{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,15]],"date-time":"2026-10-15T10:02:00Z","timestamp":1792058520277,"version":"4.4.0"},"reference-count":100,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100001501","name":"University Grants Commission","doi-asserted-by":"publisher","award":["F.16-6"],"award-info":[{"award-number":["F.16-6"]}],"id":[{"id":"10.13039\/501100001501","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001412","name":"Council of Scientific & Industrial Research","doi-asserted-by":"publisher","award":["OLP2005"],"award-info":[{"award-number":["OLP2005"]}],"id":[{"id":"10.13039\/501100001412","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001412","name":"Council of Scientific & Industrial Research","doi-asserted-by":"publisher","award":["MLP2019"],"award-info":[{"award-number":["MLP2019"]}],"id":[{"id":"10.13039\/501100001412","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001412","name":"Council of Scientific & Industrial Research","doi-asserted-by":"publisher","award":["7455"],"award-info":[{"award-number":["7455"]}],"id":[{"id":"10.13039\/501100001412","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Environmental Pollution"],"published-print":{"date-parts":[[2025,10]]},"DOI":"10.1016\/j.envpol.2025.126793","type":"journal-article","created":{"date-parts":[[2025,7,7]],"date-time":"2025-07-07T11:55:20Z","timestamp":1751889320000},"page":"126793","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":7,"special_numbering":"C","title":["Antibiotic-resistant bacteria in marine productive zones of the eastern Arabian Sea: Implications for human and environmental health"],"prefix":"10.1016","volume":"383","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5290-8454","authenticated-orcid":false,"given":"Ashutosh Shankar","family":"Parab","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0005-2051-4185","authenticated-orcid":false,"given":"Mayukhmita","family":"Ghose","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0178-7784","authenticated-orcid":false,"given":"Cathrine Sumathi","family":"Manohar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.envpol.2025.126793_bib1","doi-asserted-by":"crossref","DOI":"10.1016\/j.ese.2022.100223","article-title":"Seasonal hydrological dynamics govern lifestyle preference of aquatic antibiotic resistome","volume":"13","author":"Adyari","year":"2023","journal-title":"Environ. Sci. Ecotechnol."},{"key":"10.1016\/j.envpol.2025.126793_bib2","doi-asserted-by":"crossref","first-page":"W537","DOI":"10.1093\/nar\/gky379","article-title":"The galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update","volume":"46","author":"Afgan","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.envpol.2025.126793_bib3","doi-asserted-by":"crossref","first-page":"1144","DOI":"10.1038\/nmeth.3103","article-title":"Binning metagenomic contigs by coverage and composition","volume":"11","author":"Alneberg","year":"2014","journal-title":"Nat. Methods"},{"key":"10.1016\/j.envpol.2025.126793_bib4","doi-asserted-by":"crossref","first-page":"553","DOI":"10.17485\/ijst\/2011\/v4i5.26","article-title":"Studies on Mangalore coastal water pollution and its sources","volume":"4","author":"Andrade","year":"2011","journal-title":"IJST"},{"key":"10.1016\/j.envpol.2025.126793_bib5","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.00400-23","article-title":"Characterization of the environmental plasmidome of the Red Sea","volume":"11","author":"Androsiuk","year":"2023","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.envpol.2025.126793_bib6","doi-asserted-by":"crossref","first-page":"1594","DOI":"10.2166\/wh.2024.338","article-title":"Occurrence, virulence and AMR profile of Vibrio parahaemolyticus isolated from shellfish growing areas located along the south-west coast of India","volume":"22","author":"Antony","year":"2024","journal-title":"J. Water Health"},{"key":"10.1016\/j.envpol.2025.126793_bib7","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2022.154257","article-title":"Tracking bacterial pollution at a marine wastewater outfall site \u2013 a case study from Norway","volume":"829","author":"Bagi","year":"2022","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.envpol.2025.126793_bib8","doi-asserted-by":"crossref","first-page":"546","DOI":"10.1007\/s10661-023-11083-2","article-title":"Anthropogenic impact and antibiotic resistance among the indicator and pathogenic bacteria from several industrial and sewage discharge points along the coast from Pydibhimavaram to Tuni, east coast of India","volume":"195","author":"Behera","year":"2023","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.envpol.2025.126793_bib9","doi-asserted-by":"crossref","first-page":"107681","DOI":"10.1007\/s11356-023-29924-5","article-title":"Antimicrobial resistance and antagonistic features of bivalve-associated Vibrio parahaemolyticus from the south-west coast of India","volume":"30","author":"Bhaskaran","year":"2023","journal-title":"Environ. Sci. Pollut. Res."},{"key":"10.1016\/j.envpol.2025.126793_bib10","doi-asserted-by":"crossref","DOI":"10.1016\/j.envadv.2023.100409","article-title":"Emergence of environmental antibiotic resistance: mechanism, monitoring and management","volume":"13","author":"Bobate","year":"2023","journal-title":"Environ. Adv."},{"key":"10.1016\/j.envpol.2025.126793_bib11","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.envpol.2025.126793_bib12","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.176765","article-title":"Global quantification and distribution of antibiotic resistance genes in oceans and seas: anthropogenic impacts and regional variability","volume":"955","author":"Bonanno Ferraro","year":"2024","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.envpol.2025.126793_bib13","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2023.123274","article-title":"Tracking antimicrobial resistance indicator genes in wild flatfish from the English Channel and the North Sea area: a one health concern","volume":"343","author":"Bourdonnais","year":"2024","journal-title":"Environ. Poll."},{"key":"10.1016\/j.envpol.2025.126793_bib14","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1186\/s40168-024-01848-3","article-title":"Genomic representativeness and chimerism in large collections of SAGs and MAGs of marine prokaryoplankton","volume":"12","author":"Chang","year":"2024","journal-title":"Microbiome"},{"key":"10.1016\/j.envpol.2025.126793_bib15","doi-asserted-by":"crossref","first-page":"1925","DOI":"10.1093\/bioinformatics\/btz848","article-title":"GTDB-Tk: a toolkit to classify genomes with the genome taxonomy database","volume":"36","author":"Chaumeil","year":"2020","journal-title":"Bioinformatics"},{"key":"10.1016\/j.envpol.2025.126793_bib16","doi-asserted-by":"crossref","first-page":"338","DOI":"10.3389\/fmicb.2019.00338","article-title":"Antibiotics in the soil environment\u2014degradation and their impact on microbial activity and diversity","volume":"10","author":"Cyco\u0144","year":"2019","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.envpol.2025.126793_bib17","article-title":"Physical forcing controls spatial variability in primary production in the Indian Ocean","volume":"183","author":"Dalabehara","year":"2021","journal-title":"Deep-Sea Res. II: Top. Stud. Oceanogr."},{"key":"10.1016\/j.envpol.2025.126793_bib18","article-title":"Anthropogenic litter pollution in the mangrove blue carbon ecosystem: unveiling the spatial distribution, composition, source delineation and mitigation measures along the Goa coast, India","volume":"18","author":"Das","year":"2025","journal-title":"J. Hazard. Mater. Adv."},{"key":"10.1016\/j.envpol.2025.126793_bib19","series-title":"Water Pollution and Remediation: Organic Pollutants","first-page":"195","article-title":"Biodegradation of hydrocarbons in marine environment","author":"Denaro","year":"2021"},{"key":"10.1016\/j.envpol.2025.126793_bib20","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2022.160305","article-title":"Hypoxia triggers the proliferation of antibiotic resistance genes in a marine aquaculture system","volume":"859","author":"Deng","year":"2023","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.envpol.2025.126793_bib21","doi-asserted-by":"crossref","first-page":"654","DOI":"10.3390\/ijms25010654","article-title":"Large-scale biogeographical shifts of abundance of antibiotic resistance genes and marine bacterial communities as their carriers along a trophic gradient","volume":"25","author":"D\u017eelalija","year":"2024","journal-title":"IJMS"},{"key":"10.1016\/j.envpol.2025.126793_bib22","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00483-19","article-title":"Validating the AMRFinder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates","volume":"63","author":"Feldgarden","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.envpol.2025.126793_bib23","doi-asserted-by":"crossref","DOI":"10.1016\/j.ejphar.2019.172813","article-title":"Antimicrobial pharmaceuticals in the aquatic environment - occurrence and environmental implications","volume":"866","author":"Felis","year":"2020","journal-title":"Eur. J. Pharmacol."},{"key":"10.1016\/j.envpol.2025.126793_bib24","doi-asserted-by":"crossref","first-page":"3335","DOI":"10.3390\/w13233335","article-title":"Antibiotic resistance genes and potentially pathogenic bacteria in the central Adriatic Sea: are they connected to urban wastewater inputs?","volume":"13","author":"Fonti","year":"2021","journal-title":"Water"},{"key":"10.1016\/j.envpol.2025.126793_bib25","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2023.122885","article-title":"Environmental variables and its association with faecal coliform at Madh Island beaches of megacity Mumbai, India","volume":"341","author":"Fulke","year":"2024","journal-title":"Environ. Poll."},{"key":"10.1016\/j.envpol.2025.126793_bib26","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijantimicag.2021.106495","article-title":"Typology of interventions for antimicrobial use and antimicrobial resistance in aquaculture systems in low- and middle-income countries","volume":"59","author":"Garza","year":"2022","journal-title":"Int. J. Antimicrob. Agents"},{"key":"10.1016\/j.envpol.2025.126793_bib27","doi-asserted-by":"crossref","DOI":"10.1016\/j.genrep.2025.102239","article-title":"Comprehensive metagenomic analysis of bacterial diversity and antimicrobial resistance genes in coastal sediments from urbanized Indian cities","author":"Gawande","year":"2025","journal-title":"Gene Rep"},{"key":"10.1016\/j.envpol.2025.126793_bib28","doi-asserted-by":"crossref","DOI":"10.1128\/aem.00256-24","article-title":"Diversity in the utilization of different molecular classes of dissolved organic matter by heterotrophic marine bacteria","volume":"90","author":"Givati","year":"2024","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.envpol.2025.126793_bib29","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1186\/s40168-020-00990-y","article-title":"VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses","volume":"9","author":"Guo","year":"2021","journal-title":"Microbiome"},{"key":"10.1016\/j.envpol.2025.126793_bib30","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1128\/AAC.01310-13","article-title":"ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes","volume":"58","author":"Gupta","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.envpol.2025.126793_bib31","doi-asserted-by":"crossref","DOI":"10.1016\/j.jmb.2023.168016","article-title":"MGnify genomes: a resource for biome-specific microbial genome catalogues","volume":"435","author":"Gurbich","year":"2023","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.envpol.2025.126793_bib32","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","article-title":"QUAST: quality assessment tool for genome assemblies","volume":"29","author":"Gurevich","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.envpol.2025.126793_bib33","doi-asserted-by":"crossref","first-page":"649","DOI":"10.1007\/s00284-020-02315-6","article-title":"Evaluating the bacterial diversity from the southwest coast of India using fatty acid methyl ester profiles","volume":"78","author":"Isaacs","year":"2021","journal-title":"Curr. Microbiol."},{"key":"10.1016\/j.envpol.2025.126793_bib34","doi-asserted-by":"crossref","first-page":"D566","DOI":"10.1093\/nar\/gkw1004","article-title":"CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database","volume":"45","author":"Jia","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.envpol.2025.126793_bib35","doi-asserted-by":"crossref","first-page":"2316","DOI":"10.3390\/pr12112316","article-title":"Green medicine: advancing antimicrobial solutions with diverse terrestrial and marine plant-derived compounds","volume":"12","author":"Jo","year":"2024","journal-title":"Processes"},{"key":"10.1016\/j.envpol.2025.126793_bib36","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.7359","article-title":"MetaBAT2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies","volume":"7","author":"Kang","year":"2019","journal-title":"PeerJ"},{"key":"10.1016\/j.envpol.2025.126793_bib37","doi-asserted-by":"crossref","DOI":"10.29037\/ajstd.619","article-title":"Spatio-temporal variations in bacterial abundance with an emphasis on fecal indicator bacteria and Vibrio spp. in and around Visakhapatnam port, east coast of India","volume":"37","author":"Khandeparker","year":"2020","journal-title":"AJSTD"},{"key":"10.1016\/j.envpol.2025.126793_bib38","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1038\/s12276-021-00569-z","article-title":"Antibiotic resistome from the one-health perspective: understanding and controlling antimicrobial resistance transmission","volume":"53","author":"Kim","year":"2021","journal-title":"Exp. Mol. Med."},{"key":"10.1016\/j.envpol.2025.126793_bib39","doi-asserted-by":"crossref","first-page":"e35","DOI":"10.1093\/nar\/gkx1321","article-title":"PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures","volume":"46","author":"Krawczyk","year":"2018","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.envpol.2025.126793_bib40","doi-asserted-by":"crossref","DOI":"10.1016\/j.micpath.2023.106182","article-title":"Role of bacterial efflux pump proteins in antibiotic resistance across microbial species","volume":"181","author":"Kumawat","year":"2023","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.envpol.2025.126793_bib41","doi-asserted-by":"crossref","first-page":"2362","DOI":"10.3390\/w16172362","article-title":"Antibiotic resistance and aquatic systems: importance in public health","volume":"16","author":"Lajqi Berisha","year":"2024","journal-title":"Water"},{"key":"10.1016\/j.envpol.2025.126793_bib42","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.1923","article-title":"Fast gapped-read alignment with Bowtie 2","volume":"9","author":"Langmead","year":"2012","journal-title":"Nat. Methods"},{"key":"10.1016\/j.envpol.2025.126793_bib43","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1038\/s41579-021-00649-x","article-title":"Antibiotic resistance in the environment","volume":"20","author":"Larsson","year":"2022","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.envpol.2025.126793_bib44","doi-asserted-by":"crossref","first-page":"1674","DOI":"10.1093\/bioinformatics\/btv033","article-title":"MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph","volume":"31","author":"Li","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.envpol.2025.126793_bib45","doi-asserted-by":"crossref","DOI":"10.1016\/j.marenvres.2023.105978","article-title":"Dissemination of antibiotic resistance genes from the Pearl River estuary to adjacent coastal areas","volume":"188","author":"Li","year":"2023","journal-title":"Mar. Environ. Res."},{"key":"10.1016\/j.envpol.2025.126793_bib46","doi-asserted-by":"crossref","first-page":"9149","DOI":"10.1021\/acs.est.1c08918","article-title":"Antimicrobial resistance monitoring of water environments: a framework for standardized methods and quality control","volume":"56","author":"Liguori","year":"2022","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.envpol.2025.126793_bib47","doi-asserted-by":"crossref","first-page":"1741","DOI":"10.1007\/s10653-020-00759-0","article-title":"Impact factors of the accumulation, migration and spread of antibiotic resistance in the environment","volume":"43","author":"Lin","year":"2021","journal-title":"Environ. Geochem. Health"},{"key":"10.1016\/j.envpol.2025.126793_bib48","doi-asserted-by":"crossref","first-page":"1154","DOI":"10.3390\/antibiotics12071154","article-title":"The spatial\u2013temporal effects of bacterial growth substrates on antibiotic resistance gene spread in the biofilm","volume":"12","author":"Liu","year":"2023","journal-title":"Antibiotics"},{"key":"10.1016\/j.envpol.2025.126793_bib49","doi-asserted-by":"crossref","first-page":"19823","DOI":"10.1007\/s11356-015-5098-y","article-title":"Antimicrobial resistance of Pseudomonas spp. isolated from wastewater and wastewater-impacted marine coastal zone","volume":"22","author":"Luczkiewicz","year":"2015","journal-title":"Environ. Sci. Pollut. Res."},{"key":"10.1016\/j.envpol.2025.126793_bib50","doi-asserted-by":"crossref","DOI":"10.1016\/j.chemosphere.2020.126697","article-title":"Vessel transport of antibiotic resistance genes across oceans and its implications for ballast water management","volume":"253","author":"Lv","year":"2020","journal-title":"Chemosphere"},{"key":"10.1016\/j.envpol.2025.126793_bib51","doi-asserted-by":"crossref","first-page":"7433","DOI":"10.3390\/molecules28217433","article-title":"Nocardioides: \u201cSpecialists\u201d for hard-to-degrade pollutants in the environment","volume":"28","author":"Ma","year":"2023","journal-title":"Molecules"},{"key":"10.1016\/j.envpol.2025.126793_bib52","doi-asserted-by":"crossref","first-page":"3072","DOI":"10.3389\/fmicb.2018.03072","article-title":"Insights on Mycobacterium leprae efflux pumps and their implications in drug resistance and virulence","volume":"9","author":"Machado","year":"2018","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.envpol.2025.126793_bib53","doi-asserted-by":"crossref","DOI":"10.1016\/j.marpolbul.2023.115837","article-title":"Toxigenic Escherichia coli with high antibiotic resistance index recovered from sands of recreational beaches of Mumbai, India","volume":"198","author":"Maloo","year":"2024","journal-title":"Mar. Poll. Bull."},{"key":"10.1016\/j.envpol.2025.126793_bib54","doi-asserted-by":"crossref","first-page":"691","DOI":"10.3390\/md20110691","article-title":"Marine macrolides to tackle antimicrobial resistance of Mycobacterium tuberculosis","volume":"20","author":"Mamada","year":"2022","journal-title":"Mar. Drugs"},{"key":"10.1016\/j.envpol.2025.126793_bib55","doi-asserted-by":"crossref","first-page":"328","DOI":"10.3390\/antibiotics12020328","article-title":"Horizontal gene transfer of antibiotic resistance genes in biofilms","volume":"12","author":"Michaelis","year":"2023","journal-title":"Antibiotics"},{"key":"10.1016\/j.envpol.2025.126793_bib56","doi-asserted-by":"crossref","first-page":"2647","DOI":"10.1080\/17441692.2021.2003839","article-title":"Community engagement: the key to tackling antimicrobial resistance (AMR) across a one health context?","volume":"17","author":"Mitchell","year":"2022","journal-title":"Glob. Public Health"},{"key":"10.1016\/j.envpol.2025.126793_bib57","series-title":"Antimicrobial Resistance","first-page":"101","article-title":"Polluted coastal and estuarine environments: a potential reservoir for AMR determinants in various pathogenic bacteria","author":"Mohamed Hatha","year":"2020"},{"key":"10.1016\/j.envpol.2025.126793_bib58","first-page":"1615","article-title":"Origin of antibiotics and antibiotic resistance and their impacts on drug development: a narrative review","volume":"16","author":"Muteeb","year":"2023","journal-title":"Pharm. Times"},{"key":"10.1016\/j.envpol.2025.126793_bib59","doi-asserted-by":"crossref","first-page":"8034","DOI":"10.3390\/ijerph17218034","article-title":"Antibiotic resistance in recreational waters: state of the science","volume":"17","author":"Nappier","year":"2020","journal-title":"IJERPH"},{"key":"10.1016\/j.envpol.2025.126793_bib60","doi-asserted-by":"crossref","first-page":"700","DOI":"10.3390\/microorganisms10040700","article-title":"IntegronFinder 2.0: identification and analysis of integrons across bacteria, with a focus on antibiotic resistance in Klebsiella","volume":"10","author":"N\u00e9ron","year":"2022","journal-title":"Microorganisms"},{"key":"10.1016\/j.envpol.2025.126793_bib61","doi-asserted-by":"crossref","first-page":"787","DOI":"10.3390\/antibiotics10070787","article-title":"Metagenomics and other omics approaches to bacterial communities and antimicrobial resistance assessment in aquacultures","volume":"10","author":"Nogueira","year":"2021","journal-title":"Antibiotics"},{"key":"10.1016\/j.envpol.2025.126793_bib62","doi-asserted-by":"crossref","DOI":"10.1016\/j.envint.2023.108118","article-title":"Vertical changes in water depth and environmental variables drove the antibiotics and antibiotic resistomes distribution and microbial food web structures in the estuary and marine ecosystems","volume":"178","author":"Ohore","year":"2023","journal-title":"Environ. Int."},{"key":"10.1016\/j.envpol.2025.126793_bib63","doi-asserted-by":"crossref","first-page":"D206","DOI":"10.1093\/nar\/gkt1226","article-title":"The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST)","volume":"42","author":"Overbeek","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.envpol.2025.126793_bib64","series-title":"The Arabian Seas: Biodiversity, Environmental Challenges and Conservation Measures","first-page":"883","article-title":"The fisheries of the Arabian Sea large marine ecosystem","author":"Palomares","year":"2021"},{"key":"10.1016\/j.envpol.2025.126793_bib65","doi-asserted-by":"crossref","DOI":"10.1016\/j.csr.2022.104876","article-title":"Bacterial dynamics along the west coast of India during the non-monsoon and monsoon season","volume":"251","author":"Parab","year":"2022","journal-title":"Cont. Shelf Res."},{"key":"10.1016\/j.envpol.2025.126793_bib66","doi-asserted-by":"crossref","DOI":"10.1016\/j.marenvres.2024.106616","article-title":"Insights into the seasonal changes in the taxonomic and functional diversity of bacteria in the eastern Arabian Sea: shotgun metagenomics approach","volume":"199","author":"Parab","year":"2024","journal-title":"Mar. Environ. Res."},{"key":"10.1016\/j.envpol.2025.126793_bib67","doi-asserted-by":"crossref","DOI":"10.3389\/fsufs.2023.1078314","article-title":"Sustainable intensification of small-scale mariculture systems: farm-level insights from the coastal regions of India","volume":"7","author":"Parappurathu","year":"2023","journal-title":"Front. Sustain. Food Syst."},{"key":"10.1016\/j.envpol.2025.126793_bib68","doi-asserted-by":"crossref","first-page":"1043","DOI":"10.1101\/gr.186072.114","article-title":"CheckM: assessing the quality of microbial genomes recovered from isolates, single cells and metagenomes","volume":"25","author":"Parks","year":"2015","journal-title":"Genome Res."},{"key":"10.1016\/j.envpol.2025.126793_bib69","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/j.jgar.2021.08.001","article-title":"Environmental antimicrobial resistance and its drivers: a potential threat to public health","volume":"27","author":"Samreen","year":"2021","journal-title":"J. Glob. Antimicrob. Resist."},{"key":"10.1016\/j.envpol.2025.126793_bib70","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1007\/s10661-020-08368-1","article-title":"Prevalence of indicator and potential pathogenic bacterial groups in the Chapora bay-estuarine system, Goa, central west coast of India","volume":"192","author":"Sangodkar","year":"2020","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.envpol.2025.126793_bib71","doi-asserted-by":"crossref","first-page":"8883","DOI":"10.1093\/nar\/gkaa621","article-title":"DRAM for distilling microbial metabolism to automate the curation of microbiome function","volume":"48","author":"Shaffer","year":"2020","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.envpol.2025.126793_bib72","series-title":"Handbook on Antimicrobial Resistance","first-page":"1","article-title":"Antimicrobial resistance in marine ecosystem: an emerging threat for public health","author":"Sharma","year":"2023"},{"key":"10.1016\/j.envpol.2025.126793_bib73","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1007\/s10661-020-08783-4","article-title":"Sea foam-associated pathogenic bacteria along the west coast of India","volume":"193","author":"Shetye","year":"2021","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.envpol.2025.126793_bib74","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1016\/j.envres.2008.11.011","article-title":"Factors controlling physico-chemical characteristics in the coastal waters off Mangalore\u2014A multivariate approach","volume":"109","author":"Shirodkar","year":"2009","journal-title":"Environ. Res."},{"key":"10.1016\/j.envpol.2025.126793_bib75","doi-asserted-by":"crossref","first-page":"836","DOI":"10.1038\/s41564-018-0171-1","article-title":"Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy","volume":"3","author":"Sieber","year":"2018","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.envpol.2025.126793_bib76","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.2478\/aoas-2021-0077","article-title":"Increased incidence and antimicrobial resistance among Vibrio parahaemolyticus in shellfishes from major fish markets in Cochin, South India: seafood risk assessment","volume":"22","author":"Silvester","year":"2022","journal-title":"Ann. Anim. Sci."},{"key":"10.1016\/j.envpol.2025.126793_bib77","doi-asserted-by":"crossref","first-page":"3210","DOI":"10.1093\/bioinformatics\/btv351","article-title":"BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs","volume":"31","author":"Sim\u00e3o","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.envpol.2025.126793_bib78","doi-asserted-by":"crossref","DOI":"10.3389\/fenvs.2022.830861","article-title":"Antimicrobials and antibiotic resistance genes in water bodies: pollution, risk and control","volume":"10","author":"Singh","year":"2022","journal-title":"Front. Environ. Sci."},{"key":"10.1016\/j.envpol.2025.126793_bib79","doi-asserted-by":"crossref","DOI":"10.1016\/j.envint.2022.107714","article-title":"Industrial effluents boosted antibiotic resistome risk in coastal environments","volume":"171","author":"Su","year":"2023","journal-title":"Environ. Int."},{"key":"10.1016\/j.envpol.2025.126793_bib80","doi-asserted-by":"crossref","first-page":"12204","DOI":"10.1039\/D2RA07448F","article-title":"Long-term impacts of climate change on coastal and transitional eco-systems in India: an overview of its current status, future projections, solutions and policies","volume":"13","author":"Subramanian","year":"2023","journal-title":"RSC Adv."},{"key":"10.1016\/j.envpol.2025.126793_bib81","doi-asserted-by":"crossref","DOI":"10.1002\/pmic.202100409","article-title":"Proteomics in antibiotic resistance and tolerance research: mapping the resistome and the tolerome of bacterial pathogens","volume":"22","author":"Sulaiman","year":"2022","journal-title":"Proteomics"},{"key":"10.1016\/j.envpol.2025.126793_bib82","doi-asserted-by":"crossref","DOI":"10.1111\/1751-7915.14408","article-title":"Microbial evolution through horizontal gene transfer by mobile genetic elements","volume":"17","author":"Tokuda","year":"2024","journal-title":"Microb. Biotechnol."},{"key":"10.1016\/j.envpol.2025.126793_bib83","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1007\/s10661-021-09679-7","article-title":"Seasonal variations in the water quality and antibiotic resistance of microbial pollution indicators in the Mandovi and Zuari estuaries, Goa, India","volume":"194","author":"Toraskar","year":"2022","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.envpol.2025.126793_bib101","series-title":"Protocols for the Joint Global Ocean Flux Study (JGOFS), 29. Core Measurements","first-page":"170","year":"1994"},{"key":"10.1016\/j.envpol.2025.126793_bib84","doi-asserted-by":"crossref","first-page":"28383","DOI":"10.1007\/s11356-023-25195-2","article-title":"Bacterial diversity in the aquatic system in India based on metagenome analysis\u2014a critical review","volume":"30","author":"Vijayan","year":"2023","journal-title":"Environ. Sci. Pollut. Res."},{"key":"10.1016\/j.envpol.2025.126793_bib85","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2016.00173","article-title":"Dissemination of antimicrobial resistance in microbial ecosystems through horizontal gene transfer","volume":"7","author":"Von Wintersdorff","year":"2016","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.envpol.2025.126793_bib86","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2023.121238","article-title":"The role and mechanism of quorum sensing on environmental antimicrobial resistance","volume":"322","author":"Wang","year":"2023","journal-title":"Environ. Poll."},{"key":"10.1016\/j.envpol.2025.126793_bib87","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2021.118541","article-title":"Antibiotics in mariculture systems: a review of occurrence, environmental behavior and ecological effects","volume":"293","author":"Wang","year":"2022","journal-title":"Environ. Poll."},{"key":"10.1016\/j.envpol.2025.126793_bib88","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2022.119456","article-title":"Rainfall leads to elevated levels of antibiotic resistance genes within seawater at an Australian beach","volume":"307","author":"Williams","year":"2022","journal-title":"Environ. Poll."},{"key":"10.1016\/j.envpol.2025.126793_bib89","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1093\/bioinformatics\/btv638","article-title":"MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets","volume":"32","author":"Wu","year":"2016","journal-title":"Bioinformatics"},{"key":"10.1016\/j.envpol.2025.126793_bib90","doi-asserted-by":"crossref","first-page":"3340","DOI":"10.1093\/bioinformatics\/btx433","article-title":"ISEScan: automated identification of insertion sequence elements in prokaryotic genomes","volume":"33","author":"Xie","year":"2017","journal-title":"Bioinformatics"},{"key":"10.1016\/j.envpol.2025.126793_bib91","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2023.120488","article-title":"A global atlas of marine antibiotic resistance genes and their expression","volume":"244","author":"Xu","year":"2023","journal-title":"Water Res."},{"key":"10.1016\/j.envpol.2025.126793_bib93","doi-asserted-by":"crossref","first-page":"15136","DOI":"10.1021\/acs.est.1c03444","article-title":"Evidence for long-term anthropogenic pollution: the hadal trench as a depository and indicator for dissemination of antibiotic resistance genes","volume":"55","author":"Yang","year":"2021","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.envpol.2025.126793_bib94","doi-asserted-by":"crossref","first-page":"2640","DOI":"10.1093\/jac\/dks261","article-title":"Identification of acquired antimicrobial resistance genes","volume":"67","author":"Zankari","year":"2012","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.envpol.2025.126793_bib95","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2025.125695","article-title":"Antibiotic resistance genes in the coastal atmosphere under varied weather conditions: distribution, influencing factors and transmission mechanisms","volume":"368","author":"Zhang","year":"2025","journal-title":"Environ. Poll."},{"key":"10.1016\/j.envpol.2025.126793_bib96","doi-asserted-by":"crossref","first-page":"17","DOI":"10.3390\/md23010017","article-title":"Deep-sea ecosystems as an unexpected source of antibiotic resistance genes","volume":"23","author":"Zhang","year":"2024","journal-title":"Mar. Drugs"},{"key":"10.1016\/j.envpol.2025.126793_bib97","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.146009","article-title":"A systematic review of antibiotics and antibiotic resistance genes in estuarine and coastal environments","volume":"777","author":"Zheng","year":"2021","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.envpol.2025.126793_bib98","doi-asserted-by":"crossref","first-page":"4238","DOI":"10.1038\/s41467-024-48591-9","article-title":"Shaping of microbial phenotypes by trade-offs","volume":"15","author":"Zhu","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.envpol.2025.126793_bib99","doi-asserted-by":"crossref","first-page":"1099","DOI":"10.1126\/science.aao3007","article-title":"Microbial mass movements","volume":"357","author":"Zhu","year":"2017","journal-title":"Science"},{"key":"10.1016\/j.envpol.2025.126793_bib100","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2021.117402","article-title":"Distribution of antibiotic resistance genes in the environment","volume":"285","author":"Zhuang","year":"2021","journal-title":"Environ. Poll."}],"container-title":["Environmental Pollution"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0269749125011662?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0269749125011662?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,2,18]],"date-time":"2026-02-18T07:43:03Z","timestamp":1771400583000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0269749125011662"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,10]]},"references-count":100,"alternative-id":["S0269749125011662"],"URL":"https:\/\/doi.org\/10.1016\/j.envpol.2025.126793","relation":{},"ISSN":["0269-7491"],"issn-type":[{"value":"0269-7491","type":"print"}],"subject":[],"published":{"date-parts":[[2025,10]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Antibiotic-resistant bacteria in marine productive zones of the eastern Arabian Sea: Implications for human and environmental health","name":"articletitle","label":"Article Title"},{"value":"Environmental Pollution","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.envpol.2025.126793","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"126793"}}