{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,30]],"date-time":"2026-09-30T23:47:19Z","timestamp":1790812039514,"version":"4.1.0"},"reference-count":24,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2020,2,1]],"date-time":"2020-02-01T00:00:00Z","timestamp":1580515200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2020,2,1]],"date-time":"2020-02-01T00:00:00Z","timestamp":1580515200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2019,12,19]],"date-time":"2019-12-19T00:00:00Z","timestamp":1576713600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Data in Brief"],"published-print":{"date-parts":[[2020,2]]},"DOI":"10.1016\/j.dib.2019.105056","type":"journal-article","created":{"date-parts":[[2019,12,31]],"date-time":"2019-12-31T18:10:38Z","timestamp":1577815838000},"page":"105056","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":4,"special_numbering":"C","title":["RNA-seq data of soleus muscle tissue after spinal cord injury under conditions of inactivity and applied exercise"],"prefix":"10.1016","volume":"28","author":[{"given":"Julia H.","family":"Chariker","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Morgan","family":"Sharp","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sujata Saraswat","family":"Ohri","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cynthia","family":"Gomes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fiona","family":"Brabazon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kathryn A.","family":"Harman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Scott R.","family":"Whittemore","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jeffrey C.","family":"Petruska","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David SK.","family":"Magnuson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3487-6572","authenticated-orcid":false,"given":"Eric C.","family":"Rouchka","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.dib.2019.105056_bib1","doi-asserted-by":"crossref","first-page":"488","DOI":"10.1038\/sj.sc.3102169","article-title":"A\u00a0longitudinal study of skeletal muscle following spinal cord injury and locomotor training","volume":"46","author":"Liu","year":"2008","journal-title":"Spinal Cord"},{"key":"10.1016\/j.dib.2019.105056_bib2","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1089\/neu.2012.2504","article-title":"Hindlimb muscle morphology and function in a new atrophy model combining spinal cord injury and cast immobilization","volume":"30","author":"Ye","year":"2013","journal-title":"J.\u00a0Neurotrauma"},{"key":"10.1016\/j.dib.2019.105056_bib3","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/1745-6215-16-7","article-title":"Early exercise after spinal cord injury (\u2018Switch-On\u2019): study protocol for a randomised controlled trial","volume":"16","author":"Galea","year":"2015","journal-title":"Trials"},{"key":"10.1016\/j.dib.2019.105056_bib4","doi-asserted-by":"crossref","first-page":"556","DOI":"10.1152\/japplphysiol.00099.2006","article-title":"Postfatigue potentiation of the paralyzed soleus muscle: evidence for adaptation with long-term electrical stimulation training","volume":"101","author":"Shields","year":"2006","journal-title":"J.\u00a0Appl. Physiol."},{"key":"10.1016\/j.dib.2019.105056_bib5","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1186\/1743-0003-10-46","article-title":"Early changes in muscle atrophy and muscle fiber type conversion after spinal cord transection and peripheral nerve transection in rats","volume":"10","author":"Higashino","year":"2013","journal-title":"J.\u00a0NeuroEng. Rehabil."},{"key":"10.1016\/j.dib.2019.105056_bib6","doi-asserted-by":"crossref","first-page":"1487","DOI":"10.1152\/japplphysiol.00053.2002","article-title":"Mechanical properties of rat soleus after long-term spinal cord transection","volume":"93","author":"Talmadge","year":"2002","journal-title":"J.\u00a0Appl. Physiol."},{"key":"10.1016\/j.dib.2019.105056_bib7","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1089\/neu.2012.2504","article-title":"Hindlimb muscle morphology and function in a new atrophy model combining spinal cord injury and cast immobilization","volume":"30","author":"Ye","year":"2013","journal-title":"J.\u00a0Neurotrauma"},{"key":"10.1016\/j.dib.2019.105056_bib8","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1038\/s41597-019-0088-4","article-title":"Transcriptome of dorsal root ganglia caudal to a spinal cord injury with modulated behavioral activity","volume":"6","author":"Chariker","year":"2019","journal-title":"Sci. Data"},{"key":"10.1016\/j.dib.2019.105056_bib9","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1038\/s41597-019-0087-5","article-title":"Activity\/Exercise-induced changes in the liver transcriptome after chronic spinal cord injury","volume":"6","author":"Chariker","year":"2019","journal-title":"Sci. Data"},{"key":"10.1016\/j.dib.2019.105056_bib10","series-title":"Spinal Cord Injury, NCBI's Gene Expression Omnibus (GEO)","year":"2019"},{"key":"10.1016\/j.dib.2019.105056_bib11","series-title":"FastQC: A Quality Control Tool for High Throughput Sequence Data","author":"Andrews","year":"2015"},{"key":"10.1016\/j.dib.2019.105056_bib12","doi-asserted-by":"crossref","first-page":"1013","DOI":"10.1038\/nbt.1585","article-title":"The challenges of sequencing by synthesis","volume":"27","author":"Fuller","year":"2009","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.dib.2019.105056_bib13","doi-asserted-by":"crossref","first-page":"D258","DOI":"10.1093\/nar\/gkh036","article-title":"The Gene Ontology (GO) database and informatics resource","volume":"32","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.dib.2019.105056_bib14","doi-asserted-by":"crossref","first-page":"H861","DOI":"10.1152\/ajpheart.00046.2017","article-title":"A\u00a0comparison of passive hindlimb cycling and active upper-limb exercise provides new insights into systolic dysfunction after spinal cord injury","volume":"313","author":"DeVeau","year":"2017","journal-title":"Am. J. Physiol. Heart Circ. Physiol."},{"key":"10.1016\/j.dib.2019.105056_bib15","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1089\/neu.1992.9.123","article-title":"A\u00a0monitored contusion model of spinal cord injury in the rat","volume":"9","author":"Gruner","year":"1992","journal-title":"J.\u00a0Neurotrauma"},{"key":"10.1016\/j.dib.2019.105056_bib16","doi-asserted-by":"crossref","first-page":"18543","DOI":"10.1523\/JNEUROSCI.4306-11.2011","article-title":"Conduction failure following spinal cord injury: functional and anatomical changes from acute to chronic stages","volume":"31","author":"James","year":"2011","journal-title":"J.\u00a0Neurosci."},{"key":"10.1016\/j.dib.2019.105056_bib17","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1093\/bioinformatics\/bts635","article-title":"STAR: ultrafast universal RNA-seq aligner","volume":"29","author":"Dobin","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.dib.2019.105056_bib18","doi-asserted-by":"crossref","first-page":"166","DOI":"10.1093\/bioinformatics\/btu638","article-title":"HTSeq\u2014a Python framework to work with high-throughput sequencing data","volume":"31","author":"Anders","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.dib.2019.105056_bib19","doi-asserted-by":"crossref","first-page":"D749","DOI":"10.1093\/nar\/gkt1196","article-title":"Ensembl 2014","volume":"42","author":"Flicek","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.dib.2019.105056_bib20","series-title":"The R Project for Statistical Computing","author":"The R Foundation","year":"2019"},{"key":"10.1016\/j.dib.2019.105056_bib21","doi-asserted-by":"crossref","first-page":"R106","DOI":"10.1186\/gb-2010-11-10-r106","article-title":"Differential expression analysis for sequence count data","volume":"11","author":"Anders","year":"2010","journal-title":"Genome Biol."},{"key":"10.1016\/j.dib.2019.105056_bib22","doi-asserted-by":"crossref","first-page":"1765","DOI":"10.1038\/nprot.2013.099","article-title":"Count-based differential expression analysis of RNA sequencing data using R and bioconductor","volume":"8","author":"Anders","year":"2013","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.dib.2019.105056_bib23","doi-asserted-by":"crossref","first-page":"164","DOI":"10.3389\/fgene.2016.00164","article-title":"In Papyro comparison of TMM (edgeR), RLE (DESeq2), and MRN normalization methods for a simple two-conditions-without-replicates RNA-Seq experimental design","volume":"7","author":"Maza","year":"2016","journal-title":"Front. Genet."},{"key":"10.1016\/j.dib.2019.105056_bib24","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1101\/gr.229102","article-title":"The human genome browser at UCSC","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res."}],"container-title":["Data in Brief"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S235234091931412X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S235234091931412X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,11,6]],"date-time":"2025-11-06T17:53:59Z","timestamp":1762451639000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S235234091931412X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,2]]},"references-count":24,"alternative-id":["S235234091931412X"],"URL":"https:\/\/doi.org\/10.1016\/j.dib.2019.105056","relation":{},"ISSN":["2352-3409"],"issn-type":[{"value":"2352-3409","type":"print"}],"subject":[],"published":{"date-parts":[[2020,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"RNA-seq data of soleus muscle tissue after spinal cord injury under conditions of inactivity and applied exercise","name":"articletitle","label":"Article Title"},{"value":"Data in Brief","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.dib.2019.105056","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2019 The Author(s). Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"105056"}}