{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T16:04:29Z","timestamp":1789574669172,"version":"build-2803163510"},"reference-count":44,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100006769","name":"Russian Science Foundation","doi-asserted-by":"publisher","award":["26-14-00261"],"award-info":[{"award-number":["26-14-00261"]}],"id":[{"id":"10.13039\/501100006769","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["European Journal of Protistology"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.ejop.2026.126221","type":"journal-article","created":{"date-parts":[[2026,8,12]],"date-time":"2026-08-12T23:22:44Z","timestamp":1786576964000},"page":"126221","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["A novel jakobid genus from the soil of an indoor plant"],"prefix":"10.1016","volume":"105","author":[{"ORCID":"https:\/\/orcid.org\/0009-0002-3082-6834","authenticated-orcid":false,"given":"German A.","family":"Sozonov","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5906-109X","authenticated-orcid":false,"given":"Anastasiia","family":"Borodina","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7883-3999","authenticated-orcid":false,"given":"Elena A.","family":"Gerasimova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4882-2148","authenticated-orcid":false,"given":"Denis V.","family":"Tikhonenkov","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"1","key":"10.1016\/j.ejop.2026.126221_bib216","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1111\/jeu.12691","article-title":"Revisions to the classification, nomenclature, and diversity of eukaryotes","volume":"66","author":"Adl","year":"2019","journal-title":"J. Eukaryot. Microbiol."},{"issue":"6","key":"10.1016\/j.ejop.2026.126221_bb0005","doi-asserted-by":"crossref","first-page":"2393","DOI":"10.1099\/ijs.0.63229-0","article-title":"Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa)","volume":"54","author":"Bass","year":"2004","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.ejop.2026.126221_bb0010","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.20071","article-title":"Rhodelphis edaphicus sp. nov.\u2014a new lineage of predatory archaeplastids from agricultural soil","volume":"13","author":"Belyaev","year":"2025","journal-title":"PeerJ"},{"issue":"8","key":"10.1016\/j.ejop.2026.126221_bb0015","doi-asserted-by":"crossref","first-page":"2032","DOI":"10.1016\/j.soilbio.2008.04.011","article-title":"\u2018David and Goliath\u2019 of the soil food web \u2013 flagellates that kill nematodes","volume":"40","author":"Bj\u00f8rnlund","year":"2008","journal-title":"Soil Biol. Biochem."},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0020","doi-asserted-by":"crossref","first-page":"418","DOI":"10.1093\/gbe\/evt008","article-title":"Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists","volume":"5","author":"Burger","year":"2013","journal-title":"Genome Biol. Evol."},{"issue":"7","key":"10.1016\/j.ejop.2026.126221_bb0025","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1038\/nmeth.3869","article-title":"DADA2: high-resolution sample inference from Illumina amplicon data","volume":"13","author":"Callahan","year":"2016","journal-title":"Nat. Methods"},{"issue":"15","key":"10.1016\/j.ejop.2026.126221_bb0030","doi-asserted-by":"crossref","first-page":"1972","DOI":"10.1093\/bioinformatics\/btp348","article-title":"trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses","volume":"25","author":"Capella-Guti\u00e9rrez","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.ejop.2026.126221_bb0035","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2021.108452","article-title":"Concurrent and rapid recovery of bacteria and protist communities in Canadian boreal forest ecosystems following wildfire","volume":"163","author":"Dai","year":"2021","journal-title":"Soil Biol. Biochem."},{"issue":"62","key":"10.1016\/j.ejop.2026.126221_bb0040","doi-asserted-by":"crossref","first-page":"35512","DOI":"10.1039\/C8RA05328F","article-title":"High purity and viability cell separation of a bacterivorous jakobid flagellate based on a steep velocity gradient induced soft inertial force","volume":"8","author":"Deng","year":"2018","journal-title":"RSC Adv."},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0045","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1111\/j.1550-7408.1993.tb04900.x","article-title":"Reclinomonas americana n. g., n. sp., a new freshwater heterotrophic flagellate","volume":"40","author":"Flavin","year":"1993","journal-title":"J. Eukaryot. Microbiol."},{"issue":"4","key":"10.1016\/j.ejop.2026.126221_bb0050","doi-asserted-by":"crossref","DOI":"10.1093\/gbe\/evad058","article-title":"Maturases and group II introns in the mitochondrial genomes of the deepest jakobid branch","volume":"15","author":"Galindo","year":"2023","journal-title":"Genome Biol. Evol."},{"issue":"D1","key":"10.1016\/j.ejop.2026.126221_bb0055","doi-asserted-by":"crossref","first-page":"D597","DOI":"10.1093\/nar\/gks1160","article-title":"The protist ribosomal reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy","volume":"41","author":"Guillou","year":"2013","journal-title":"Nucleic Acids Res."},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0060","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1016\/j.protis.2008.11.007","article-title":"Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa)","volume":"160","author":"Howe","year":"2009","journal-title":"Protist"},{"key":"10.1016\/j.ejop.2026.126221_bb0065","series-title":"International Code of Zoological Nomenclature","author":"ICZN","year":"1999"},{"issue":"6","key":"10.1016\/j.ejop.2026.126221_bb0070","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1038\/nmeth.4285","article-title":"ModelFinder: fast model selection for accurate phylogenetic estimates","volume":"14","author":"Kalyaanamoorthy","year":"2017","journal-title":"Nat. Methods"},{"issue":"4","key":"10.1016\/j.ejop.2026.126221_bb0075","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","article-title":"MAFFT multiple sequence alignment software version 7: improvements in performance and usability","volume":"30","author":"Katoh","year":"2013","journal-title":"Mol. Biol. Evol."},{"issue":"6632","key":"10.1016\/j.ejop.2026.126221_bb0080","doi-asserted-by":"crossref","first-page":"493","DOI":"10.1038\/387493a0","article-title":"An ancestral mitochondrial DNA resembling a eubacterial genome in miniature","volume":"387","author":"Lang","year":"1997","journal-title":"Nature"},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0085","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1111\/j.1550-7408.2005.00081.x","article-title":"Andalucia (n. gen.) - the deepest branch within jakobids (Jakobida; Excavata), based on morphological and molecular study of a new flagellate from soil","volume":"53","author":"Lara","year":"2006","journal-title":"J. Eukaryot. Microbiol."},{"issue":"3","key":"10.1016\/j.ejop.2026.126221_bb0090","doi-asserted-by":"crossref","first-page":"R112","DOI":"10.1016\/j.cub.2022.12.016","article-title":"Eukaryotic evolution: deep phylogeny does not imply morphological novelty","volume":"33","author":"Leander","year":"2023","journal-title":"Curr. Biol."},{"key":"10.1016\/j.ejop.2026.126221_bb0095","series-title":"Molecular Cloning: A Laboratory Manual","author":"Maniatis","year":"1982"},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0100","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1016\/0378-1119(88)90066-2","article-title":"The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions","volume":"71","author":"Medlin","year":"1988","journal-title":"Gene"},{"issue":"4","key":"10.1016\/j.ejop.2026.126221_bb0105","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1134\/S1995082914040130","article-title":"Structure of the flagellar apparatus of the bacterivorous flagellate Histiona aroides Pascher, 1943 (Jakobida, Excavata)","volume":"7","author":"Mylnikov","year":"2014","journal-title":"Inland Water Biol."},{"issue":"1","key":"10.1016\/j.ejop.2026.126221_bb0110","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1093\/molbev\/msu300","article-title":"IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies","volume":"32","author":"Nguyen","year":"2015","journal-title":"Mol. Biol. Evol."},{"issue":"4","key":"10.1016\/j.ejop.2026.126221_bb0115","doi-asserted-by":"crossref","first-page":"337","DOI":"10.1016\/S0932-4739(97)80045-4","article-title":"Ultrastructure of trophozoites, zoospores and cysts of Reclinomonas americana Flavin & Nerad, 1993 (Protista incertae sedis: Histionidae)","volume":"33","author":"O\u2019Kelly","year":"1997","journal-title":"Eur. J. Protistol."},{"issue":"4","key":"10.1016\/j.ejop.2026.126221_bb0120","doi-asserted-by":"crossref","first-page":"eaax8787","DOI":"10.1126\/sciadv.aax8787","article-title":"The global-scale distributions of soil protists and their contributions to belowground systems","volume":"6","author":"Oliverio","year":"2020","journal-title":"Sci. Adv."},{"key":"10.1016\/j.ejop.2026.126221_bb0125","doi-asserted-by":"crossref","first-page":"1288","DOI":"10.3389\/fmicb.2015.01288","article-title":"Combined culture-based and culture-independent approaches provide insights into diversity of jakobids, an extremely plesiomorphic eukaryotic lineage","volume":"6","author":"P\u00e1nek","year":"2015","journal-title":"Front. Microbiol."},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0130","doi-asserted-by":"crossref","first-page":"381","DOI":"10.1017\/S0025315400035487","article-title":"Jakoba libera (Ruinen, 1938), a heterotrophic flagellate from deep oceanic sediments","volume":"70","author":"Patterson","year":"1990","journal-title":"J. Mar. Biol. Assoc. UK"},{"issue":"3","key":"10.1016\/j.ejop.2026.126221_bb0135","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1093\/sysbio\/sys029","article-title":"MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space","volume":"61","author":"Ronquist","year":"2012","journal-title":"Syst. Biol."},{"key":"10.1016\/j.ejop.2026.126221_bb0140","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.137228","article-title":"Land use as a driver for protist community structure in soils under agricultural use across Europe","volume":"717","author":"Santos","year":"2020","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ejop.2026.126221_bb0145","doi-asserted-by":"crossref","first-page":"240","DOI":"10.3389\/fmicb.2019.00240","article-title":"Changes in trophic groups of protists with conversion of rainforest into rubber and oil palm plantations","volume":"10","author":"Schulz","year":"2019","journal-title":"Front. Microbiol."},{"issue":"4","key":"10.1016\/j.ejop.2026.126221_bb0150","article-title":"Response of protists to nitrogen addition, arbuscular mycorrhizal fungi manipulation, and mesofauna reduction in a tropical montane rainforest in southern Ecuador","volume":"70","author":"Schulz","year":"2023","journal-title":"J. Eukaryot. Microbiol."},{"issue":"3","key":"10.1016\/j.ejop.2026.126221_bb0155","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1080\/10635150290069913","article-title":"An approximately unbiased test of phylogenetic tree selection","volume":"51","author":"Shimodaira","year":"2002","journal-title":"Syst. Biol."},{"issue":"6","key":"10.1016\/j.ejop.2026.126221_bb0160","doi-asserted-by":"crossref","first-page":"1759","DOI":"10.1099\/ijs.0.02578-0","article-title":"Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)","volume":"53","author":"Simpson","year":"2003","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.ejop.2026.126221_bb0165","series-title":"Handbook of the Protists","first-page":"1","article-title":"Jakobida","author":"Simpson","year":"2016"},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0170","doi-asserted-by":"crossref","DOI":"10.1098\/rsob.150239","article-title":"Moramonas marocensis gen. nov., sp. nov.: a jakobid flagellate isolated from desert soil with a bacteria-like, but bloated mitochondrial genome","volume":"6","author":"Strassert","year":"2016","journal-title":"Open Biol."},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0175","doi-asserted-by":"crossref","first-page":"518","DOI":"10.1093\/molbev\/msx281","article-title":"UFBoot2: improving the ultrafast bootstrap approximation","volume":"35","author":"Thi Hoang","year":"2017","journal-title":"Mol. Biol. Evol."},{"issue":"1","key":"10.1016\/j.ejop.2026.126221_bb0180","doi-asserted-by":"crossref","first-page":"15","DOI":"10.21685\/1680-0826-2020-14-1-2","article-title":"Predatory flagellates \u2013 the new recently discovered deep branches of the eukaryotic tree and their evolutionary and ecological significance","volume":"14","author":"Tikhonenkov","year":"2020","journal-title":"Protistology"},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0185","doi-asserted-by":"crossref","first-page":"220","DOI":"10.1111\/jeu.12271","article-title":"The morphology, ultrastructure and SSU rRNA gene sequence of a new freshwater flagellate, Neobodo borokensis n. sp. (Kinetoplastea, Excavata)","volume":"63","author":"Tikhonenkov","year":"2016","journal-title":"J. Eukaryot. Microbiol."},{"issue":"8","key":"10.1016\/j.ejop.2026.126221_bb0190","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0216188","article-title":"Ecological and evolutionary patterns in the enigmatic protist genus Percolomonas (Heterolobosea; Discoba) from diverse habitats","volume":"14","author":"Tikhonenkov","year":"2019","journal-title":"PLoS One"},{"issue":"1","key":"10.1016\/j.ejop.2026.126221_bb0195","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1016\/j.cub.2024.10.075","article-title":"Phylogenomics of neglected flagellated protists supports a revised eukaryotic tree of life","volume":"35","author":"Torruella","year":"2025","journal-title":"Curr. Biol."},{"issue":"4","key":"10.1016\/j.ejop.2026.126221_bb0200","doi-asserted-by":"crossref","first-page":"1347","DOI":"10.1111\/1755-0998.13322","article-title":"The Ocean barcode atlas: a web service to explore the biodiversity and biogeography of marine organisms","volume":"21","author":"Vernette","year":"2021","journal-title":"Mol. Ecol. Resour."},{"issue":"8060","key":"10.1016\/j.ejop.2026.126221_bb0205","doi-asserted-by":"crossref","first-page":"974","DOI":"10.1038\/s41586-025-08709-5","article-title":"A robustly rooted tree of eukaryotes reveals their excavate ancestry","volume":"640","author":"Williamson","year":"2025","journal-title":"Nature"},{"issue":"1","key":"10.1016\/j.ejop.2026.126221_bb0210","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-018-34504-6","article-title":"Ophirina amphinema n. gen., n. sp., a new deeply branching discobid with phylogenetic affinity to jakobids","volume":"8","author":"Yabuki","year":"2018","journal-title":"Sci. Rep."},{"issue":"2","key":"10.1016\/j.ejop.2026.126221_bb0215","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1111\/tpj.12145","article-title":"Evolution of microtubule organizing centers across the tree of eukaryotes","volume":"75","author":"Yubuki","year":"2013","journal-title":"Plant J."}],"container-title":["European Journal of Protistology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0932473926000428?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0932473926000428?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T15:08:00Z","timestamp":1789571280000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0932473926000428"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":44,"alternative-id":["S0932473926000428"],"URL":"https:\/\/doi.org\/10.1016\/j.ejop.2026.126221","relation":{},"ISSN":["0932-4739"],"issn-type":[{"value":"0932-4739","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A novel jakobid genus from the soil of an indoor plant","name":"articletitle","label":"Article Title"},{"value":"European Journal of Protistology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ejop.2026.126221","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier GmbH. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"126221"}}