{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,10]],"date-time":"2026-11-10T14:59:04Z","timestamp":1794322744393,"version":"4.9.0"},"reference-count":36,"publisher":"Elsevier BV","issue":"3","license":[{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["clinicalkey.fr","clinicalkey.jp","clinicalkey.es","clinicalkey.com.au","clinicalkey.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Diagnostic Microbiology and Infectious Disease"],"published-print":{"date-parts":[[2025,3]]},"DOI":"10.1016\/j.diagmicrobio.2024.116676","type":"journal-article","created":{"date-parts":[[2024,12,30]],"date-time":"2024-12-30T07:36:32Z","timestamp":1735544192000},"page":"116676","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":18,"title":["The IR Biotyper as a tool for typing organisms of significance for hospital epidemiology- A subject review"],"prefix":"10.1016","volume":"111","author":[{"ORCID":"https:\/\/orcid.org\/0009-0009-6998-9156","authenticated-orcid":false,"given":"Esraa","family":"Al-Fraihat","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kevin R.","family":"Barker","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5546-0261","authenticated-orcid":false,"given":"Manal","family":"Tadros","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0001","doi-asserted-by":"crossref","first-page":"372","DOI":"10.1016\/S0934-8840(11)80707-3","article-title":"Comparative classification of Acinetobacter baumannii strains using seven different typing methods","volume":"282","author":"Seltmann","year":"1995","journal-title":"Zentralblatt Fur Bakteriologie"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0002","doi-asserted-by":"crossref","first-page":"1036","DOI":"10.1128\/AEM.02004-06","article-title":"Differentiation of Listeria monocytogenes Serovars by using artificial neural network analysis of fourier-transformed infrared spectra","volume":"73","author":"Rebuffo-Scheer","year":"2007","journal-title":"Appl Environ Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0003","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1016\/j.mimet.2014.05.011","article-title":"Identification and differentiation of food-related bacteria: A comparison of FTIR spectroscopy and MALDI-TOF mass spectrometry","volume":"103","author":"Wenning","year":"2014","journal-title":"J Microbiol Methods"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0004","doi-asserted-by":"crossref","first-page":"897","DOI":"10.3390\/antibiotics9120897","article-title":"Potential of FTIR-spectroscopy for drugs screening against helicobacter pylori","volume":"9","author":"Sampaio","year":"2020","journal-title":"Antibiotics"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0005","doi-asserted-by":"crossref","first-page":"1502","DOI":"10.3390\/antibiotics12101502","article-title":"Spectroscopic identification of bacteria resistance to antibiotics by means of absorption of specific biochemical groups and special machine learning algorithm","volume":"12","author":"Barrera-Pati\u00f1o","year":"2023","journal-title":"Antibiotics"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0006","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1007\/s10096-018-3431-3","article-title":"Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing","volume":"38","author":"Novais","year":"2019","journal-title":"Eur J Clin Microbiol Infect Dis"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0007","doi-asserted-by":"crossref","first-page":"1883","DOI":"10.1007\/s10096-019-03622-y","article-title":"Analysis of Streptococcus pneumoniae using Fourier-transformed infrared spectroscopy allows prediction of capsular serotype","volume":"38","author":"Burckhardt","year":"2019","journal-title":"Eur J Clin Microbiol Infect Dis"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0008","article-title":"Evaluation of fourier transform infrared spectroscopy as a first-line typing tool for the identification of extended-spectrum \u03b2-lactamase-producing klebsiella pneumoniae outbreaks in the hospital setting","volume":"13","author":"Wang-Wang","year":"2022","journal-title":"Front Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0009","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.866426","article-title":"Use of fourier-transform infrared spectroscopy with IR Biotyper\u00ae system for legionella pneumophila serogroups identification","volume":"13","author":"Pascale","year":"2022","journal-title":"Front Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0010","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.00843-18","article-title":"Typing and species identification of clinical klebsiella isolates by fourier transform infrared spectroscopy and matrix-assisted laser desorption ionization\u2013time of flight mass spectrometry","volume":"56","author":"Dinkelacker","year":"2018","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0011","doi-asserted-by":"crossref","first-page":"1440","DOI":"10.3389\/fmicb.2019.01440","article-title":"Fourier-transform infrared spectroscopy can quickly type gram-negative bacilli responsible for hospital outbreaks","volume":"10","author":"Martak","year":"2019","journal-title":"Front Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0012","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2019.02582","article-title":"Fourier-transform infrared (FTIR) spectroscopy for typing of clinical enterobacter cloacae complex isolates","volume":"10","author":"Vogt","year":"2019","journal-title":"Front Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0013","doi-asserted-by":"crossref","DOI":"10.1186\/s13756-022-01094-y","article-title":"Surveillance of enterobacter cloacae complex colonization and comparative analysis of different typing methods on a neonatal intensive care unit in Germany","volume":"11","author":"Wendel","year":"2022","journal-title":"Antimicrob Resist Infect Control"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0014","doi-asserted-by":"crossref","DOI":"10.1016\/j.mimet.2023.106675","article-title":"Fourier transform infrared spectroscopy; can it be used as a rapid typing method of Neisseria gonorrhoeae?","volume":"205","author":"Corwin","year":"2023","journal-title":"J Microbiol Methods"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0015","doi-asserted-by":"crossref","DOI":"10.3389\/fpubh.2023.1290912","article-title":"The emergence of carbapenemase-producing Enterobacterales in hospitals: a major challenge for a debilitated healthcare system in Lebanon","volume":"11","author":"Daaboul","year":"2023","journal-title":"Front Public Health"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0016","article-title":"Evaluation of IR Biotyper for carbapenem-resistant Pseudomonas aeruginosa typing and its application potential for the investigation of nosocomial infection","volume":"14","author":"Hu","year":"2023","journal-title":"Front Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0017","doi-asserted-by":"crossref","DOI":"10.1016\/j.mimet.2022.106564","article-title":"Machine learning-based typing of Salmonella enterica O-serogroups by the fourier-transform infrared (FTIR) spectroscopy-based IR Biotyper system","volume":"201","author":"Cordovana","year":"2022","journal-title":"J Microbiol Methods"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0018","doi-asserted-by":"crossref","first-page":"146","DOI":"10.3390\/jof6030146","article-title":"Evaluation of microsatellite typing, ITS sequencing, AFLP fingerprinting, MALDI-TOF MS, and fourier-transform infrared spectroscopy analysis of candida auris","volume":"6","author":"Vatanshenassan","year":"2020","journal-title":"J Fungi"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0019","doi-asserted-by":"crossref","first-page":"1239","DOI":"10.2217\/fmb-2020-0276","article-title":"Application of Fourier transform infrared spectroscopy for real-time typing of Acinetobacter baumannii outbreak in intensive care unit","volume":"16","author":"Lombardo","year":"2021","journal-title":"Fut Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0020","doi-asserted-by":"crossref","DOI":"10.1128\/Spectrum.01831-21","article-title":"Fourier transform infrared spectroscopy for typing burkholderia cenocepacia ET12 isolates","volume":"9","author":"Barker","year":"2021","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0021","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1016\/j.jhin.2021.11.017","article-title":"Nosocomial outbreak of monoclonal VIM carbapenemase-producing Enterobacter cloacae complex in an intensive care unit during the COVID-19 pandemic: an integrated approach","volume":"120","author":"Mulli\u00e9","year":"2022","journal-title":"J Hosp Infect"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0022","doi-asserted-by":"crossref","DOI":"10.1016\/j.mimet.2022.106603","article-title":"Comparison of FT-IR with whole-genome sequencing for identification of maternal-toneonate transmission of antibiotic-resistant bacteria","volume":"202","author":"Azrad","year":"2022","journal-title":"J Microbiol Methods"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0023","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2022.887754","article-title":"Surveillance diagnostic algorithm using real-time PCR assay and strain typing method development to assist with the control of C. auris amid COVID-19 pandemic","volume":"12","author":"Contreras","year":"2022","journal-title":"Front Cell Infect Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0024","doi-asserted-by":"crossref","first-page":"1349","DOI":"10.1007\/s42770-022-00774-6","article-title":"Fourier transform infrared spectroscopy as a new tool for surveillance in local stewardship antimicrobial program: a retrospective study in a nosocomial Acinetobacter baumannii outbreak","volume":"53","author":"Guerrero-Lozano","year":"2022","journal-title":"Braz J Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0025","doi-asserted-by":"crossref","DOI":"10.1128\/jcm.00325-22","article-title":"Validation of fourier transform infrared spectroscopy for serotyping of streptococcus pneumoniae","volume":"60","author":"Passaris","year":"2022","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0026","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02388-23","article-title":"The Fourier-transform infrared spectroscopy-based method as a new typing tool for Candida parapsilosis clinical isolates","volume":"11","author":"De Carolis","year":"2023","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0027","doi-asserted-by":"crossref","DOI":"10.1016\/j.mimet.2023.106792","article-title":"Application of FT-IR spectroscopy for mycobacterium abscessus complex subspecies differentiation","volume":"212","author":"Curtoni","year":"2023","journal-title":"J Microbiol Methods"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0028","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02214-23","article-title":"A failure of Fourier transform infrared spectroscopy to type Burkholderia isolates from chronically infected patients with cystic fibrosis","volume":"11","author":"Tkadlec","year":"2023","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0029","article-title":"Classification of Salmonella enterica of the (Para-)Typhoid Fever Group by Fourier-Transform Infrared (FTIR)","volume":"9","author":"Cordovana","year":"2021","journal-title":"Spectrosc. Microorg"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0030","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.00984-23","article-title":"Fourier-transform infrared spectroscopy for typing of vancomycin-resistant Enterococcus faecium : performance analysis and outbreak investigation","volume":"11","author":"Scheier","year":"2023","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0031","doi-asserted-by":"crossref","DOI":"10.1128\/jcm.00347-23","article-title":"Evaluation of Fourier transform-infrared spectroscopy (FT-IR) as a control measure for nosocomial outbreak investigations","volume":"61","author":"Uribe","year":"2023","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0032","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.04119-23","article-title":"Comparative analysis of IR-Biotyper, MLST, cgMLST, and WGS for clustering of vancomycin-resistant Enterococcus faecium in a neonatal intensive care unit","volume":"12","author":"Park","year":"2024","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0033","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.00098-20","article-title":"Fourier transform infrared spectroscopy is a new option for outbreak investigation: A retrospective analysis of an extended-spectrum-beta-lactamase-producing Klebsiella pneumoniae outbreak in a neonatal intensive care unit","volume":"58","author":"Rakovitsky","year":"2020","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0034","article-title":"Performance Evaluation of the IR biotyper\u00ae system for clinical microbiology: application for detection of staphylococcus aureus sequence type 8 strains","volume":"11","author":"Hong","year":"2022","journal-title":"Antibiotics (Basel)"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0035","article-title":"Use of Fourier-transform infrared spectroscopy for real-time outbreak investigation of OXA-48-producing Escherichia coli","author":"Kon","year":"2023","journal-title":"J Antimicrob Chemother"},{"key":"10.1016\/j.diagmicrobio.2024.116676_bib0036","doi-asserted-by":"crossref","first-page":"797","DOI":"10.1007\/s10096-024-04764-4","article-title":"Characterization of an outbreak caused by Elizabethkingia miricola using fourier-transform infrared (FTIR) spectroscopy","volume":"43","author":"Rodr\u00edguez-Temporal","year":"2024","journal-title":"Eur J Clin Microbiol Infect Dis"}],"container-title":["Diagnostic Microbiology and Infectious Disease"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0732889324005005?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0732889324005005?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,2,26]],"date-time":"2025-02-26T09:05:00Z","timestamp":1740560700000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0732889324005005"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,3]]},"references-count":36,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2025,3]]}},"alternative-id":["S0732889324005005"],"URL":"https:\/\/doi.org\/10.1016\/j.diagmicrobio.2024.116676","relation":{},"ISSN":["0732-8893"],"issn-type":[{"value":"0732-8893","type":"print"}],"subject":[],"published":{"date-parts":[[2025,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"The IR Biotyper as a tool for typing organisms of significance for hospital epidemiology- A subject review","name":"articletitle","label":"Article Title"},{"value":"Diagnostic Microbiology and Infectious Disease","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.diagmicrobio.2024.116676","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier Inc. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"116676"}}