{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T14:57:08Z","timestamp":1790607428412,"version":"4.1.0"},"reference-count":77,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2023,12,1]],"date-time":"2023-12-01T00:00:00Z","timestamp":1701388800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2023,12,1]],"date-time":"2023-12-01T00:00:00Z","timestamp":1701388800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,11,10]],"date-time":"2023-11-10T00:00:00Z","timestamp":1699574400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Ecotoxicology and Environmental Safety"],"published-print":{"date-parts":[[2023,12]]},"DOI":"10.1016\/j.ecoenv.2023.115683","type":"journal-article","created":{"date-parts":[[2023,11,16]],"date-time":"2023-11-16T04:05:47Z","timestamp":1700107547000},"page":"115683","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":9,"special_numbering":"C","title":["Descriptive analyses of bacterial communities in marine sediment microcosms spiked with fish wastes, emamectin benzoate, and oxytetracycline"],"prefix":"10.1016","volume":"268","author":[{"given":"Lisa A.","family":"Johnson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Suzanne C.","family":"Dufour","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Derek D.N.","family":"Smith","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anthony J.","family":"Manning","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bulbul","family":"Ahmed","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-7347-6993","authenticated-orcid":false,"given":"Sherry","family":"Binette","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7977-1999","authenticated-orcid":false,"given":"Dounia","family":"Hamoutene","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.ecoenv.2023.115683_bib1","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1016\/j.drup.2012.03.005","article-title":"Evolution of antibiotic resistance at non-lethal drug concentrations","volume":"15","author":"Andersson","year":"2012","journal-title":"Drug Resist. Updat."},{"key":"10.1016\/j.ecoenv.2023.115683_bib2","doi-asserted-by":"crossref","first-page":"1889","DOI":"10.1111\/1755-0998.13395","article-title":"A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring","volume":"21","author":"Aylagas","year":"2021","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.ecoenv.2023.115683_bib3","doi-asserted-by":"crossref","first-page":"2408","DOI":"10.1093\/icesjms\/fsw027","article-title":"Near- and far-field dispersal modelling of organic waste from Atlantic salmon aquaculture in fjord systems","volume":"73","author":"Bannister","year":"2016","journal-title":"ICES J. Mar. Sci."},{"key":"10.1016\/j.ecoenv.2023.115683_bib4","doi-asserted-by":"crossref","unstructured":"Benskin, J.P., Ikonomou, M.G., Surridge, B.D., Dubetz, C., Klaassen, E., 2016. Biodegradation potential of aquaculture chemotherapeutants in marine sediments. Aquacult. Res. 47, 482\u2013497. https:\/\/doi.org\/10.1111\/are.12509.","DOI":"10.1111\/are.12509"},{"key":"10.1016\/j.ecoenv.2023.115683_bib5","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1016\/j.scitotenv.2019.02.430","article-title":"Negative effects of the sea lice therapeutant emamectin benzoate at low concentrations on benthic communities around Scottish fish farms","volume":"669","author":"Bloodworth","year":"2019","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ecoenv.2023.115683_bib6","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1038\/s41587-019-0209-9","article-title":"Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2","volume":"37","author":"Bolyen","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib7","doi-asserted-by":"crossref","first-page":"325","DOI":"10.2307\/1942268","article-title":"An ordination of the upland forest communities of southern Wisconsin","volume":"27","author":"Bray","year":"1957","journal-title":"Ecol. Monogr."},{"key":"10.1016\/j.ecoenv.2023.115683_bib8","doi-asserted-by":"crossref","first-page":"436","DOI":"10.3390\/jmse10030436","article-title":"Hydrogen sulfide production with a microbial consortium isolated from marine sediments offshore","volume":"10","author":"Briones-Gallardo","year":"2022","journal-title":"J. Mar. Sci. Eng."},{"key":"10.1016\/j.ecoenv.2023.115683_bib9","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/j.aquaculture.2010.05.020","article-title":"Chemical use in salmon aquaculture: a review of current practices and possible environmental effects","volume":"306","author":"Burridge","year":"2010","journal-title":"Aquaculture"},{"key":"10.1016\/j.ecoenv.2023.115683_bib10","doi-asserted-by":"crossref","first-page":"1338","DOI":"10.1016\/j.icesjms.2006.04.021","article-title":"A review of the impacts of salmonid farming on marine coastal ecosystems in the southeast Pacific","volume":"63","author":"Buschmann","year":"2006","journal-title":"ICES J. Mar. Sci."},{"key":"10.1016\/j.ecoenv.2023.115683_bib11","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1038\/nmeth.3869","article-title":"DADA2: High-resolution sample inference from Illumina amplicon data","volume":"13","author":"Callahan","year":"2016","journal-title":"Nat. Methods"},{"key":"10.1016\/j.ecoenv.2023.115683_bib12","unstructured":"Chang, B.D., Page, F.H., Hamoutene, D.H., 2022. Use of drugs and pesticides by the Canadian marine finfish aquaculture industry in 2016\u20132018. DFO Can. Sci. Advis. Sec. Res. Doc. 2021\/037, ix+119 p."},{"key":"10.1016\/j.ecoenv.2023.115683_bib13","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s40168-019-0714-6","article-title":"A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments","volume":"7","author":"Chen","year":"2019","journal-title":"Microbiome"},{"key":"10.1016\/j.ecoenv.2023.115683_bib14","doi-asserted-by":"crossref","DOI":"10.1016\/j.marpolbul.2022.113603","article-title":"Shifts in benthic bacterial communities associated with farming stages and a microbiological proxy for assessing sulfidic sediment conditions at fish farms","volume":"178","author":"Choi","year":"2022","journal-title":"Mar. Pollut. Bull."},{"key":"10.1016\/j.ecoenv.2023.115683_bib15","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquaculture.2019.734832","article-title":"Effects of a salmon fish farm on benthic habitats in a high-energy hydrodynamic system: the case of the Rade de Cherbourg (English Channel)","volume":"518","author":"Dauvin","year":"2020","journal-title":"Aquaculture"},{"key":"10.1016\/j.ecoenv.2023.115683_bib16","doi-asserted-by":"crossref","first-page":"5069","DOI":"10.1128\/AEM.03006-05","article-title":"Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB","volume":"72","author":"DeSantis","year":"2006","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib17","doi-asserted-by":"crossref","first-page":"2039","DOI":"10.1038\/s41396-018-0148-3","article-title":"Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats","volume":"12","author":"Dong","year":"2018","journal-title":"ISME J."},{"key":"10.1016\/j.ecoenv.2023.115683_bib18","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1093\/femsec\/fiv089","article-title":"Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high-throughput sequencing","volume":"91","author":"Dowle","year":"2015","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib19","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1016\/j.gca.2015.01.014","article-title":"Spatial distributions of sulphur species and sulphate-reducing bacteria provide insights into sulphur redox cycling and biodegradation hot-spots in a hydrocarbon-contaminated aquifer","volume":"156","author":"Einsiedl","year":"2015","journal-title":"Geochim. Cosmochim. Acta"},{"key":"10.1016\/j.ecoenv.2023.115683_bib20","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.637526","article-title":"Comparison of two 16S rRNA primers (V3\u2013V4 and V4\u2013V5) for studies of arctic microbial communities","volume":"12","author":"Fadeev","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib21","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/0006-3207(92)91201-3","article-title":"Conservation evaluation and phylogenetic diversity","volume":"61","author":"Faith","year":"1992","journal-title":"Biol. Conserv."},{"key":"10.1016\/j.ecoenv.2023.115683_bib22","doi-asserted-by":"crossref","unstructured":"FAO, 2022. The State of World Fisheries and Aquaculture 2022. State World Fish. Aquac. 2022. https:\/\/doi.org\/10.4060\/cc0461en.","DOI":"10.4060\/cc0461en"},{"key":"10.1016\/j.ecoenv.2023.115683_bib23","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1111\/jam.14291","article-title":"Diversity and composition of the gut microbiota of Atlantic salmon (Salmo salar) farmed in Irish waters","volume":"127","author":"Fogarty","year":"2019","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib24","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.637811","article-title":"Global trends of benthic bacterial diversity and community composition along organic enrichment gradients of salmon farms","volume":"12","author":"Fr\u00fche","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib25","doi-asserted-by":"crossref","first-page":"2355","DOI":"10.1016\/j.watres.2012.02.004","article-title":"Occurrence of sulfonamide and tetracycline-resistant bacteria and resistance genes in aquaculture environment","volume":"46","author":"Gao","year":"2012","journal-title":"Water Res"},{"key":"10.1016\/j.ecoenv.2023.115683_bib26","doi-asserted-by":"crossref","first-page":"138","DOI":"10.1002\/naaq.10166","article-title":"Minimal inhibitory concentration values of oxytetracycline for bacterial pathogens isolated from warmwater fishes","volume":"83","author":"Gaunt","year":"2021","journal-title":"N. Am. J. Aquac."},{"key":"10.1016\/j.ecoenv.2023.115683_bib27","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.151190","article-title":"Effects of aquaculture waste feeds and antibiotics on marine benthic ecosystems in the Mediterranean Sea","volume":"806","author":"Gonz\u00e1lez-Gaya","year":"2022","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ecoenv.2023.115683_bib28","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1038\/ismej.2012.143","article-title":"Ocean currents shape the microbiome of Arctic marine sediments","volume":"7","author":"Hamdan","year":"2013","journal-title":"ISME J."},{"key":"10.1016\/j.ecoenv.2023.115683_bib29","doi-asserted-by":"crossref","DOI":"10.1016\/j.chemosphere.2022.137635","article-title":"Metabolization of emamectin benzoate into desmethyl emamectin benzoate in spiked marine sediments","volume":"313","author":"Hamoutene","year":"2023","journal-title":"Chemosphere"},{"key":"10.1016\/j.ecoenv.2023.115683_bib30","doi-asserted-by":"crossref","DOI":"10.1016\/j.marpolbul.2021.112557","article-title":"Assessing trace-elements as indicators of marine finfish aquaculture across three distinct Canadian coastal regions","volume":"169","author":"Hamoutene","year":"2021","journal-title":"Mar. Pollut. Bull."},{"key":"10.1016\/j.ecoenv.2023.115683_bib31","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-022-08538-w","article-title":"Drug and pesticide usage for sea lice treatment in salmon aquaculture sites in a Canadian province from 2016 to 2019","volume":"12","author":"Hamoutene","year":"2022","journal-title":"Sci. Rep."},{"key":"10.1016\/j.ecoenv.2023.115683_bib32","doi-asserted-by":"crossref","DOI":"10.3389\/fmars.2018.00228","article-title":"Measurement of aquaculture chemotherapeutants in flocculent matter collected at a hard-bottom dominated finfish site on the south coast of Newfoundland (Canada) after 2 years of fallow","volume":"5","author":"Hamoutene","year":"2018","journal-title":"Front. Mar. Sci."},{"key":"10.1016\/j.ecoenv.2023.115683_bib33","doi-asserted-by":"crossref","first-page":"3158","DOI":"10.1111\/mec.15814","article-title":"Biotic signals associated with benthic impacts of salmon farms from eDNA metabarcoding of sediments","volume":"30","author":"He","year":"2021","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib34","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1007\/b136010","article-title":"Organic enrichment from marine finfish aquaculture and effects on sediment biogeochemical processes","author":"Holmer","year":"2005","journal-title":"Environ. Eff. Mar. Finfish Aquac."},{"key":"10.1016\/j.ecoenv.2023.115683_bib35","doi-asserted-by":"crossref","first-page":"3059","DOI":"10.1093\/nar\/gkf436","article-title":"MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform","volume":"30","author":"Katoh","year":"2002","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.ecoenv.2023.115683_bib36","doi-asserted-by":"crossref","first-page":"161","DOI":"10.3354\/aei00301","article-title":"Resilience of dynamic coastal benthic ecosystems in response to large-scale finfish farming","volume":"11","author":"Keeley","year":"2019","journal-title":"Aquac. Environ. Interact."},{"key":"10.1016\/j.ecoenv.2023.115683_bib37","doi-asserted-by":"crossref","first-page":"1044","DOI":"10.1016\/j.ecolind.2017.11.014","article-title":"Development and preliminary validation of a multi-trophic metabarcoding biotic index for monitoring benthic organic enrichment","volume":"85","author":"Keeley","year":"2018","journal-title":"Ecol. Indic."},{"key":"10.1016\/j.ecoenv.2023.115683_bib38","doi-asserted-by":"crossref","DOI":"10.1016\/j.marpolbul.2023.114654","article-title":"Relationship between in feed drugs, antibiotics and organic enrichment in marine sediments at Canadian Atlantic salmon aquaculture sites","volume":"188","author":"Kingsbury","year":"2023","journal-title":"Mar. Pollut. Bull."},{"key":"10.1016\/j.ecoenv.2023.115683_bib39","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gks808","article-title":"Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies","volume":"41","author":"Klindworth","year":"2013","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.ecoenv.2023.115683_bib40","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1016\/j.chemosphere.2008.11.086","article-title":"Antibiotics in the aquatic environment \u2013 a review - Part I","volume":"75","author":"K\u00fcmmerer","year":"2009","journal-title":"Chemosphere"},{"issue":"1","key":"10.1016\/j.ecoenv.2023.115683_bib41","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1038\/s41598-020-57594-7","article-title":"Sea lice exposure to non-lethal levels of emamectin benzoate after treatments: a potential risk factor for drug resistance","volume":"10","author":"Lam","year":"2020","journal-title":"Sci. Rep."},{"key":"10.1016\/j.ecoenv.2023.115683_bib42","doi-asserted-by":"crossref","first-page":"7774","DOI":"10.1021\/es5005329","article-title":"Do antiparasitic medicines used in aquaculture pose a risk to the Norwegian aquatic environment?","volume":"48","author":"Langford","year":"2014","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib43","doi-asserted-by":"crossref","DOI":"10.1128\/msystems.00864-22","article-title":"Frequent occurrence and metabolic versatility of Marinifilaceae bacteria as key players in organic matter mineralization in global deep seas","volume":"7","author":"Li","year":"2022","journal-title":"mSystems"},{"key":"10.1016\/j.ecoenv.2023.115683_bib44","doi-asserted-by":"crossref","first-page":"1397","DOI":"10.1007\/s11274-015-1891-5","article-title":"Metaproteomic analysis of bacterial communities in marine mudflat aquaculture sediment","volume":"31","author":"Lin","year":"2015","journal-title":"World J. Microbiol. Biotechnol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib45","doi-asserted-by":"crossref","DOI":"10.3390\/nu12051474","article-title":"The firmicutes\/bacteroidetes ratio: a relevant marker of gut dysbiosis in obese patients?","volume":"12","author":"Magne","year":"2020","journal-title":"Nutrients"},{"key":"10.1016\/j.ecoenv.2023.115683_bib46","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1186\/1471-2180-9-123","article-title":"The firmicutes\/bacteroidetes ratio of the human microbiota changes with age","volume":"9","author":"Mariat","year":"2009","journal-title":"BMC Microbiol"},{"key":"10.1016\/j.ecoenv.2023.115683_bib47","doi-asserted-by":"crossref","first-page":"10","DOI":"10.14806\/ej.17.1.200","article-title":"Cutadapt removes adapter sequences from high-throughput sequencing reads","volume":"17","author":"Martin","year":"2011","journal-title":"EMBnet. J."},{"key":"10.1016\/j.ecoenv.2023.115683_bib48","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1007\/s10533-015-0119-y","article-title":"Effect of sediment grain size and bioturbation on decomposition of organic matter from aquaculture","volume":"125","author":"Martinez-Garcia","year":"2015","journal-title":"Biogeochemistry"},{"key":"10.1016\/j.ecoenv.2023.115683_bib49","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1093\/gbe\/evu050","article-title":"A phylogenomic view of ecological specialization in the lachnospiraceae, a family of digestive tract-associated bacteria","volume":"6","author":"Meehan","year":"2014","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib50","doi-asserted-by":"crossref","first-page":"1605","DOI":"10.1111\/are.15014","article-title":"Taxonomy and diversity of bacterial communities associated with marine sediments from Chilean salmonid farms","volume":"52","author":"Miranda","year":"2021","journal-title":"Aquac. Res."},{"key":"10.1016\/j.ecoenv.2023.115683_bib51","doi-asserted-by":"crossref","first-page":"2798","DOI":"10.1099\/ijs.0.062463-0","article-title":"Spirochaeta psychrophila sp. nov., a psychrophilic spirochaete isolated from subseafloor sediment, and emended description of the genus Spirochaeta","volume":"64","author":"Miyazaki","year":"2014","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib52","doi-asserted-by":"crossref","first-page":"634","DOI":"10.1080\/03601234.2016.1181917","article-title":"Study of spatial and temporal distribution of antimicrobial in water and sediments from caging fish farms by on-line SPE-LC-MS\/MS","volume":"51","author":"Monteiro","year":"2016","journal-title":"J. Environ. Sci. Heal."},{"key":"10.1016\/j.ecoenv.2023.115683_bib53","doi-asserted-by":"crossref","first-page":"586","DOI":"10.1111\/j.1574-6941.2009.00768.x","article-title":"Community dynamics within a bacterial consortium during growth on toluene under sulfate-reducing conditions","volume":"70","author":"M\u00fcller","year":"2009","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib54","unstructured":"Murphy, G.M., Robinson, S.M.C., 2022. Review of antibiotic resistance genes (ARGs) in salmon aquaculture and empirical data on spatial and seasonal trends in the Bay of Fundy. DFO Can. Sci. Advis. Sec. Res. Doc. 2022\/061, v + 72 p."},{"key":"10.1016\/j.ecoenv.2023.115683_bib55","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0092702","article-title":"Sulphonamide and trimethoprim resistance genes persist in sediments at Baltic Sea aquaculture farms but are not detected in the surrounding environment","volume":"9","author":"Muziasari","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.ecoenv.2023.115683_bib56","doi-asserted-by":"crossref","DOI":"10.1093\/femsec\/fiw052","article-title":"Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments","volume":"92","author":"Muziasari","year":"2016","journal-title":"FEMS Microbiol. Ecol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib57","doi-asserted-by":"crossref","first-page":"326","DOI":"10.1016\/j.marenvres.2009.12.007","article-title":"Effects of fish farming on the biological and geochemical properties of muddy and sandy sediments in the Mediterranean Sea","volume":"69","author":"Papageorgiou","year":"2010","journal-title":"Mar. Environ. Res."},{"key":"10.1016\/j.ecoenv.2023.115683_bib58","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2022.115229","article-title":"A microcosm study of microbial community profiles during sediment remediation using pyrolyzed oyster shells","volume":"316","author":"Patil","year":"2022","journal-title":"J. Environ. Manag."},{"key":"10.1016\/j.ecoenv.2023.115683_bib59","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1016\/0022-5193(66)90013-0","article-title":"The measurement of diversity in different types of biological collections","volume":"13","author":"Pielou","year":"1966","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib60","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0009490","article-title":"FastTree 2 \u2013 approximately maximum-likelihood trees for large alignments","volume":"5","author":"Price","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.ecoenv.2023.115683_bib61","doi-asserted-by":"crossref","first-page":"7188","DOI":"10.1093\/nar\/gkm864","article-title":"SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB","volume":"35","author":"Pruesse","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ecoenv.2023.115683_bib62","doi-asserted-by":"crossref","first-page":"524","DOI":"10.3389\/fmars.2020.00524","article-title":"Temporal changes in microbial communities beneath fish farm sediments are related to organic enrichment and fish biomass over a production cycle","volume":"7","author":"Quero","year":"2020","journal-title":"Front. Mar. Sci."},{"key":"10.1016\/j.ecoenv.2023.115683_bib63","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-021-90553-4","article-title":"Identification of mucin degraders of the human gut microbiota","volume":"11","author":"Raimondi","year":"2021","journal-title":"Sci. Rep."},{"key":"10.1016\/j.ecoenv.2023.115683_bib64","doi-asserted-by":"crossref","first-page":"295","DOI":"10.1128\/JB.00874-09","article-title":"Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47","volume":"192","author":"Selesi","year":"2010","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib65","unstructured":"Shannon, C.E., Weaver, W., 1949. The mathematical theory of communication. The University of Illinois Press."},{"key":"10.1016\/j.ecoenv.2023.115683_bib66","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1016\/j.marpolbul.2017.11.065","article-title":"Environmental DNA metabarcoding of benthic bacterial comamunities indicates the benthic footprint of salmon aquaculture.","volume":"127","author":"Stoeck","year":"2018","journal-title":"Mar. Pollut. Bull."},{"key":"10.1016\/j.ecoenv.2023.115683_bib67","doi-asserted-by":"crossref","first-page":"3403","DOI":"10.1099\/ijsem.0.002130","article-title":"Description of oceanispirochaeta sediminicola gen. Nov., sp. nov., an obligately anaerobic bacterium isolated from coastal marine sediments, and reclassification of spirochaeta litoralis as oceanispirochaeta litoralis comb. nov","volume":"67","author":"Subhash","year":"2017","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib68","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1016\/j.marpolbul.2016.11.041","article-title":"Occurrence of antiparasitic pesticides in sediments near salmon farms in the northern Chilean Patagonia","volume":"115","author":"Tucca","year":"2017","journal-title":"Mar. Pollut. Bull."},{"key":"10.1016\/j.ecoenv.2023.115683_bib69","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2020.01621","article-title":"Cortisol-related signatures of stress in the fish microbiome","volume":"11","author":"Uren Webster","year":"2020","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib70","doi-asserted-by":"crossref","first-page":"637","DOI":"10.3354\/aei00204","article-title":"Bacterial community composition of flocculent matter under a salmonid aquaculture site in Newfoundland, Canada","volume":"8","author":"Verhoeven","year":"2016","journal-title":"Aquac. Environ. Interact."},{"key":"10.1016\/j.ecoenv.2023.115683_bib71","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2018.03054","article-title":"Temporal bacterial surveillance of salmon aquaculture sites indicates a long lasting benthic impact with minimal recovery","volume":"9","author":"Verhoeven","year":"2018","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.ecoenv.2023.115683_bib72","first-page":"16","article-title":"Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region","volume":"3","author":"Wang","year":"2021","journal-title":"Anim. Micro"},{"key":"10.1016\/j.ecoenv.2023.115683_bib73","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.03064-18","article-title":"Spatial heterogeneity of Vibrio spp. in sediments of Chinese marginal seas","volume":"85","author":"Wang","year":"2019","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.ecoenv.2023.115683_bib74","doi-asserted-by":"crossref","first-page":"488","DOI":"10.1016\/j.aquaculture.2018.10.036","article-title":"Avermectin treatment for Lepeophtheirus salmonis: Impacts on host (Salmo salar) and parasite immunophysiology","volume":"501","author":"Whyte","year":"2019","journal-title":"Aquaculture"},{"key":"10.1016\/j.ecoenv.2023.115683_bib75","doi-asserted-by":"crossref","unstructured":"Wickham, H., 2016. ggplot2: Elegant graphics for data analysis. Springer-Verlag New York.","DOI":"10.1007\/978-3-319-24277-4_9"},{"key":"10.1016\/j.ecoenv.2023.115683_bib76","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.143799","article-title":"Spatial patterns and co-occurrence networks of microbial communities related to environmental heterogeneity in deep-sea surface sediments around Yap Trench, Western Pacific Ocean","volume":"759","author":"Zhang","year":"2021","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ecoenv.2023.115683_bib77","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1016\/j.ecoenv.2018.05.045","article-title":"Metagenomic insights into the effect of oxytetracycline on microbial structures, functions and functional genes in sediment denitrification","volume":"161","author":"Zou","year":"2018","journal-title":"Ecotoxicol. Environ. Saf."}],"container-title":["Ecotoxicology and Environmental Safety"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0147651323011879?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0147651323011879?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,12,15]],"date-time":"2024-12-15T01:04:10Z","timestamp":1734224650000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0147651323011879"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,12]]},"references-count":77,"alternative-id":["S0147651323011879"],"URL":"https:\/\/doi.org\/10.1016\/j.ecoenv.2023.115683","relation":{},"ISSN":["0147-6513"],"issn-type":[{"value":"0147-6513","type":"print"}],"subject":[],"published":{"date-parts":[[2023,12]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Descriptive analyses of bacterial communities in marine sediment microcosms spiked with fish wastes, emamectin benzoate, and oxytetracycline","name":"articletitle","label":"Article Title"},{"value":"Ecotoxicology and Environmental Safety","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ecoenv.2023.115683","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Crown Copyright \u00a9 2023 Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"115683"}}