{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,10]],"date-time":"2026-10-10T17:49:06Z","timestamp":1791654546533,"version":"4.3.4"},"reference-count":48,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Fungal Genetics and Biology"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.fgb.2026.104119","type":"journal-article","created":{"date-parts":[[2026,9,27]],"date-time":"2026-09-27T14:29:05Z","timestamp":1790519345000},"page":"104119","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Genomic insights into M. phaseolina: Multifactorial virulence via secreted effectors, carbohydrate enzymes and secondary metabolites"],"prefix":"10.1016","volume":"186","author":[{"given":"Ashish","family":"Kumar","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vedant","family":"Gautam","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anurag","family":"Chouhan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stuti","family":"Sharma","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Radheshyam","family":"Sharma","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"family":"Mukesh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vibhootee","family":"Garg","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.","family":"Shivramakrishnan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manoj Kumar","family":"Yadav","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"8","key":"10.1016\/j.fgb.2026.104119_bb0005","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1002230","article-title":"Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea","volume":"7","author":"Amselem","year":"2011","journal-title":"PLoS Genet."},{"issue":"4","key":"10.1016\/j.fgb.2026.104119_bb0010","doi-asserted-by":"crossref","first-page":"169","DOI":"10.1007\/s11046-010-9308-3","article-title":"Variability of United States isolates of M. Phaseolina based on simple sequence repeats and cross genus transferability to related fungal species","volume":"170","author":"Baird","year":"2010","journal-title":"Mycopathologia"},{"issue":"W1","key":"10.1016\/j.fgb.2026.104119_bb0015","doi-asserted-by":"crossref","first-page":"W46","DOI":"10.1093\/nar\/gkad344","article-title":"antiSMASH 7.0: new and improved predictions for detection, regulation, and visualisation","volume":"51","author":"Blin","year":"2023","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.fgb.2026.104119_bb0020","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1146\/annurev.arplant.57.032905.105346","article-title":"A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors","volume":"60","author":"Boller","year":"2009","journal-title":"Annu. Rev. Plant Biol."},{"issue":"12","key":"10.1016\/j.fgb.2026.104119_bb0025","doi-asserted-by":"crossref","first-page":"5825","DOI":"10.1093\/molbev\/msab293","article-title":"eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale","volume":"38","author":"Cantalapiedra","year":"2021","journal-title":"Mol. Biol. Evol."},{"issue":"5994","key":"10.1016\/j.fgb.2026.104119_bb0030","doi-asserted-by":"crossref","first-page":"953","DOI":"10.1126\/science.1190859","article-title":"Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants","volume":"329","author":"de Jonge","year":"2010","journal-title":"Science"},{"issue":"3","key":"10.1016\/j.fgb.2026.104119_bb0035","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1093\/gbe\/evx030","article-title":"The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host-range pathogens","volume":"9","author":"Derbyshire","year":"2017","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.fgb.2026.104119_bb0040","series-title":"Biology and Pathology of M. phaseolina","author":"Dhingra","year":"1978"},{"issue":"5","key":"10.1016\/j.fgb.2026.104119_bb0045","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02439-22","article-title":"Chromosome-level genome sequences, comparative genomic analyses, and secondary-metabolite biosynthesis evaluation of the medicinal edible mushroom Laetiporus sulphureus","volume":"10","author":"Dong","year":"2022","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.fgb.2026.104119_bb0050","author":"Farr"},{"issue":"7083","key":"10.1016\/j.fgb.2026.104119_bb0055","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1038\/nature04567","article-title":"A P-type ATPase required for rice blast disease and induction of host resistance","volume":"440","author":"Gilbert","year":"2006","journal-title":"Nature"},{"issue":"11","key":"10.1016\/j.fgb.2026.104119_bb0060","doi-asserted-by":"crossref","first-page":"800","DOI":"10.1038\/nrmicro3119","article-title":"Filamentous plant pathogen effectors in action","volume":"11","author":"Giraldo","year":"2013","journal-title":"Nat. Rev. Microbiol."},{"issue":"6","key":"10.1016\/j.fgb.2026.104119_bb0065","doi-asserted-by":"crossref","first-page":"515","DOI":"10.1111\/j.1364-3703.2004.00252.x","article-title":"Heading for disaster: Fusarium graminearum on cereal crops","volume":"5","author":"Goswami","year":"2004","journal-title":"Mol. Plant Pathol."},{"issue":"4","key":"10.1016\/j.fgb.2026.104119_bb0070","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1111\/j.1439-0434.2012.01884.x","article-title":"Biology, epidemiology and management of the pathogenic fungus M. Phaseolina (Tassi) Goid with special reference to charcoal rot of soybean (Glycine max (L.) Merrill)","volume":"160","author":"Gupta","year":"2012","journal-title":"J. Phytopathol."},{"key":"10.1016\/j.fgb.2026.104119_bb0075","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2164-13-493","article-title":"Tools to kill: genome of one of the most destructive plant pathogenic fungi M. phaseolina","volume":"13","author":"Islam","year":"2012","journal-title":"BMC Genomics"},{"issue":"2","key":"10.1016\/j.fgb.2026.104119_bb0080","doi-asserted-by":"crossref","first-page":"202","DOI":"10.1094\/MPMI.2004.17.2.202","article-title":"Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue","volume":"17","author":"Johansson","year":"2004","journal-title":"Mol. Plant Microbe Interact."},{"key":"10.1016\/j.fgb.2026.104119_bb0085","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1146\/annurev.phyto.44.070505.143436","article-title":"A catalogue of the effector secretome of plant pathogenic oomycetes","volume":"44","author":"Kamoun","year":"2006","journal-title":"Annu. Rev. Phytopathol."},{"issue":"2","key":"10.1016\/j.fgb.2026.104119_bb0090","doi-asserted-by":"crossref","first-page":"136","DOI":"10.3109\/1040841X.2011.640977","article-title":"Emerging phytopathogen M. Phaseolina: biology, economic importance and current diagnostic trends","volume":"38","author":"Kaur","year":"2012","journal-title":"Crit. Rev. Microbiol."},{"issue":"12","key":"10.1016\/j.fgb.2026.104119_bb0095","doi-asserted-by":"crossref","first-page":"937","DOI":"10.1038\/nrmicro1286","article-title":"Fungal secondary metabolism \u2014 from biochemistry to genomics","volume":"3","author":"Keller","year":"2005","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.fgb.2026.104119_bb0100","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1146\/annurev-phyto-102313-045831","article-title":"Plant cell wall\u2013degrading enzymes and their secretion in plant-pathogenic fungi","volume":"52","author":"Kubicek","year":"2014","journal-title":"Annu. Rev. Phytopathol."},{"key":"10.1016\/j.fgb.2026.104119_bb0105","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1186\/1754-6834-6-41","article-title":"Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes","volume":"6","author":"Levasseur","year":"2013","journal-title":"Biotechnol. Biofuels"},{"key":"10.1016\/j.fgb.2026.104119_bb0110","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1146\/annurev-arplant-043014-114623","article-title":"Fungal effectors and plant immunity","volume":"66","author":"Lo Presti","year":"2015","journal-title":"Annu. Rev. Plant Biol."},{"issue":"D1","key":"10.1016\/j.fgb.2026.104119_bb0115","doi-asserted-by":"crossref","first-page":"D490","DOI":"10.1093\/nar\/gkt1178","article-title":"The carbohydrate-active enzymes database (CAZy) in 2013","volume":"42","author":"Lombard","year":"2014","journal-title":"Nucleic Acids Res."},{"issue":"7287","key":"10.1016\/j.fgb.2026.104119_bb0120","doi-asserted-by":"crossref","first-page":"367","DOI":"10.1038\/nature08850","article-title":"Comparative genomics reveals mobile pathogenicity chromosomes in fusarium","volume":"464","author":"Ma","year":"2010","journal-title":"Nature"},{"issue":"2","key":"10.1016\/j.fgb.2026.104119_bb0125","doi-asserted-by":"crossref","first-page":"756","DOI":"10.1104\/pp.111.176347","article-title":"Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat","volume":"156","author":"Marshall","year":"2011","journal-title":"Plant Physiol."},{"key":"10.1016\/j.fgb.2026.104119_bb0130","series-title":"Methods for Research on Soilborne Phytopathogenic Fungi","first-page":"134","article-title":"Macrophomina","author":"Mihail","year":"1992"},{"issue":"10","key":"10.1016\/j.fgb.2026.104119_bb0135","doi-asserted-by":"crossref","first-page":"1596","DOI":"10.1139\/b95-172","article-title":"Interpreting variability among isolates of M. Phaseolina in pathogenicity, pycnidium production, and chlorate utilization","volume":"73","author":"Mihail","year":"1995","journal-title":"Can. J. Bot."},{"issue":"9","key":"10.1016\/j.fgb.2026.104119_bb0140","doi-asserted-by":"crossref","first-page":"1060","DOI":"10.1038\/ng.2372","article-title":"Lifestyle transitions in plant pathogenic <i>Colletotrichum<\/i> fungi deciphered by genome and transcriptome analyses","volume":"44","author":"O\u2019Connell","year":"2012","journal-title":"Nat. Genet."},{"issue":"10","key":"10.1016\/j.fgb.2026.104119_bb0145","doi-asserted-by":"crossref","first-page":"2836","DOI":"10.1105\/tpc.106.045633","article-title":"NPS6, encoding a nonribosomal peptide synthetase involved in siderophore-mediated iron metabolism, is a conserved virulence determinant of plant pathogenic ascomycetes","volume":"18","author":"Oide","year":"2006","journal-title":"Plant Cell"},{"issue":"11","key":"10.1016\/j.fgb.2026.104119_bb0150","doi-asserted-by":"crossref","first-page":"2019","DOI":"10.1105\/tpc.12.11.2019","article-title":"A telomeric avirulence gene determines efficacy for the rice blast resistance gene pi-ta","volume":"12","author":"Orbach","year":"2000","journal-title":"Plant Cell"},{"issue":"5","key":"10.1016\/j.fgb.2026.104119_bb0155","doi-asserted-by":"crossref","DOI":"10.3390\/jof11050395","article-title":"Genomic sequencing and characterization of two Auricularia species from the Qinling region: insights into evolutionary dynamics and secondary metabolite potential","volume":"11","author":"Qi","year":"2025","journal-title":"J. Fungi"},{"issue":"9","key":"10.1016\/j.fgb.2026.104119_bb0160","doi-asserted-by":"crossref","DOI":"10.3390\/jof11090621","article-title":"Haplotype-phased chromosome-level genome assembly of Floccularia luteovirens provides insights into its taxonomy, adaptive evolution, and biosynthetic potential","volume":"11","author":"Qi","year":"2025","journal-title":"J. Fungi"},{"issue":"1","key":"10.1016\/j.fgb.2026.104119_bb0165","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1111\/j.1365-294X.2009.04433.x","article-title":"Relatedness of M. Phaseolina isolates from tallgrass prairie, maize, soybean, and sorghum","volume":"19","author":"Saleh","year":"2010","journal-title":"Mol. Ecol."},{"issue":"2","key":"10.1016\/j.fgb.2026.104119_bb0170","first-page":"250","article-title":"Genetic diversity in M. Phaseolina, the causal agent of charcoal rot","volume":"53","author":"Sarr","year":"2014","journal-title":"Phytopathol. Mediterr."},{"issue":"19","key":"10.1016\/j.fgb.2026.104119_bb0175","doi-asserted-by":"crossref","first-page":"3210","DOI":"10.1093\/bioinformatics\/btv351","article-title":"BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs","volume":"31","author":"Sim\u00e3o","year":"2015","journal-title":"Bioinformatics"},{"issue":"2","key":"10.1016\/j.fgb.2026.104119_bb0180","doi-asserted-by":"crossref","first-page":"146","DOI":"10.1094\/MPMI-08-21-0201-R","article-title":"EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes","volume":"35","author":"Sperschneider","year":"2022","journal-title":"Mol. Plant Microbe Interact."},{"key":"10.1016\/j.fgb.2026.104119_bb0185","doi-asserted-by":"crossref","DOI":"10.1038\/srep44598","article-title":"LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell","volume":"7","author":"Sperschneider","year":"2017","journal-title":"Sci. Rep."},{"issue":"2","key":"10.1016\/j.fgb.2026.104119_bb0190","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.FUNK-0034-2016","article-title":"Cell biology of hyphal growth","volume":"5","author":"Steinberg","year":"2017","journal-title":"Microbiol. Spectr."},{"issue":"2","key":"10.1016\/j.fgb.2026.104119_bb0195","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1006\/fgbi.2001.1269","article-title":"Botrytis cinerea endopolygalacturonase genes are differentially expressed in various plant tissues","volume":"33","author":"ten Have","year":"2001","journal-title":"Fungal Genet. Biol."},{"issue":"9","key":"10.1016\/j.fgb.2026.104119_bb0200","first-page":"1703","article-title":"MAP kinase and protein kinase A\u2013dependent mobilization of triacylglycerol and glycogen during appressorium turgor generation by Magnaporthe grisea","volume":"12","author":"Thines","year":"2000","journal-title":"Plant Cell"},{"issue":"Suppl. 1","key":"10.1016\/j.fgb.2026.104119_bb0205","article-title":"Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the gene ontology","volume":"10","author":"Torto-Alalibo","year":"2009","journal-title":"BMC Microbiol."},{"issue":"9","key":"10.1016\/j.fgb.2026.104119_bb0210","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1003820","article-title":"The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution and saprotrophic lifestyle","volume":"9","author":"Traeger","year":"2013","journal-title":"PLoS Genet."},{"issue":"D1","key":"10.1016\/j.fgb.2026.104119_bb0215","first-page":"D613","article-title":"PHI-base: the pathogen\u2013host interactions database","volume":"48","author":"Urban","year":"2020","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"10.1016\/j.fgb.2026.104119_bb0220","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1111\/mpp.12384","article-title":"A gapless genome sequence of the fungus Botrytis cinerea","volume":"18","author":"van Kan","year":"2017","journal-title":"Mol. Plant Pathol."},{"issue":"6","key":"10.1016\/j.fgb.2026.104119_bb0225","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: resolving bacterial genome assemblies from short and long sequencing reads","volume":"13","author":"Wick","year":"2017","journal-title":"PLoS Comput. Biol."},{"issue":"1","key":"10.1016\/j.fgb.2026.104119_bb0230","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1186\/s12864-024-10528-3","article-title":"Genome-wide characterization and metabolite profiling of Cyathus olla: insights into the biosynthesis of medicinal compounds","volume":"25","author":"Xie","year":"2024","journal-title":"BMC Genomics"},{"key":"10.1016\/j.fgb.2026.104119_bb0235","article-title":"Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi","volume":"15","author":"Zhao","year":"2013","journal-title":"BMC Genomics"},{"key":"10.1016\/j.fgb.2026.104119_bb0240","series-title":"Biotechnology in China I: from bioreaction to bioseparation and bioremediation","first-page":"79","article-title":"Secondary metabolites from higher fungi: discovery, bioactivity, and bioproduction","author":"Zhong","year":"2009"}],"container-title":["Fungal Genetics and Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1087184526000630?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1087184526000630?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,10]],"date-time":"2026-10-10T17:16:54Z","timestamp":1791652614000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1087184526000630"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":48,"alternative-id":["S1087184526000630"],"URL":"https:\/\/doi.org\/10.1016\/j.fgb.2026.104119","relation":{},"ISSN":["1087-1845"],"issn-type":[{"value":"1087-1845","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genomic insights into M. phaseolina: Multifactorial virulence via secreted effectors, carbohydrate enzymes and secondary metabolites","name":"articletitle","label":"Article Title"},{"value":"Fungal Genetics and Biology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.fgb.2026.104119","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"104119"}}