{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T14:03:16Z","timestamp":1790863396009,"version":"4.1.0"},"reference-count":155,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","award":["2024T170699"],"award-info":[{"award-number":["2024T170699"]}],"id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["52300012"],"award-info":[{"award-number":["52300012"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Environmental Research"],"published-print":{"date-parts":[[2026,11]]},"DOI":"10.1016\/j.envres.2026.125669","type":"journal-article","created":{"date-parts":[[2026,9,12]],"date-time":"2026-09-12T15:04:33Z","timestamp":1789225473000},"page":"125669","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"P2","title":["Multidimensional research progress on microbial resistance mechanisms and ecological bioremediation strategies under acid mine drainage stress"],"prefix":"10.1016","volume":"308","author":[{"given":"Zhuang","family":"Ma","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lihong","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sen","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuhang","family":"Su","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuai","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zeze","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tongtong","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Honghong","family":"Guo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"Suppl. 1","key":"10.1016\/j.envres.2026.125669_bib1","first-page":"5","article-title":"Metagenomics, metatranscriptomics, and metabolomics approaches for microbiome analysis","volume":"12","author":"Aguiar-Pulido","year":"2016","journal-title":"Evol. Bioinform."},{"key":"10.1016\/j.envres.2026.125669_bib2","doi-asserted-by":"crossref","first-page":"1445","DOI":"10.3389\/fmicb.2018.01445","article-title":"Microbial community shifts in response to acid mine drainage pollution within a natural wetland ecosystem","volume":"9","author":"Aguinaga","year":"2018","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib4","doi-asserted-by":"crossref","first-page":"41","DOI":"10.3390\/microorganisms8010041","article-title":"Recovery of metals from acid mine drainage by bioelectrochemical system inoculated with a novel exoelectrogen, Pseudomonas sp. E8","volume":"8","author":"Ai","year":"2020","journal-title":"Microorganisms"},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib3","doi-asserted-by":"crossref","first-page":"443","DOI":"10.3390\/min10050443","article-title":"Effective treatment of acid mine drainage with microbial fuel cells: an emphasis on typical energy substrates","volume":"10","author":"Ai","year":"2020","journal-title":"Minerals"},{"issue":"12","key":"10.1016\/j.envres.2026.125669_bib5","doi-asserted-by":"crossref","first-page":"1139","DOI":"10.1016\/j.jclepro.2004.09.006","article-title":"Acid mine drainage (AMD): causes, treatment and case studies","volume":"14","author":"Akcil","year":"2006","journal-title":"J. Clean. Prod."},{"issue":"2\u20133","key":"10.1016\/j.envres.2026.125669_bib6","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1016\/S0168-6445(03)00055-X","article-title":"Bacterial iron homeostasis","volume":"27","author":"Andrews","year":"2003","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.envres.2026.125669_bib7","series-title":"Mechanisms of Copper Homeostasis in Bacteria","first-page":"3","author":"Arguello","year":"2013"},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib8","doi-asserted-by":"crossref","DOI":"10.1063\/5.0076635","article-title":"Principles for the design of multicellular engineered living systems","volume":"6","author":"Aydin","year":"2022","journal-title":"APL Bioeng."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib9","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1016\/S0168-6445(03)00046-9","article-title":"Bacterial mercury resistance from atoms to ecosystems","volume":"27","author":"Barkay","year":"2003","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.envres.2026.125669_bib10","article-title":"The radiophiles of Deinococcaceae family: resourceful microbes for innovative biotechnological applications","volume":"3","author":"Basu","year":"2022","journal-title":"Curr. Res. Microb. Sci."},{"key":"10.1016\/j.envres.2026.125669_bib11","doi-asserted-by":"crossref","DOI":"10.35208\/ert.1405067","article-title":"The treatment of acid mine drainage using a combination of selective precipitation and bio-sorption techniques: a hybrid and step-wise approach for AMD valorization and environmental pollution control","volume":"7","author":"Beauclair","year":"2024","journal-title":"Environ. Res. Technol."},{"key":"10.1016\/j.envres.2026.125669_bib12","doi-asserted-by":"crossref","first-page":"592","DOI":"10.3389\/fmicb.2019.00592","article-title":"Proteomics reveal enhanced oxidative stress responses and metabolic adaptation in Acidithiobacillus ferrooxidans biofilm cells on pyrite","volume":"10","author":"Bellenberg","year":"2019","journal-title":"Front. Microbiol."},{"issue":"11","key":"10.1016\/j.envres.2026.125669_bib13","doi-asserted-by":"crossref","first-page":"1735","DOI":"10.1038\/ismej.2011.51","article-title":"Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics","volume":"5","author":"Bertin","year":"2011","journal-title":"ISME J."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib14","first-page":"139","article-title":"Enhancement of bacterial iron and sulfate respiration for in situ bioremediation of acid mine drainage sites: a case study","volume":"24","author":"Bilgin","year":"2007","journal-title":"Min. Metall. Explor."},{"key":"10.1016\/j.envres.2026.125669_bib15","doi-asserted-by":"crossref","DOI":"10.1016\/j.polar.2021.100745","article-title":"Mercuric reductase gene (merA) activity in a mercury tolerant sulphate reducing bacterium isolated from the Kongsfjorden, Arctic","volume":"30","author":"Binish","year":"2021","journal-title":"Polar Sci."},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib16","first-page":"1302","article-title":"Metal pollution and mining in the Iberian pyrite belt: new remediation technologies to improve the ecosystem services of the river basins","volume":"15","author":"Bonnail","year":"2023"},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib17","doi-asserted-by":"crossref","first-page":"1597","DOI":"10.1111\/j.1462-2920.2011.02626.x","article-title":"Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments","volume":"14","author":"Bonnefoy","year":"2012","journal-title":"Environ. Microbiol."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib18","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1006\/eesa.1999.1860","article-title":"Microbial resistance to metals in the environment","volume":"45","author":"Bruins","year":"2000","journal-title":"Ecotoxicol. Environ. Saf."},{"key":"10.1016\/j.envres.2026.125669_bib19","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2022.117148","article-title":"Effects of organic substrates on sulfate-reducing microcosms treating acid mine drainage: performance dynamics and microbial community comparison","volume":"330","author":"Chai","year":"2023","journal-title":"J. Environ. Manag."},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib20","doi-asserted-by":"crossref","first-page":"338","DOI":"10.1038\/nrmicro.2017.15","article-title":"Metal homeostasis and resistance in bacteria","volume":"15","author":"Chandrangsu","year":"2017","journal-title":"Nat. Rev. Microbiol."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib21","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1007\/s10653-024-01858-y","article-title":"Identifying sources of acid mine drainage and major hydrogeochemical processes in abandoned mine adits (Southeast Shaanxi, China)","volume":"46","author":"Chang","year":"2024","journal-title":"Environ. Geochem. Health"},{"issue":"38","key":"10.1016\/j.envres.2026.125669_bib22","doi-asserted-by":"crossref","first-page":"53936","DOI":"10.1007\/s11356-021-14566-2","article-title":"Effects of long-term discharge of acid mine drainage from abandoned coal mines on soil microorganisms: microbial community structure, interaction patterns, and metabolic functions","volume":"28","author":"Chen","year":"2021","journal-title":"Environ. Sci. Pollut. Control Ser."},{"key":"10.1016\/j.envres.2026.125669_bib23","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.131498","article-title":"The interplay between microalgae and toxic metal(loid)s: mechanisms and implications in AMD phycoremediation coupled with Fe\/Mn mineralization","volume":"454","author":"Chen","year":"2023","journal-title":"J. Hazard. Mater."},{"issue":"18","key":"10.1016\/j.envres.2026.125669_bib24","first-page":"4497","article-title":"Dynamic adsorption of Mn2+ from acid mine drainage by highly active immobilized particles with Fe0\/Fe2+ enhanced SRB","volume":"29","author":"Chen","year":"2024"},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib25","doi-asserted-by":"crossref","first-page":"1579","DOI":"10.1038\/ismej.2014.245","article-title":"Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage","volume":"9","author":"Chen","year":"2015","journal-title":"ISME J."},{"key":"10.1016\/j.envres.2026.125669_bib26","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1016\/j.copbio.2016.01.013","article-title":"Microbial communities, processes and functions in acid mine drainage ecosystems","volume":"38","author":"Chen","year":"2016","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/j.envres.2026.125669_bib27","doi-asserted-by":"crossref","DOI":"10.1016\/j.jclepro.2022.135371","article-title":"Evaluating the occurrence frequency of horizontal gene transfer induced by different degrees of heavy metal stress","volume":"382","author":"Chen","year":"2023","journal-title":"J. Clean. Prod."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib28","doi-asserted-by":"crossref","first-page":"919","DOI":"10.1111\/1462-2920.15501","article-title":"Indicator species drive the key ecological functions of microbiota in a river impacted by acid mine drainage generated by rare earth elements mining in South China","volume":"24","author":"Chen","year":"2022","journal-title":"Environ. Microbiol."},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib29","doi-asserted-by":"crossref","first-page":"1837","DOI":"10.1007\/s12010-012-0047-4","article-title":"Characterization of a heavy metal translocating P-type ATPase gene from an environmental heavy metal resistance Enterobacter sp. isolate","volume":"169","author":"Chien","year":"2013","journal-title":"Appl. Biochem. Biotechnol."},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib30","doi-asserted-by":"crossref","first-page":"329","DOI":"10.1007\/s00203-024-04058-5","article-title":"From freezing to functioning: cellular strategies of cold-adapted bacteria for surviving in extreme environments","volume":"206","author":"Choudhary","year":"2024","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.envres.2026.125669_bib31","doi-asserted-by":"crossref","DOI":"10.1016\/j.cej.2024.153836","article-title":"High acidity notably influences acid mine drainage treatment performance in constructed wetlands packed with composite organic substrates by affecting both abiotic and biotic routes","volume":"496","author":"Cun","year":"2024","journal-title":"Chem. Eng. J."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib32","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1007\/s42398-020-00112-2","article-title":"Microbes as a boon for the bane of heavy metals","volume":"3","author":"Dave","year":"2020","journal-title":"Environ. Sustain."},{"key":"10.1016\/j.envres.2026.125669_bib33","doi-asserted-by":"crossref","DOI":"10.1016\/j.biortech.2025.132317","article-title":"Biochar mediated differential regulation of oxidative stress and energy supply in Bacillus subtilis and Rhizoctonia solani","volume":"426","author":"Deng","year":"2025","journal-title":"Bioresour. Technol."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib34","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1007\/s10661-024-13516-y","article-title":"Harnessing microbes for heavy metal remediation: mechanisms and prospects","volume":"197","author":"Deo","year":"2024","journal-title":"Environ. Monit. Assess."},{"key":"10.1016\/j.envres.2026.125669_bib35","doi-asserted-by":"crossref","DOI":"10.1016\/j.jwpe.2023.103537","article-title":"Application of microbial sulfate-reduction process for sulfate-laden wastewater treatment: a review","volume":"52","author":"Diao","year":"2023","journal-title":"J. Water Process Eng."},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib36","doi-asserted-by":"crossref","first-page":"4046","DOI":"10.1021\/acsomega.2c06931","article-title":"Study on growth influencing factors and desulfurization performance of sulfate reducing bacteria based on the response surface methodology","volume":"8","author":"Dong","year":"2023","journal-title":"ACS Omega"},{"issue":"19","key":"10.1016\/j.envres.2026.125669_bib37","doi-asserted-by":"crossref","first-page":"8133","DOI":"10.1007\/s00253-014-5982-2","article-title":"Metal resistance in acidophilic microorganisms and its significance for biotechnologies","volume":"98","author":"Dopson","year":"2014","journal-title":"Appl. Microbiol. Biotechnol."},{"issue":"12","key":"10.1016\/j.envres.2026.125669_bib38","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1007\/s11306-017-1298-4","article-title":"Evaluation of quenching and extraction procedures for performing metabolomics in Acidithiobacillus ferrooxidans","volume":"13","author":"Doran","year":"2017","journal-title":"Metabolomics"},{"key":"10.1016\/j.envres.2026.125669_bib39","doi-asserted-by":"crossref","DOI":"10.1016\/j.biortech.2019.121469","article-title":"Insight into the potentiality of big biochar particle as an amendment in aerobic composting of sewage sludge","volume":"288","author":"Du","year":"2019","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.envres.2026.125669_bib40","doi-asserted-by":"crossref","DOI":"10.1016\/j.etap.2023.104081","article-title":"Effects of co-selection of antibiotic-resistance and metal-resistance genes on antibiotic-resistance potency of environmental bacteria and related ecological risk factors","volume":"98","author":"Engin","year":"2023","journal-title":"Environ. Toxicol. Pharmacol."},{"key":"10.1016\/j.envres.2026.125669_bib41","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1016\/j.freeradbiomed.2017.10.061","article-title":"48 - lipid radicals cause light induced-retinal degeneration","volume":"112","author":"Enoki","year":"2017","journal-title":"Free Radic. Biol. Med."},{"key":"10.1016\/j.envres.2026.125669_bib42","doi-asserted-by":"crossref","DOI":"10.1016\/j.envres.2021.111341","article-title":"The adaptation mechanisms of Acidithiobacillus caldus CCTCC M 2018054 to extreme acid stress: bioleaching performance, physiology, and transcriptomics","volume":"199","author":"Feng","year":"2021","journal-title":"Environ. Res."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib43","doi-asserted-by":"crossref","DOI":"10.1038\/srep43703","article-title":"Quantifying Fenton reaction pathways driven by self-generated H2O2 on pyrite surfaces","volume":"7","author":"Gil-Lozano","year":"2017","journal-title":"Sci. Rep."},{"issue":"10","key":"10.1016\/j.envres.2026.125669_bib44","doi-asserted-by":"crossref","first-page":"1389","DOI":"10.1016\/S0038-0717(97)00270-8","article-title":"Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review","volume":"30","author":"Giller","year":"1998","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.envres.2026.125669_bib45","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2024.121423","article-title":"A novel sulfidogenic process via sulfur reduction to remove arsenate in acid mine drainage: insights into the performance and microbial mechanisms","volume":"254","author":"Gou","year":"2024","journal-title":"Water Res."},{"issue":"10","key":"10.1016\/j.envres.2026.125669_bib46","first-page":"5106","article-title":"Recent advances in constructed wetland-microbial fuel cells for simultaneous bioelectricity production and wastewater treatment","volume":"43","author":"Guadarrama-P\u00e9rez","year":"2019","journal-title":"A Review"},{"key":"10.1016\/j.envres.2026.125669_bib47","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2021.117628","article-title":"pH-dependent biological sulfidogenic processes for metal-laden wastewater treatment: sulfate reduction or sulfur reduction?","volume":"204","author":"Guo","year":"2021","journal-title":"Water Res."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib48","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0261823","article-title":"Experimental study of the remediation of acid mine drainage by Maifan stones combined with SRB","volume":"17","author":"Guo","year":"2022","journal-title":"PLoS One"},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib49","doi-asserted-by":"crossref","first-page":"2019","DOI":"10.1128\/AEM.03400-12","article-title":"RubisCO gene clusters found in a metagenome microarray from acid mine drainage","volume":"79","author":"Guo","year":"2013","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.envres.2026.125669_bib50","doi-asserted-by":"crossref","first-page":"2882","DOI":"10.3389\/fmicb.2018.02882","article-title":"Low-abundance members of the Firmicutes facilitate bioremediation of soil impacted by highly acidic mine drainage from the malanjkhand copper project, India","volume":"9","author":"Gupta","year":"2018","journal-title":"Front. Microbiol."},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib51","first-page":"464","article-title":"Characterization and application of an anaerobic, iron and sulfate reducing bacterial culture in enhanced bioremediation of acid mine drainage impacted soil","volume":"55","author":"Gupta","year":"2020","journal-title":"J. Environ. Sci. Health - Part A Toxic\/Hazard. Subst. Environ. Eng."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib52","article-title":"Lateral gene transfer in a heavy metal-contaminated-groundwater microbial community","volume":"7","author":"Hemme Christopher","year":"2016","journal-title":"mBio"},{"key":"10.1016\/j.envres.2026.125669_bib53","doi-asserted-by":"crossref","DOI":"10.1016\/j.agee.2023.108462","article-title":"Metagenomic strategies uncover the soil bioavailable phosphorus improved by organic fertilization in Mollisols","volume":"349","author":"Hu","year":"2023","journal-title":"Agric. Ecosyst. Environ."},{"key":"10.1016\/j.envres.2026.125669_bib54","article-title":"Continuous and effective treatment of heavy metal in acid mine drainage based on reducing barrier system: a case study in North China","volume":"8","author":"Hu","year":"2022","journal-title":"J. Hazard. Mater. Adv."},{"key":"10.1016\/j.envres.2026.125669_bib55","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.133284","article-title":"Different survival strategies of the phosphate-mineralizing bacterium Enterobacter sp. PMB-5 in response to cadmium stress: biomineralization, biosorption, and bioaccumulation","volume":"465","author":"Huang","year":"2024","journal-title":"J. Hazard. Mater."},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib56","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1016\/j.tim.2016.03.004","article-title":"Microbial ecology and evolution in the acid mine drainage model system","volume":"24","author":"Huang","year":"2016","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.envres.2026.125669_bib57","article-title":"Metagenomic analysis reveals resistome characteristics of acidic, Multimetal(Loid) enriched coal source mine drainage environment under heavy Metal(Loid)S-Induced Co-Selection","author":"Huang","year":"2022","journal-title":"SSRN Electron. J."},{"key":"10.1016\/j.envres.2026.125669_bib58","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.130898","article-title":"Metagenomic analysis characterizes resistomes of an acidic, multimetal(loid)-enriched coal source mine drainage treatment system","volume":"448","author":"Huang","year":"2023","journal-title":"J. Hazard. Mater."},{"key":"10.1016\/j.envres.2026.125669_bib59","doi-asserted-by":"crossref","DOI":"10.1016\/j.jclepro.2021.126951","article-title":"Role of electrode materials on performance and microbial characteristics in the constructed wetland coupled microbial fuel cell (CW-MFC): a review","volume":"301","author":"Huang","year":"2021","journal-title":"J. Clean. Prod."},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib60","doi-asserted-by":"crossref","first-page":"2655","DOI":"10.1007\/s13762-020-02669-1","article-title":"Sulfobacillus thermosulfidooxidans: an acidophile isolated from acid hot spring for the biosorption of heavy metal ions","volume":"17","author":"Huang","year":"2020","journal-title":"Int. J. Environ. Sci. Technol."},{"key":"10.1016\/j.envres.2026.125669_bib61","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.761579","article-title":"Key factors governing microbial community in extremely acidic mine drainage (pH <3)","volume":"12","author":"Huang","year":"2021","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib62","first-page":"399","article-title":"[Characteristics of Nitrogen Cycle-related Bacterial Community and Its Response to Soil in the Main Lead-zinc Mine Reclamation Area of Lanping]","volume":"46","author":"Huang","year":"2025","journal-title":"Huan jing ke xue= Huanjing kexue"},{"key":"10.1016\/j.envres.2026.125669_bib63","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1146\/annurev-micro-091014-104322","article-title":"Transcription factors that defend bacteria against reactive oxygen species","volume":"69","author":"Imlay","year":"2015","journal-title":"Annu. Rev. Microbiol."},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib64","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1007\/s12257-014-0324-x","article-title":"PCR-DGGE and real-time PCR dsrB-based study of the impact of heavy metals on the diversity and abundance of sulfate-reducing bacteria","volume":"19","author":"Islamud","year":"2014","journal-title":"Biotechnol. Bioproc. Eng."},{"issue":"12","key":"10.1016\/j.envres.2026.125669_bib65","doi-asserted-by":"crossref","first-page":"3820","DOI":"10.1002\/bit.27525","article-title":"Display of lead-binding proteins on Escherichia coli surface for lead bioremediation","volume":"117","author":"Jia","year":"2020","journal-title":"Biotechnol. Bioeng."},{"key":"10.1016\/j.envres.2026.125669_bib66","doi-asserted-by":"crossref","DOI":"10.1016\/j.psep.2025.107078","article-title":"Study on the joint treatment of acidic mine wastewater by sulfate reducing bacteria and sulfide oxidizing bacteria under different systems","volume":"198","author":"Jiang","year":"2025","journal-title":"Process Saf. Environ. Prot."},{"issue":"9","key":"10.1016\/j.envres.2026.125669_bib67","doi-asserted-by":"crossref","first-page":"2916","DOI":"10.1128\/AEM.02289-09","article-title":"Characterization of extracellular polymeric substances from acidophilic microbial biofilms","volume":"76","author":"Jiao","year":"2010","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.envres.2026.125669_bib68","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2020.123108","article-title":"A novel approach for treating acid mine drainage through forming schwertmannite driven by a mixed culture of Acidiphilium multivorum and Acidithiobacillus ferrooxidans prior to lime neutralization","volume":"400","author":"Jin","year":"2020","journal-title":"J. Hazard. Mater."},{"issue":"10","key":"10.1016\/j.envres.2026.125669_bib69","doi-asserted-by":"crossref","first-page":"2003","DOI":"10.1007\/s00449-015-1441-4","article-title":"Optimization of sulfide production by an indigenous consortium of sulfate-reducing bacteria for the treatment of lead-contaminated wastewater","volume":"38","author":"Kieu","year":"2015","journal-title":"Bioproc. Biosyst. Eng."},{"issue":"36","key":"10.1016\/j.envres.2026.125669_bib70","doi-asserted-by":"crossref","first-page":"27985","DOI":"10.1007\/s11356-017-0401-8","article-title":"A preliminary study to design a floating treatment wetland for remediating acid mine drainage-impacted water using vetiver grass (Chrysopogon zizanioides)","volume":"24","author":"Kiiskila","year":"2017","journal-title":"Environ. Sci. Pollut. Control Ser."},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib71","doi-asserted-by":"crossref","first-page":"1191","DOI":"10.1007\/s00216-017-0751-6","article-title":"Synthetic biology for microbial heavy metal biosensors","volume":"410","author":"Kim","year":"2018","journal-title":"Anal. Bioanal. Chem."},{"issue":"9\u201310","key":"10.1016\/j.envres.2026.125669_bib72","doi-asserted-by":"crossref","first-page":"1005","DOI":"10.1007\/s00439-024-02678-x","article-title":"Advances in long-read single-cell transcriptomics","volume":"143","author":"Kumari","year":"2024","journal-title":"Hum. Genet."},{"key":"10.1016\/j.envres.2026.125669_bib73","doi-asserted-by":"crossref","first-page":"764","DOI":"10.1016\/j.jhazmat.2016.09.060","article-title":"Complete removal of arsenic and zinc from a heavily contaminated acid mine drainage via an indigenous SRB consortium","volume":"321","author":"Le Pape","year":"2017","journal-title":"J. Hazard. Mater."},{"key":"10.1016\/j.envres.2026.125669_bib74","doi-asserted-by":"crossref","first-page":"139","DOI":"10.3389\/fmicb.2017.00139","article-title":"Simultaneous activation of Iron- and thiol-based sensor-regulator systems by redox-active compounds","volume":"8","author":"Lee","year":"2017","journal-title":"Front. Microbiol."},{"issue":"11","key":"10.1016\/j.envres.2026.125669_bib75","first-page":"536","article-title":"Acid water neutralization using microbial fuel cells: an alternative for acid mine drainage treatment","volume":"8","author":"Leiva","year":"2016"},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib76","doi-asserted-by":"crossref","first-page":"1413","DOI":"10.1039\/D2EW00947A","article-title":"Dynamic experiment on remediation of acid mine drainage by iron\u2013carbon microelectrolysis enhancing sulfate-reducing bacteria","volume":"9","author":"Li","year":"2023","journal-title":"Environ. Sci. Water Res. Technol."},{"key":"10.1016\/j.envres.2026.125669_bib77","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2024.120550","article-title":"Bioindicator responses to extreme conditions: insights into pH and bioavailable metals under acidic metal environments","volume":"356","author":"Li","year":"2024","journal-title":"J. Environ. Manag."},{"key":"10.1016\/j.envres.2026.125669_bib78","doi-asserted-by":"crossref","first-page":"38","DOI":"10.5004\/dwt.2022.28685","article-title":"Analysis of algal bloom species in eastern China and buoy-bead flotation used for treating microalgae","volume":"265","author":"Li","year":"2022","journal-title":"Desalination Water Treat."},{"issue":"52","key":"10.1016\/j.envres.2026.125669_bib79","doi-asserted-by":"crossref","first-page":"78862","DOI":"10.1007\/s11356-022-21329-0","article-title":"Construction and carbon source optimization of a microbial-plant coupled reactor for treating acid mine drainage","volume":"29","author":"Lin","year":"2022","journal-title":"Environ. Sci. Pollut. Control Ser."},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib80","doi-asserted-by":"crossref","first-page":"1741","DOI":"10.1007\/s10653-020-00759-0","article-title":"Impact factors of the accumulation, migration and spread of antibiotic resistance in the environment","volume":"43","author":"Lin","year":"2021","journal-title":"Environ. Geochem. Health"},{"key":"10.1016\/j.envres.2026.125669_bib81","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2022.115425","article-title":"Photooxidation of Fe(II) to schwertmannite promotes As(III) oxidation and immobilization on pyrite under acidic conditions","volume":"317","author":"Liu","year":"2022","journal-title":"J. Environ. Manag."},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib82","doi-asserted-by":"crossref","first-page":"3896","DOI":"10.1111\/1462-2920.15543","article-title":"Mobile genetic elements mediate the mixotrophic evolution of novel alicyclobacillus species for acid mine drainage adaptation","volume":"23","author":"Liu","year":"2021","journal-title":"Environ. Microbiol."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib83","doi-asserted-by":"crossref","first-page":"1639","DOI":"10.1093\/bib\/bbaa005","article-title":"Network analyses in microbiome based on high-throughput multi-omics data","volume":"22","author":"Liu","year":"2020","journal-title":"Briefings Bioinf."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib84","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1186\/s13068-020-01757-1","article-title":"Time-resolved multi-omics analysis reveals the role of nutrient stress-induced resource reallocation for TAG accumulation in oleaginous fungus Mortierella alpina","volume":"13","author":"Lu","year":"2020","journal-title":"Biotechnol. Biofuels"},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib85","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0266700","article-title":"Heavy metal pollution and environmental risks in the water of Rongna River caused by natural AMD around Tiegelongnan copper deposit, Northern Tibet, China","volume":"17","author":"Luo","year":"2022","journal-title":"PLoS One"},{"key":"10.1016\/j.envres.2026.125669_bib86","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.130774","article-title":"Genome-resolved metagenomics reveals depth-related patterns of microbial community structure and functions in a highly stratified, AMD overlaying mine tailings","volume":"447","author":"Luo","year":"2023","journal-title":"J. Hazard. Mater."},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib87","doi-asserted-by":"crossref","DOI":"10.1016\/j.jece.2024.113373","article-title":"A pilot-scale study on the in-situ remediation of acid mine drainage with supplemental of external nutrition: performance, heavy metal removal and microbial community evolution","volume":"12","author":"Ma","year":"2024","journal-title":"J. Environ. Chem. Eng."},{"key":"10.1016\/j.envres.2026.125669_bib88","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/j.biortech.2019.01.117","article-title":"Metatranscriptomics reveals microbial adaptation and resistance to extreme environment coupling with bioleaching performance","volume":"280","author":"Ma","year":"2019","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.envres.2026.125669_bib89","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2021.126102","article-title":"Threonine dehydratase enhances bacterial cadmium resistance via driving cysteine desulfuration and biomineralization of cadmium sulfide nanocrystals","volume":"417","author":"Ma","year":"2021","journal-title":"J. Hazard. Mater."},{"issue":"10","key":"10.1016\/j.envres.2026.125669_bib90","doi-asserted-by":"crossref","first-page":"4644","DOI":"10.1021\/cr900077w","article-title":"Coordination chemistry of bacterial metal transport and sensing","volume":"109","author":"Ma","year":"2009","journal-title":"Chem. Rev."},{"key":"10.1016\/j.envres.2026.125669_bib91","doi-asserted-by":"crossref","DOI":"10.1016\/j.jwpe.2020.101229","article-title":"Bioremediation of acid mine drainage using Fischer-Tropsch waste water as a feedstock for dissimilatory sulfate reduction","volume":"35","author":"Magowo","year":"2020","journal-title":"J. Water Process Eng."},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib92","doi-asserted-by":"crossref","first-page":"689","DOI":"10.1007\/s00792-013-0553-5","article-title":"Response of Acidithiobacillus caldus toward suboptimal pH conditions","volume":"17","author":"Mangold","year":"2013","journal-title":"Extremophiles"},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib93","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1007\/s11270-025-07916-0","article-title":"A systematic literature review of treatment approaches with sulfate-reducing bacteria for acid mine drainage","volume":"236","author":"Marques","year":"2025","journal-title":"Water Air Soil Pollut."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib94","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1111\/mmi.12860","article-title":"Nfu facilitates the maturation of iron-sulfur proteins and participates in virulence in Staphylococcus aureus","volume":"95","author":"Mashruwala","year":"2015","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.envres.2026.125669_bib95","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2020.115709","article-title":"Effect of heavy metal-induced stress on two extremophilic microbial communities from Caviahue-Copahue, Argentina","volume":"268","author":"Massello","year":"2021","journal-title":"Environ. Pollut."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib97","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/s40659-022-00373-7","article-title":"The OxyR and SoxR transcriptional regulators are involved in a broad oxidative stress response in Paraburkholderia xenovorans LB400","volume":"55","author":"M\u00e9ndez","year":"2022","journal-title":"Biol. Res."},{"key":"10.1016\/j.envres.2026.125669_bib96","volume":"vol. 6","author":"M\u00e9ndez-Garc\u00eda","year":"2015"},{"issue":"8","key":"10.1016\/j.envres.2026.125669_bib98","doi-asserted-by":"crossref","first-page":"709","DOI":"10.1016\/j.mineng.2011.03.012","article-title":"Tracking the prokaryotic diversity in acid mine drainage-contaminated environments: a review of molecular methods","volume":"24","author":"Mohapatra","year":"2011","journal-title":"Miner. Eng."},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib99","doi-asserted-by":"crossref","first-page":"1910","DOI":"10.1111\/1462-2920.12505","article-title":"Exploring the diversity of arsenic resistance genes from acid mine drainage microorganisms","volume":"17","author":"Morgante","year":"2015","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.envres.2026.125669_bib100","article-title":"Microbial community diversity dynamics in acid mine drainage and acid mine drainage-polluted soils","volume":"5","author":"Munyai","year":"2021","journal-title":"Implication Mining Water Irrig. Agric. Sustain."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib101","first-page":"477","article-title":"Jarosite versus Soluble Iron-Sulfate Formation and Their Role in Acid Mine Drainage Formation at the Pan de Az\u00facar Mine Tailings (Zn-Pb-Ag)","volume":"4","author":"Murray","year":"2014","journal-title":"NW Argentina"},{"key":"10.1016\/j.envres.2026.125669_bib102","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.ecoenv.2013.09.039","article-title":"Lead resistant bacteria: lead resistance mechanisms, their applications in lead bioremediation and biomonitoring","volume":"98","author":"Naik","year":"2013","journal-title":"Ecotoxicol. Environ. Saf."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib103","doi-asserted-by":"crossref","first-page":"34","DOI":"10.1111\/j.1751-7915.2011.00285.x","article-title":"Selective removal of transition metals from acidic mine waters by novel consortia of acidophilic sulfidogenic bacteria","volume":"5","author":"Nancucheo","year":"2012","journal-title":"Microb. Biotechnol."},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib104","doi-asserted-by":"crossref","first-page":"363","DOI":"10.4067\/S0716-97602013000400008","article-title":"Heavy metal resistance strategies of acidophilic bacteria and their acquisition: importance for biomining and bioremediation","volume":"46","author":"Navarro","year":"2013","journal-title":"Biol. Res."},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib105","doi-asserted-by":"crossref","first-page":"1005","DOI":"10.4014\/jmb.2001.01012","article-title":"Sulfate reduction for bioremediation of AMD facilitated by an Indigenous acidand metal-tolerant sulfate-reducer","volume":"30","author":"Nguyen","year":"2020","journal-title":"J. Microbiol. Biotechnol."},{"key":"10.1016\/j.envres.2026.125669_bib106","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2021.113868","article-title":"Developing a new approach for design support of subsurface constructed wetland using machine learning algorithms","volume":"301","author":"Nguyen","year":"2022","journal-title":"J. Environ. Manag."},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib107","doi-asserted-by":"crossref","first-page":"1329","DOI":"10.2134\/jeq2005.0325","article-title":"Microbial populations identified by fluorescence in situ hybridization in a constructed wetland treating acid coal mine drainage","volume":"35","author":"Nicomrat","year":"2006","journal-title":"J. Environ. Qual."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib108","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1016\/S0168-6445(03)00048-2","article-title":"Efflux-mediated heavy metal resistance in prokaryotes","volume":"27","author":"Nies","year":"2003","journal-title":"FEMS Microbiol. Rev."},{"issue":"23","key":"10.1016\/j.envres.2026.125669_bib109","doi-asserted-by":"crossref","first-page":"8781","DOI":"10.1021\/es803616k","article-title":"Microbial architecture of environmental sulfur processes: a novel syntrophic sulfur-metabolizing consortia","volume":"43","author":"Norlund","year":"2009","journal-title":"Environ. Sci. Technol."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib110","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1186\/1471-2180-8-203","article-title":"Microbial iron management mechanisms in extremely acidic environments: comparative genomics evidence for diversity and versatility","volume":"8","author":"Osorio","year":"2008","journal-title":"BMC Microbiol."},{"issue":"12","key":"10.1016\/j.envres.2026.125669_bib111","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms8122027","article-title":"Processing of metals and metalloids by actinobacteria: cell resistance mechanisms and synthesis of Metal(loid)-based nanostructures","volume":"8","author":"Presentato","year":"2020","journal-title":"Microorganisms"},{"key":"10.1016\/j.envres.2026.125669_bib112","doi-asserted-by":"crossref","first-page":"250","DOI":"10.1016\/j.sajb.2023.12.005","article-title":"Beyond contamination: enhancing plant tolerance to arsenic through phytobial remediation","volume":"164","author":"Rahman","year":"2024","journal-title":"South Afr. J. Bot."},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib113","doi-asserted-by":"crossref","first-page":"981","DOI":"10.1016\/j.cellsig.2012.01.008","article-title":"Reactive oxygen species (ROS) homeostasis and redox regulation in cellular signaling","volume":"24","author":"Ray","year":"2012","journal-title":"Cell. Signal."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib114","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1038\/ismej.2016.159","article-title":"Warming and nutrient enrichment in combination increase stochasticity and beta diversity of bacterioplankton assemblages across freshwater mesocosms","volume":"11","author":"Ren","year":"2017","journal-title":"ISME J."},{"key":"10.1016\/j.envres.2026.125669_bib115","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.137211","article-title":"Sustainable resolutions for environmental threat of the acid mine drainage","volume":"717","author":"Rezaie","year":"2020","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.envres.2026.125669_bib116","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1016\/j.jhazmat.2013.12.032","article-title":"Sulfate reduction at low pH to remediate acid mine drainage","volume":"269","author":"S\u00e1nchez-Andrea","year":"2014","journal-title":"J. Hazard. Mater."},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib117","first-page":"563","article-title":"Impacts of phosphorus and nitrogen absence on microbial diversity and sulfate removal in anaerobic batch reactors","volume":"58","author":"Santos","year":"2023","journal-title":"J. Environ. Sci. Health - Part A Toxic\/Hazard. Subst. Environ. Eng."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib118","doi-asserted-by":"crossref","first-page":"1804","DOI":"10.22214\/ijraset.2025.66660","article-title":"Enhancing microbial bioremediation: the role of CRISPR-Cas9 in? ?Environmental restoration","volume":"13","author":"Saxena","year":"2025","journal-title":"Int. J. Res. Appl. Sci. Eng. Technol."},{"key":"10.1016\/j.envres.2026.125669_bib119","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.131221","article-title":"Pollution caused by mining reshaped the structure and function of bacterial communities in China's largest ion-adsorption rare earth mine watershed","volume":"451","author":"Shu","year":"2023","journal-title":"J. Hazard. Mater."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib120","doi-asserted-by":"crossref","first-page":"1785","DOI":"10.1016\/j.jece.2014.07.021","article-title":"Acid mine drainage: challenges and opportunities","volume":"2","author":"Simate","year":"2014","journal-title":"J. Environ. Chem. Eng."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib121","doi-asserted-by":"crossref","DOI":"10.5751\/ES-14371-280310","article-title":"Eutrophication, water quality, and fisheries: a wicked management problem with insights from a century of change in Lake Erie","volume":"28","author":"Sinclair","year":"2023","journal-title":"Ecol. Soc."},{"key":"10.1016\/j.envres.2026.125669_bib122","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2020.122719","article-title":"Performance of organic substrate amended constructed wetland treating acid mine drainage (AMD) of North-Eastern India","volume":"397","author":"Singh","year":"2020","journal-title":"J. Hazard. Mater."},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib123","first-page":"1258","article-title":"Classification of mine drainages in Japan based on water quality: consideration for constructed wetland treatments","volume":"15","author":"Soda","year":"2023"},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib124","first-page":"281","article-title":"Advances in biological wastewater treatment processes: focus on low-carbon energy and resource recovery in biorefinery context","volume":"11","author":"Sravan","year":"2024"},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib125","doi-asserted-by":"crossref","first-page":"486","DOI":"10.1016\/j.jmb.2011.12.046","article-title":"Glutathione biosynthesis in bacteria by bifunctional GshF is driven by a modular structure featuring a novel hybrid ATP-Grasp fold","volume":"416","author":"Stout","year":"2012","journal-title":"J. Mol. Biol."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib126","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1002\/pro.532","article-title":"The Cus efflux system removes toxic ions via a methionine shuttle","volume":"20","author":"Su","year":"2010","journal-title":"Protein Sci."},{"key":"10.1016\/j.envres.2026.125669_bib127","doi-asserted-by":"crossref","first-page":"76","DOI":"10.1016\/j.chemosphere.2019.05.195","article-title":"Whole-genome sequencing of an acidophilic Rhodotorula sp. ZM1 and its phenol-degrading capability under acidic conditions","volume":"232","author":"Su","year":"2019","journal-title":"Chemosphere"},{"key":"10.1016\/j.envres.2026.125669_bib128","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2020.116230","article-title":"Elemental sulfur-driven sulfidogenic process under highly acidic conditions for sulfate-rich acid mine drainage treatment: performance and microbial community analysis","volume":"185","author":"Sun","year":"2020","journal-title":"Water Res."},{"issue":"9","key":"10.1016\/j.envres.2026.125669_bib129","doi-asserted-by":"crossref","first-page":"5693","DOI":"10.1007\/s12010-022-04276-x","article-title":"Microbial biofilms for environmental bioremediation of heavy metals: a review","volume":"195","author":"Syed","year":"2023","journal-title":"Appl. Biochem. Biotechnol."},{"key":"10.1016\/j.envres.2026.125669_bib130","doi-asserted-by":"crossref","DOI":"10.1016\/j.polar.2023.101034","article-title":"Bacterial community structure, adaptations and prevalence of antimicrobial resistance in bacteria from Antarctica: a review","volume":"40","author":"Tamang","year":"2024","journal-title":"Polar Sci."},{"issue":"14","key":"10.1016\/j.envres.2026.125669_bib131","doi-asserted-by":"crossref","DOI":"10.1128\/aem.00401-22","article-title":"Development of a markerless deletion mutagenesis system in nitrate-reducing bacterium Rhodanobacter denitrificans","volume":"88","author":"Tao","year":"2022","journal-title":"Appl. Environ. Microbiol."},{"issue":"12","key":"10.1016\/j.envres.2026.125669_bib132","doi-asserted-by":"crossref","first-page":"2662","DOI":"10.1002\/etc.5620201202","article-title":"Acute toxicity of heavy metals to acetate\u2010utilizing mixed cultures of sulfate\u2010reducing bacteria: EC100 and EC50","volume":"20","author":"Utgikar","year":"2001","journal-title":"Environ. Toxicol. Chem."},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib133","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.cbi.2005.12.009","article-title":"Free radicals, metals and antioxidants in oxidative stress-induced cancer","volume":"160","author":"Valko","year":"2006","journal-title":"Chem-Biol. Interact."},{"issue":"10","key":"10.1016\/j.envres.2026.125669_bib134","doi-asserted-by":"crossref","first-page":"916","DOI":"10.1080\/01490451.2017.1300203","article-title":"Effect of cell lysis (CLs) products on acidophilic chemolithotrophic microorganisms and the role of Acidocella species","volume":"34","author":"Vardanyan","year":"2017","journal-title":"Geomicrobiol. J."},{"issue":"2","key":"10.1016\/j.envres.2026.125669_bib135","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1007\/s00248-021-01872-y","article-title":"Metagenomic analysis of biochemical passive reactors during acid mine drainage bioremediation reveals key Co-selected metabolic functions","volume":"84","author":"Villegas-Plazas","year":"2022","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.envres.2026.125669_bib136","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2019.109581","article-title":"A composite taxonomical and functional framework of microbiomes under acid mine drainage bioremediation systems","volume":"251","author":"Villegas-Plazas","year":"2019","journal-title":"J. Environ. Manag."},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib137","doi-asserted-by":"crossref","DOI":"10.1016\/j.jece.2021.106786","article-title":"Performance and microbial response in a multi-stage constructed wetland microcosm co-treating acid mine drainage and domestic wastewater","volume":"9","author":"Wang","year":"2021","journal-title":"J. Environ. Chem. Eng."},{"key":"10.1016\/j.envres.2026.125669_bib138","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2021.117122","article-title":"Methane in wastewater treatment plants: status, characteristics, and bioconversion feasibility by methane oxidizing bacteria for high value-added chemicals production and wastewater treatment","volume":"198","author":"Wang","year":"2021","journal-title":"Water Res."},{"issue":"24","key":"10.1016\/j.envres.2026.125669_bib139","doi-asserted-by":"crossref","first-page":"3619","DOI":"10.3390\/w16243619","article-title":"Rapid Start-Up of Anammox process with a stepwise strategy: system performance, microbial community succession and mechanism exploration","volume":"16","author":"Wang","year":"2024","journal-title":"Water"},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib140","doi-asserted-by":"crossref","first-page":"1224","DOI":"10.1007\/s11356-020-10557-x","article-title":"Variation of heavy metal speciation, antibiotic degradation, and potential horizontal gene transfer during pig manure composting under different chlortetracycline concentration","volume":"28","author":"Wang","year":"2021","journal-title":"Environ. Sci. Pollut. Res. Int."},{"issue":"3","key":"10.1016\/j.envres.2026.125669_bib141","doi-asserted-by":"crossref","first-page":"562","DOI":"10.1007\/s00248-019-01420-9","article-title":"Community composition of nitrite reductase gene sequences in an acid mine drainage environment","volume":"79","author":"Wise","year":"2020","journal-title":"Microb. Ecol."},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib142","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1080\/01490451.2023.2208113","article-title":"Review on soil solidification and heavy metal stabilization by microbial-induced carbonate precipitation (MICP) technology","volume":"40","author":"Xu","year":"2023","journal-title":"Geomicrobiol. J."},{"key":"10.1016\/j.envres.2026.125669_bib143","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2020.114226","article-title":"Uncovering microbial responses to sharp geochemical gradients in a terrace contaminated by acid mine drainage","volume":"261","author":"Xu","year":"2020","journal-title":"Environ. Pollut."},{"issue":"11","key":"10.1016\/j.envres.2026.125669_bib144","doi-asserted-by":"crossref","DOI":"10.1016\/j.isci.2023.108357","article-title":"Single-cell RNA-seq reveals intracellular microbial diversity within immune cells during SARS-CoV-2 infection and recovery","volume":"26","author":"Yadav","year":"2023","journal-title":"iScience"},{"issue":"1","key":"10.1016\/j.envres.2026.125669_bib145","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1016\/j.bj.2015.08.003","article-title":"New mechanisms of bacterial arsenic resistance","volume":"39","author":"Yang","year":"2016","journal-title":"Biomed. J."},{"issue":"6","key":"10.1016\/j.envres.2026.125669_bib146","doi-asserted-by":"crossref","first-page":"518","DOI":"10.3390\/min10060518","article-title":"The important role of dissolved oxygen supply regulated by the hydraulic shear force during the biosynthesis of iron hydroxysulfate minerals","volume":"10","author":"Yang","year":"2020","journal-title":"Minerals"},{"issue":"14","key":"10.1016\/j.envres.2026.125669_bib147","doi-asserted-by":"crossref","DOI":"10.3390\/ijms20143423","article-title":"Biofilms: the microbial \"Protective Clothing\" in extreme environments","volume":"20","author":"Yin","year":"2019","journal-title":"Int. J. Mol. Sci."},{"issue":"5","key":"10.1016\/j.envres.2026.125669_bib148","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1016\/j.eimce.2018.09.003","article-title":"rpoB, katG and inhA mutations in multi-drug resistant strains of Mycobacterium tuberculosis clinical isolates from southeast Mexico","volume":"37","author":"Zenteno-Cuevas","year":"2019","journal-title":"Enfermedades infecciosas y microbiologia clinica (English ed.)"},{"issue":"24","key":"10.1016\/j.envres.2026.125669_bib149","doi-asserted-by":"crossref","first-page":"2564","DOI":"10.1016\/j.scib.2022.11.016","article-title":"Eco-engineering approaches for ocean negative carbon emission","volume":"67","author":"Zhang","year":"2022","journal-title":"Science Bulletin"},{"issue":"4","key":"10.1016\/j.envres.2026.125669_bib150","doi-asserted-by":"crossref","first-page":"314","DOI":"10.1007\/s10230-013-0233-9","article-title":"Simultaneous removal of copper, zinc, and sulfate from coal mine waste in a laboratory SRB bioreactor using lactate or ethanol as carbon sources","volume":"32","author":"Zhang","year":"2013","journal-title":"Mine Water Environ."},{"key":"10.1016\/j.envres.2026.125669_bib151","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/j.mineng.2016.02.008","article-title":"Preparation of immobilized sulfate reducing bacteria (SRB) granules for effective bioremediation of acid mine drainage and bacterial community analysis","volume":"92","author":"Zhang","year":"2016","journal-title":"Miner. Eng."},{"key":"10.1016\/j.envres.2026.125669_bib152","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1016\/j.chemosphere.2016.03.103","article-title":"Preparation of metal-resistant immobilized sulfate reducing bacteria beads for acid mine drainage treatment","volume":"154","author":"Zhang","year":"2016","journal-title":"Chemosphere"},{"key":"10.1016\/j.envres.2026.125669_bib153","doi-asserted-by":"crossref","first-page":"e4","DOI":"10.1180\/gbi.2024.4","article-title":"Microbial extracellular polymeric substances (EPS) in soil: from interfacial behaviour to ecological multifunctionality","volume":"1","author":"Zhang","year":"2024","journal-title":"Geo-Bio Interfaces"},{"key":"10.1016\/j.envres.2026.125669_bib154","series-title":"Biotechnology of Extremophiles: Advances and Challenges","first-page":"177","author":"Zhang","year":"2016"},{"issue":"7","key":"10.1016\/j.envres.2026.125669_bib155","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.03098-16","article-title":"Adaptive evolution of extreme acidophile Sulfobacillus thermosulfidooxidans potentially driven by horizontal gene transfer and gene loss","volume":"83","author":"Zhang","year":"2017","journal-title":"Appl. Environ. Microbiol."}],"container-title":["Environmental Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0013935126020001?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0013935126020001?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T13:32:02Z","timestamp":1790861522000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0013935126020001"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,11]]},"references-count":155,"alternative-id":["S0013935126020001"],"URL":"https:\/\/doi.org\/10.1016\/j.envres.2026.125669","relation":{},"ISSN":["0013-9351"],"issn-type":[{"value":"0013-9351","type":"print"}],"subject":[],"published":{"date-parts":[[2026,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Multidimensional research progress on microbial resistance mechanisms and ecological bioremediation strategies under acid mine drainage stress","name":"articletitle","label":"Article Title"},{"value":"Environmental Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.envres.2026.125669","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier Inc. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"125669"}}