"issue":"4","key":"10.1016\/j.diagmicrobio.2024.116526_bib0029","doi-asserted-by":"crossref","first-page":"1211","DOI":"10.1128\/JCM.02950-14","article-title":"Utility of sequencing the erm(41) gene in isolates of Mycobacterium abscessus subsp. abscessus with low and intermediate clarithromycin MICs","volume":"53","author":"Brown-Elliott","year":"2015","journal-title":"J Clin Microbiol"},{"issue":"1","key":"10.1016\/j.diagmicrobio.2024.116526_bib0030","doi-asserted-by":"crossref","first-page":"i1","DOI":"10.1136\/thoraxjnl-2015-207360","article-title":"US cystic fibrosis foundation and european cystic fibrosis society consensus recommendations for the management of non-tuberculous mycobacteria in individuals with cystic fibrosis","volume":"71","author":"Floto","year":"2016","journal-title":"Thorax"},{"issue":"3","key":"10.1016\/j.diagmicrobio.2024.116526_bib0031","doi-asserted-by":"crossref","first-page":"365","DOI":"10.3201\/eid2203.151643","article-title":"Leveraging advances in tuberculosis diagnosis and treatment to address nontuberculous mycobacterial disease","volume":"22","author":"Raju","year":"2016","journal-title":"Emerg Infect Dis"},{"issue":"9","key":"10.1016\/j.diagmicrobio.2024.116526_bib0032","first-page":"71","article-title":"Reconstituting the genus Mycobacterium","author":"Meehan","year":"2021","journal-title":"Int J Syst Evol Microbiol"},{"issue":"1-2","key":"10.1016\/j.diagmicrobio.2024.116526_bib0033","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1111\/j.1574-6968.1994.tb07194.x","article-title":"Mycobacterial cell wall: structure and role in natural resistance to antibiotics","volume":"123","author":"Jarlier","year":"1994","journal-title":"FEMS Microbiol Lett"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0034","doi-asserted-by":"crossref","first-page":"1613","DOI":"10.3389\/fmicb.2018.01613","article-title":"Challenges of NTM Drug Development","volume":"9","author":"Falkinham","year":"2018","journal-title":"Front Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0035","doi-asserted-by":"crossref","unstructured":"Saxena, S., H.P. Spaink, and G. Forn-Cuni, Drug resistance in nontuberculous mycobacteria: mechanisms and models. Biol (Basel), 2021. 10(2).","DOI":"10.3390\/biology10020096"},{"issue":"2","key":"10.1016\/j.diagmicrobio.2024.116526_bib0036","doi-asserted-by":"crossref","DOI":"10.1128\/CMR.00038-17","article-title":"Practice guidelines for clinical microbiology laboratories: mycobacteria","volume":"31","author":"Forbes","year":"2018","journal-title":"Clin Microbiol Rev"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0037","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.01638-24","article-title":"MALDI-TOF mass spectrometry from nucleic acid: development and evaluation of a novel platform for identification of mycobacteria and detection of genetic markers of resistance","author":"DeCurtis","year":"2024","journal-title":"Microbiol Spectr"},{"issue":"1","key":"10.1016\/j.diagmicrobio.2024.116526_bib0038","doi-asserted-by":"crossref","DOI":"10.1128\/jcm.01110-22","article-title":"Identification of Mycobacterium abscessus Subspecies by MALDI-TOF Mass Spectrometry and Machine Learning","volume":"61","author":"Rodriguez-Temporal","year":"2023","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0039","doi-asserted-by":"crossref","first-page":"3140","DOI":"10.3389\/fmicb.2018.03140","article-title":"Evaluation of a Novel MALDI Biotyper Algorithm to Distinguish Mycobacterium intracellulare From Mycobacterium chimaera","volume":"9","author":"Epperson","year":"2018","journal-title":"Front Microbiol"},{"issue":"4","key":"10.1016\/j.diagmicrobio.2024.116526_bib0040","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1016\/j.cll.2020.08.010","article-title":"Novel Assays\/Applications for Patients Suspected of Mycobacterial Diseases","volume":"40","author":"Banaei","year":"2020","journal-title":"Clin Lab Med"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0041","doi-asserted-by":"crossref","unstructured":"Woods, G.L., et al., CLSI, in susceptibility testing of mycobacteria, nocardiae, and other aerobic actinomycetes, nd, Editor. 2011: Wayne (PA).","DOI":"10.1128\/9781555816728.ch73"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0042","unstructured":"Woods, G.L., et al., CLSI, in susceptibility testing of mycobacteria, nocardia spp., and other aerobic actinomycetes, 3rd Edition. 2018, Wayne (PA)."},{"issue":"10","key":"10.1016\/j.diagmicrobio.2024.116526_bib0043","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.00834-19","article-title":"Antimycobacterial susceptibility testing of nontuberculous mycobacteria","volume":"57","author":"Brown-Elliott","year":"2019","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0044","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1016\/j.ijid.2020.02.059","article-title":"Comparative analysis of phenotypic and genotypic antibiotic susceptibility patterns in Mycobacterium avium complex","volume":"93","author":"Wetzstein","year":"2020","journal-title":"Int J Infect Dis"},{"issue":"4","key":"10.1016\/j.diagmicrobio.2024.116526_bib0045","doi-asserted-by":"crossref","DOI":"10.1128\/jcm.01626-22","article-title":"MGIT-seq for the identification of nontuberculous mycobacteria and drug resistance: a prospective study","volume":"61","author":"Fukushima","year":"2023","journal-title":"J Clin Microbiol"},{"issue":"9","key":"10.1016\/j.diagmicrobio.2024.116526_bib0046","article-title":"Whole-genome sequencing and drug-susceptibility analysis of serial mycobacterium abscessus isolates from thai patients","volume":"11","author":"Kaewprasert","year":"2022","journal-title":"Biol (Basel)"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0047","doi-asserted-by":"crossref","first-page":"1739","DOI":"10.3389\/fmicb.2017.01739","article-title":"Relationship between Antibiotic susceptibility and genotype in mycobacterium abscessus clinical isolates","volume":"8","author":"Li","year":"2017","journal-title":"Front Microbiol"},{"issue":"11","key":"10.1016\/j.diagmicrobio.2024.116526_bib0048","doi-asserted-by":"crossref","first-page":"1460","DOI":"10.1016\/j.jmoldx.2021.07.023","article-title":"Clinical whole genome sequencing for clarithromycin and amikacin resistance prediction and subspecies identification of mycobacterium abscessus","volume":"23","author":"Realegeno","year":"2021","journal-title":"J Mol Diagn"},{"issue":"11","key":"10.1016\/j.diagmicrobio.2024.116526_bib0049","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0294677","article-title":"Phenotypic drug-susceptibility profiles and genetic analysis based on whole-genome sequencing of Mycobacterium avium complex isolates in Thailand","volume":"18","author":"Sirichoat","year":"2023","journal-title":"PLoS One"},{"issue":"2","key":"10.1016\/j.diagmicrobio.2024.116526_bib0050","doi-asserted-by":"crossref","first-page":"354","DOI":"10.1093\/infdis\/174.2.354","article-title":"Molecular mechanisms of clarithromycin resistance in Mycobacterium avium: observation of multiple 23S rDNA mutations in a clonal population","volume":"174","author":"Meier","year":"1996","journal-title":"J Infect Dis"},{"issue":"10","key":"10.1016\/j.diagmicrobio.2024.116526_bib0051","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1128\/JCM.01612-13","article-title":"In vitro activity of amikacin against isolates of Mycobacterium avium complex with proposed MIC breakpoints and finding of a 16S rRNA gene mutation in treated isolates","volume":"51","author":"Brown-Elliott","year":"2013","journal-title":"J Clin Microbiol"},{"issue":"4","key":"10.1016\/j.diagmicrobio.2024.116526_bib0052","doi-asserted-by":"crossref","first-page":"1367","DOI":"10.1128\/AAC.01275-08","article-title":"A novel gene, erm(41), confers inducible macrolide resistance to clinical isolates of Mycobacterium abscessus but is absent from Mycobacterium chelonae","volume":"53","author":"Nash","year":"2009","journal-title":"Antimicrob Agents Chemother"},{"issue":"7","key":"10.1016\/j.diagmicrobio.2024.116526_bib0053","doi-asserted-by":"crossref","first-page":"1676","DOI":"10.1128\/AAC.40.7.1676","article-title":"Genetic basis for clarithromycin resistance among isolates of Mycobacterium chelonae and Mycobacterium abscessus","volume":"40","author":"Wallace","year":"1996","journal-title":"Antimicrob Agents Chemother"},{"issue":"8","key":"10.1016\/j.diagmicrobio.2024.116526_bib0054","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pntd.0005841","article-title":"Predictive factors for a one-year improvement in nontuberculous mycobacterial pulmonary disease: An 11-year retrospective and multicenter study","volume":"11","author":"Cadelis","year":"2017","journal-title":"PLoS Negl Trop Dis"},{"issue":"11","key":"10.1016\/j.diagmicrobio.2024.116526_bib0055","doi-asserted-by":"crossref","first-page":"870","DOI":"10.1038\/nrmicro1265","article-title":"The bacterial ribosome as a target for antibiotics","volume":"3","author":"Poehlsgaard","year":"2005","journal-title":"Nat Rev Microbiol"},{"issue":"8","key":"10.1016\/j.diagmicrobio.2024.116526_bib0056","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.00455-21","article-title":"A Molecular-Beacon-Based Multiplex Real-Time PCR Assay To Distinguish Mycobacterium abscessus Subspecies and Determine Macrolide Susceptibility","volume":"59","author":"Marras","year":"2021","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0057","doi-asserted-by":"crossref","unstructured":"Cao Yao, J.C., J. Navas Mendez, and M.T. Tortola Fernandez, Analysis of Phenotypic and Genotypic Susceptibility to Clarithromycin and Amikacin of Mycobacterium abscessus Complex Strains Isolated from Cystic Fibrosis Patients. Microorganisms, 2023. 11(12).","DOI":"10.3390\/microorganisms11122897"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0058","unstructured":"(LPSN), L.o.P.n.w.S.i.N. 2020; Available from: https:\/\/lpsn.dsmz.de\/genus\/mycobacterium."},{"issue":"4","key":"10.1016\/j.diagmicrobio.2024.116526_bib0059","doi-asserted-by":"crossref","first-page":"1277","DOI":"10.1099\/ijs.0.02777-0","article-title":"Proposal to elevate the genetic variant MAC-A, included in the Mycobacterium avium complex, to species rank as Mycobacterium chimaera sp. nov","volume":"54","author":"Tortoli","year":"2004","journal-title":"Int J Syst Evol Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116526_bib0060","doi-asserted-by":"crossref","first-page":"2007","DOI":"10.3389\/fmicb.2018.02007","article-title":"Genome-based taxonomic classification of the phylum actinobacteria","volume":"9","author":"Nouioui","year":"2018","journal-title":"Front Microbiol"},{"issue":"2","key":"10.1016\/j.diagmicrobio.2024.116526_bib0061","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1016\/j.diagmicrobio.2017.02.017","article-title":"Distribution and clinical significance of Mycobacterium avium complex species isolated from respiratory specimens","volume":"88","author":"Kim","year":"2017","journal-title":"Diagn Microbiol Infect Dis"},{"issue":"6","key":"10.1016\/j.diagmicrobio.2024.116526_bib0062","doi-asserted-by":"crossref","first-page":"1998","DOI":"10.1099\/ijsem.0.002767","article-title":"Whole-genome sequence analysis of the Mycobacterium avium complex and proposal of the transfer of Mycobacterium yongonense to Mycobacterium intracellulare subsp. yongonense subsp. nov","volume":"68","author":"Castejon","year":"2018","journal-title":"Int J Syst Evol Microbiol"}],"container-title":["Diagnostic Microbiology and Infectious Disease"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0732889324003523?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0732889324003523?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,2,23]],"date-time":"2025-02-23T04:45:42Z","timestamp":1740285942000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0732889324003523"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,12]]},"references-count":62,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2024,12]]}},"alternative-id":["S0732889324003523"],"URL":"https:\/\/doi.org\/10.1016\/j.diagmicrobio.2024.116526","relation":{},"ISSN":["0732-8893"],"issn-type":[{"value":"0732-8893","type":"print"}],"subject":[],"published":{"date-parts":[[2024,12]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Evaluation of the GenoType NTM-DR line probe assay for nontuberculous mycobacteria using whole genome sequences as reference standard","name":"articletitle","label":"Article Title"},{"value":"Diagnostic Microbiology and Infectious Disease","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.diagmicrobio.2024.116526","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Authors. Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"116526"}}