{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,21]],"date-time":"2026-10-21T02:39:57Z","timestamp":1792550397365,"version":"4.5.0"},"reference-count":83,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32272444"],"award-info":[{"award-number":["32272444"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Food Microbiology"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.fm.2026.105093","type":"journal-article","created":{"date-parts":[[2026,3,26]],"date-time":"2026-03-26T08:26:34Z","timestamp":1774513594000},"page":"105093","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":1,"special_numbering":"C","title":["Global prevalence and distribution of bla-harboring Salmonella: A genome-wide association study of cephalosporin resistance mechanisms"],"prefix":"10.1016","volume":"138","author":[{"given":"Qiuping","family":"Yang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jingsen","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tianxi","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mei","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huanjing","family":"Sheng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shenghui","family":"Cui","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Baowei","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"5","key":"10.1016\/j.fm.2026.105093_bib1","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.14202\/vetworld.2022.1297-1304","article-title":"Retail chicken giblets contaminated with extended-spectrum cephalosporin- and carbapenem-resistant Salmonella enterica carrying blaCMY-2","volume":"15","author":"Abdel-Kader","year":"2022","journal-title":"Vet. World"},{"key":"10.1016\/j.fm.2026.105093_bib2","doi-asserted-by":"crossref","DOI":"10.1016\/j.meegid.2024.105632","article-title":"Antibiotic resistance trends in high-risk lineages of Salmonella enterica serovar Typhi: a study spanning pre to post COVID-19 pandemic","volume":"123","author":"Abro","year":"2024","journal-title":"Infect. Genet. Evol.: journal of molecular epidemiology and evolutionary genetics in infectious diseases"},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib3","first-page":"137","article-title":"Occurrence and characterization of resistance to extended-spectrum cephalosporins mediated by beta-lactamase CMY-2 in Salmonella isolated from food-producing animals in Canada","volume":"66","author":"Allen","year":"2002","journal-title":"Canadian journal of veterinary research = Revue canadienne de recherche veterinaire"},{"key":"10.1016\/j.fm.2026.105093_bib4","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2023.110297","article-title":"A review of the global emergence of multidrug-resistant Salmonella enterica subsp. enterica serovar Infantis","volume":"403","author":"Alvarez","year":"2023","journal-title":"Int. J. Food Microbiol."},{"issue":"9","key":"10.1016\/j.fm.2026.105093_bib5","doi-asserted-by":"crossref","first-page":"761","DOI":"10.1080\/14787210.2024.2368989","article-title":"The prevalence of antimicrobial drug resistance of non-typhoidal Salmonella in human infections in sub-Saharan Africa: a systematic review and meta-analysis","volume":"22","author":"Amir","year":"2024","journal-title":"Expert Rev. Anti-infect. Ther."},{"issue":"2","key":"10.1016\/j.fm.2026.105093_bib6","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1016\/j.cmi.2015.12.004","article-title":"Salmonellosis: the role of poultry meat","volume":"22","author":"Antunes","year":"2016","journal-title":"Clin. Microbiol. Infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases"},{"issue":"7","key":"10.1016\/j.fm.2026.105093_bib7","doi-asserted-by":"crossref","first-page":"1945","DOI":"10.1016\/j.micinf.2005.12.029","article-title":"Salmonella resistant to extended-spectrum cephalosporins: prevalence and epidemiology","volume":"8","author":"Arlet","year":"2006","journal-title":"Microb. Infect."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib8","doi-asserted-by":"crossref","first-page":"134","DOI":"10.3390\/microorganisms12010134","article-title":"Predicting Salmonella MIC and deciphering genomic determinants of antibiotic resistance and susceptibility","volume":"12","author":"Ayoola","year":"2024","journal-title":"Microorganisms"},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib9","doi-asserted-by":"crossref","first-page":"969","DOI":"10.1128\/AAC.01009-09","article-title":"Updated functional classification of beta-lactamases","volume":"54","author":"Bush","year":"2010","journal-title":"Antimicrob. Agents Chemother."},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib10","doi-asserted-by":"crossref","first-page":"dlab092","DOI":"10.1093\/jacamr\/dlab092","article-title":"Extended-spectrum \u03b2-lactamases: an update on their characteristics, epidemiology and detection","volume":"3","author":"Castanheira","year":"2021","journal-title":"JAC-antimicrobial resistance"},{"issue":"8","key":"10.1016\/j.fm.2026.105093_bib13","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1004547","article-title":"Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes","volume":"10","author":"Chewapreecha","year":"2014","journal-title":"PLoS Genet."},{"key":"10.1016\/j.fm.2026.105093_bib14","series-title":"Performance Standards for Antimicrobial Susceptibility Testing","year":"2023"},{"issue":"4","key":"10.1016\/j.fm.2026.105093_bib15","article-title":"Genome-wide analysis in Escherichia coli unravels a high level of genetic homoplasy associated with cefotaxime resistance","volume":"7","author":"Coolen","year":"2021","journal-title":"Microb. Genom."},{"key":"10.1016\/j.fm.2026.105093_bib16","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2023.1242693","article-title":"Multi-approach methods to predict cryptic carbapenem resistance mechanisms in Klebsiella pneumoniae detected in Central Italy","volume":"14","author":"Cornacchia","year":"2023","journal-title":"Front. Microbiol."},{"issue":"24","key":"10.1016\/j.fm.2026.105093_bib17","doi-asserted-by":"crossref","first-page":"8005","DOI":"10.1128\/AEM.01325-07","article-title":"Molecular epidemiology of blaCMY-2 plasmids carried by Salmonella enterica and Escherichia coli isolates from cattle in the Pacific Northwest","volume":"73","author":"Daniels","year":"2007","journal-title":"Appl. Environ. Microbiol."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib18","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01370-21","article-title":"Linear regression equations to predict \u03b2-Lactam, macrolide, lincosamide, and fluoroquinolone MICs from molecular antimicrobial resistance determinants in Streptococcus pneumoniae","volume":"66","author":"Demczuk","year":"2022","journal-title":"Antimicrob. Agents Chemother."},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib19","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.02005-19","article-title":"Equations to predict antimicrobial MICs in Neisseria gonorrhoeae using molecular antimicrobial resistance determinants","volume":"64","author":"Demczuk","year":"2020","journal-title":"Antimicrob. Agents Chemother."},{"issue":"12","key":"10.1016\/j.fm.2026.105093_bib20","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1007453","article-title":"A genome-wide association analysis reveals a potential role for recombination in the evolution of antimicrobial resistance in Burkholderia multivorans","volume":"14","author":"Diaz Caballero","year":"2018","journal-title":"PLoS Pathog."},{"issue":"2","key":"10.1016\/j.fm.2026.105093_bib21","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02207-23","article-title":"Nosocomial surveillance of multidrug-resistant Acinetobacter baumannii: a genomic epidemiological study","volume":"12","author":"Duan","year":"2024","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.fm.2026.105093_bib22","doi-asserted-by":"crossref","DOI":"10.1038\/nmicrobiol.2016.41","article-title":"Identifying lineage effects when controlling for population structure improves power in bacterial association studies","volume":"1","author":"Earle","year":"2016","journal-title":"Nat. Microbiol."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib23","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1097\/MRM.0b013e3283587727","article-title":"\u03b2-Lactams: chemical structure, mode of action and mechanisms of resistance","volume":"24","author":"Fernandes","year":"2013","journal-title":"Reviews and Research in Medical Microbiology"},{"issue":"7","key":"10.1016\/j.fm.2026.105093_bib24","article-title":"Achromobacter spp. genetic adaptation in cystic fibrosis","volume":"7","author":"Gabrielaite","year":"2021","journal-title":"Microb. Genom."},{"key":"10.1016\/j.fm.2026.105093_bib25","series-title":"Foodborne Pathogens and Disease","article-title":"Prediction of antibiotic resistance phenotypes and minimum inhibitory concentrations in Salmonella using machine learning analysis of its Pan-Genome and Pan-Resistome features","author":"He","year":"2025"},{"key":"10.1016\/j.fm.2026.105093_bib26","doi-asserted-by":"crossref","first-page":"1305","DOI":"10.2147\/IDR.S355213","article-title":"Prevalence and trends in antimicrobial susceptibility patterns of multi-drug-resistance non-typhoidal Salmonella in central Thailand, 2012-2019","volume":"15","author":"Hengkrawit","year":"2022","journal-title":"Infect. Drug Resist."},{"key":"10.1016\/j.fm.2026.105093_bib27","doi-asserted-by":"crossref","first-page":"1322","DOI":"10.3389\/fmicb.2017.01322","article-title":"Salmonella enterica serovar Infantis from food and human infections, Switzerland, 2010-2015: poultry-related multidrug resistant clones and an emerging ESBL producing clonal lineage","volume":"8","author":"Hindermann","year":"2017","journal-title":"Front. Microbiol."},{"issue":"7","key":"10.1016\/j.fm.2026.105093_bib28","doi-asserted-by":"crossref","first-page":"1460","DOI":"10.3201\/eid3107.241987","article-title":"Outbreak of ceftriaxone-resistant Salmonella enterica Serovar Typhi, Bangladesh, 2024","volume":"31","author":"Hooda","year":"2025","journal-title":"Emerg. Infect. Dis."},{"issue":"8","key":"10.1016\/j.fm.2026.105093_bib29","doi-asserted-by":"crossref","first-page":"1238","DOI":"10.1089\/mdr.2019.0045","article-title":"Comparative genomic analysis of virulence, antimicrobial resistance, and plasmid profiles of Salmonella Dublin isolated from sick cattle, retail beef, and humans in the United States","volume":"25","author":"Hsu","year":"2019","journal-title":"Microb. Drug Resist."},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib30","doi-asserted-by":"crossref","DOI":"10.1128\/jcm.01431-22","article-title":"Machine-learning model for prediction of cefepime susceptibility in Escherichia coli from whole-genome sequencing data","volume":"61","author":"Humphries","year":"2023","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.fm.2026.105093_bib31","doi-asserted-by":"crossref","DOI":"10.1016\/j.micpath.2021.105040","article-title":"Genetic basis of molecular mechanisms in \u03b2-lactam resistant gram-negative bacteria","volume":"158","author":"Hussain","year":"2021","journal-title":"Microb. Pathog."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib32","doi-asserted-by":"crossref","first-page":"7690","DOI":"10.1038\/s41467-023-43549-9","article-title":"Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species","volume":"14","author":"Hyun","year":"2023","journal-title":"Nat. Commun."},{"issue":"10","key":"10.1016\/j.fm.2026.105093_bib33","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgph.0004773","article-title":"Phenotypic markers misclassify isolates of Salmonella Typhimurium as S. Typhi, but were correctly identified by whole genome sequencing during a septicemia study in western Kenya","volume":"5","author":"Kaingu","year":"2025","journal-title":"PLOS Glob. Publ. Health"},{"key":"10.1016\/j.fm.2026.105093_bib34","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1016\/j.jgar.2025.04.019","article-title":"Comprehensive analysis of \u03b2-lactam resistant non-typhoidal Salmonella isolates: phenotypic and genotypic insights from clinical samples in Japan","volume":"43","author":"Khalifa","year":"2025","journal-title":"Journal of global antimicrobial resistance"},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib35","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.00119-23","article-title":"Concordance between genotypic and phenotypic drug-resistant profiles of Shigella isolates from Taiyuan city, Shanxi province, China, 2005 to 2016","volume":"11","author":"Kong","year":"2023","journal-title":"Microbiol. Spectr."},{"issue":"12","key":"10.1016\/j.fm.2026.105093_bib36","doi-asserted-by":"crossref","first-page":"770","DOI":"10.1089\/fpd.2018.2468","article-title":"Increase in ceftriaxone resistance and widespread extended-spectrum \u03b2-lactamases genes among Salmonella enterica from human and nonhuman sources","volume":"15","author":"Kuang","year":"2018","journal-title":"Foodborne pathogens and disease"},{"key":"10.1016\/j.fm.2026.105093_bib37","doi-asserted-by":"crossref","DOI":"10.1038\/ncomms12797","article-title":"Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes","volume":"7","author":"Lees","year":"2016","journal-title":"Nat. Commun."},{"key":"10.1016\/j.fm.2026.105093_bib38","article-title":"Characterization of extended-spectrum cephalosporins and fluoroquinolone resistance of a Salmonella enterica serovar Thompson isolate from ready-to-eat pork product in China","volume":"13","author":"Li","year":"2022","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib39","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1186\/s44280-023-00001-3","article-title":"Antimicrobial resistance profiles of Salmonella isolates from human diarrhea cases in China: an eight-year surveilance study","volume":"1","author":"Li","year":"2023","journal-title":"One Health Advances"},{"key":"10.1016\/j.fm.2026.105093_bib40","article-title":"Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study","author":"Lipworth","year":"2026","journal-title":"Lancet Microbe"},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib41","doi-asserted-by":"crossref","first-page":"1612","DOI":"10.1038\/s41467-024-45761-7","article-title":"The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies","volume":"15","author":"Lipworth","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.fm.2026.105093_bib42","article-title":"Epidemic trend of Salmonella from swines and broilers in China from 2014 to 2023 and genetic evolution analysis of ESBLs-producing strains","volume":"16","author":"Liu","year":"2025","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib43","doi-asserted-by":"crossref","first-page":"4126","DOI":"10.1038\/s41467-020-17980-1","article-title":"Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae","volume":"11","author":"Ma","year":"2020","journal-title":"Nat. Commun."},{"issue":"4","key":"10.1016\/j.fm.2026.105093_bib44","doi-asserted-by":"crossref","DOI":"10.1128\/mSystems.00211-19","article-title":"Identification of primary antimicrobial resistance drivers in agricultural nontyphoidal Salmonella enterica serovars by using machine learning","volume":"4","author":"Maguire","year":"2019","journal-title":"mSystems"},{"issue":"6","key":"10.1016\/j.fm.2026.105093_bib45","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00108-19","article-title":"Genomic investigation of the emergence of invasive multidrug-resistant Salmonella enterica serovar Dublin in humans and animals in Canada","volume":"63","author":"Mangat","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.fm.2026.105093_bib46","doi-asserted-by":"crossref","first-page":"723","DOI":"10.1093\/jac\/dkp249","article-title":"Characterization of Canadian cefoxitin-resistant non-typhoidal Salmonella isolates, 2005-06","volume":"64","author":"Mataseje","year":"2009","journal-title":"J. Antimicrob. Chemother."},{"issue":"9","key":"10.1016\/j.fm.2026.105093_bib47","doi-asserted-by":"crossref","first-page":"5515","DOI":"10.1128\/AAC.01030-16","article-title":"Whole-genome sequencing for detecting antimicrobial resistance in nontyphoidal Salmonella","volume":"60","author":"McDermott","year":"2016","journal-title":"Antimicrob. Agents Chemother."},{"issue":"2","key":"10.1016\/j.fm.2026.105093_bib48","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.ARBA-0009-2017","article-title":"Antimicrobial resistance: a one health perspective","volume":"6","author":"McEwen","year":"2018","journal-title":"Microbiol. Spectr."},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib49","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1007\/s15010-019-01291-9","article-title":"AmpC \u03b2-lactamase-producing Enterobacterales: what a clinician should know","volume":"47","author":"Meini","year":"2019","journal-title":"Infection"},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib50","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-025-02972-2","article-title":"Clonal spread of blaCTX-M-65 producing Salmonella enterica serovars detected in poultry retail meat in North Carolina, USA","volume":"15","author":"Monte","year":"2025","journal-title":"Sci. Rep."},{"issue":"10","key":"10.1016\/j.fm.2026.105093_bib51","doi-asserted-by":"crossref","first-page":"1626","DOI":"10.3390\/microorganisms8101626","article-title":"Retrospective analysis on antimicrobial resistance trends and prevalence of \u03b2-lactamases in Escherichia coli and ESKAPE pathogens isolated from arabian patients during 2000-2020","volume":"8","author":"Nasser","year":"2020","journal-title":"Microorganisms"},{"issue":"2","key":"10.1016\/j.fm.2026.105093_bib52","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.01260-18","article-title":"Using machine learning to predict antimicrobial MICs and associated genomic features for nontyphoidal Salmonella","volume":"57","author":"Nguyen","year":"2019","journal-title":"J. Clin. Microbiol."},{"issue":"9","key":"10.1016\/j.fm.2026.105093_bib53","doi-asserted-by":"crossref","first-page":"3016","DOI":"10.1128\/JCM.00859-12","article-title":"Rapid detection of extended-spectrum-\u03b2-lactamase-producing Enterobacteriaceae","volume":"50","author":"Nordmann","year":"2012","journal-title":"J. Clin. Microbiol."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib54","doi-asserted-by":"crossref","first-page":"226","DOI":"10.1186\/s12866-019-1598-0","article-title":"Characterization of Salmonella Dublin isolated from bovine and human hosts","volume":"19","author":"Paudyal","year":"2019","journal-title":"BMC Microbiol."},{"issue":"10","key":"10.1016\/j.fm.2026.105093_bib55","article-title":"Third generation cephalosporin resistance in clinical non-typhoidal Salmonella enterica in Germany and emergence of blaCTX-M-harbouring pESI plasmids","volume":"7","author":"Pietsch","year":"2021","journal-title":"Microb. Genom."},{"key":"10.1016\/j.fm.2026.105093_bib56","doi-asserted-by":"crossref","first-page":"e14","DOI":"10.1017\/S0950268822001509","article-title":"Integrated surveillance of extended-spectrum beta-lactamase (ESBL)-producing Salmonella and Escherichia coli from humans and animal species raised for human consumption in Canada from 2012 to 2017","volume":"151","author":"Primeau","year":"2022","journal-title":"Epidemiol. Infect."},{"issue":"11","key":"10.1016\/j.fm.2026.105093_bib57","doi-asserted-by":"crossref","DOI":"10.1016\/j.heliyon.2022.e11571","article-title":"The outbreaks and prevalence of antimicrobial resistant Salmonella in poultry in the United States: an overview","volume":"8","author":"Punchihewage-Don","year":"2022","journal-title":"Heliyon"},{"key":"10.1016\/j.fm.2026.105093_bib58","doi-asserted-by":"crossref","DOI":"10.3389\/frabi.2024.1448796","article-title":"Defense mechanisms of Salmonella against antibiotics: a review","volume":"3","author":"Punchihewage-Don","year":"2024","journal-title":"Frontiers in Antibiotics"},{"key":"10.1016\/j.fm.2026.105093_bib59","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1016\/j.ijfoodmicro.2017.02.016","article-title":"Characterization of extended-spectrum \u03b2-lactamases (ESBLs)-producing Salmonella in retail raw chicken carcasses","volume":"248","author":"Qiao","year":"2017","journal-title":"Int. J. Food Microbiol."},{"issue":"2","key":"10.1016\/j.fm.2026.105093_bib60","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijantimicag.2024.107422","article-title":"One Health distribution of beta-lactamases in Enterobacterales in the United States: a systematic review and meta-analysis","volume":"65","author":"Rahman","year":"2025","journal-title":"Int. J. Antimicrob. Agents"},{"key":"10.1016\/j.fm.2026.105093_bib61","doi-asserted-by":"crossref","first-page":"451","DOI":"10.3389\/fpubh.2020.00451","article-title":"Bacterial genome wide association studies (bGWAS) and transcriptomics identifies cryptic antimicrobial resistance mechanisms in Acinetobacter baumannii","volume":"8","author":"Roe","year":"2020","journal-title":"Front. Public Health"},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib62","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1101\/gr.180190.114","article-title":"Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains","volume":"25","author":"Salipante","year":"2015","journal-title":"Genome Res."},{"key":"10.1016\/j.fm.2026.105093_bib63","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2023.110305","article-title":"Prevalence, antibiotic susceptibility and genomic analysis of Salmonella from retail meats in Shaanxi, China","volume":"403","author":"Sheng","year":"2023","journal-title":"Int. J. Food Microbiol."},{"issue":"Pt 2","key":"10.1016\/j.fm.2026.105093_bib64","article-title":"Niche-specific evolution and gene exchange of Salmonella in retail pork and chicken","volume":"197","author":"Sheng","year":"2024","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105093_bib65","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.764787","article-title":"Prevalence and characteristics of ceftriaxone-resistant Salmonella in children's hospital in Hangzhou, China","volume":"12","author":"Shi","year":"2021","journal-title":"Front. Microbiol."},{"issue":"17","key":"10.1016\/j.fm.2026.105093_bib66","doi-asserted-by":"crossref","first-page":"2770","DOI":"10.3390\/ani13172770","article-title":"Association between phenotypes of antimicrobial resistance, ESBL resistance genes, and virulence genes of Salmonella isolated from chickens in Sichuan, China","volume":"13","author":"Shu","year":"2023","journal-title":"Animals"},{"key":"10.1016\/j.fm.2026.105093_bib67","doi-asserted-by":"crossref","first-page":"RP102253","DOI":"10.7554\/eLife.102253","article-title":"Distinct adaptation and epidemiological success of different genotypes within Salmonella enterica serovar Dublin","volume":"13","author":"Sia","year":"2025","journal-title":"eLife"},{"key":"10.1016\/j.fm.2026.105093_bib68","doi-asserted-by":"crossref","DOI":"10.1016\/j.microb.2025.100309","article-title":"A one health approach addressing poultry-associated antimicrobial resistance: human, animal and environmental perspectives","volume":"7","author":"Singh","year":"2025","journal-title":"Microbe"},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib69","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1089\/mdr.2012.0178","article-title":"Occurrence of \u03b2-lactamase genes among non-Typhi Salmonella enterica isolated from humans, food animals, and retail meats in the United States and Canada","volume":"19","author":"Sj\u00f6lund-Karlsson","year":"2013","journal-title":"Microb. Drug Resist."},{"issue":"9","key":"10.1016\/j.fm.2026.105093_bib70","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0249617","article-title":"Antimicrobial resistance and genomic characterization of Salmonella Dublin isolates in cattle from the United States","volume":"16","author":"Srednik","year":"2021","journal-title":"PLoS One"},{"key":"10.1016\/j.fm.2026.105093_bib71","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1038\/s43586-021-00056-9","article-title":"Genome-wide association studies","volume":"1","author":"Uffelmann","year":"2021","journal-title":"Nat. Rev. Methods Primers"},{"issue":"18","key":"10.1016\/j.fm.2026.105093_bib72","doi-asserted-by":"crossref","first-page":"5649","DOI":"10.1073\/pnas.1503141112","article-title":"Global trends in antimicrobial use in food animals","volume":"112","author":"Van Boeckel","year":"2015","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib73","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1186\/s13567-023-01141-5","article-title":"Using random forest to predict antimicrobial minimum inhibitory concentrations of nontyphoidal Salmonella in Taiwan","volume":"54","author":"Wang","year":"2023","journal-title":"Vet. Res."},{"issue":"7","key":"10.1016\/j.fm.2026.105093_bib74","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00092-20","article-title":"Epidemiological study on prevalence, serovar diversity, multidrug resistance, and CTX-M-Type extended-spectrum \u03b2-Lactamases of Salmonella spp. from patients with diarrhea, food of animal origin, and pets in several provinces of China","volume":"64","author":"Wang","year":"2020","journal-title":"Antimicrob. Agents Chemother."},{"issue":"7","key":"10.1016\/j.fm.2026.105093_bib75","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1089\/fpd.2016.2237","article-title":"Distribution and antimicrobial susceptibility of foodborne Salmonella serovars in eight provinces in China from 2007 to 2012 (Except 2009)","volume":"14","author":"Wang","year":"2017","journal-title":"Foodborne pathogens and disease"},{"key":"10.1016\/j.fm.2026.105093_bib76","series-title":"2024: Bacterial Pathogens of Public Health Importance to Guide Research, Development and Strategies to Prevent and Control Antimicrobial Resistance","year":"2024"},{"issue":"5","key":"10.1016\/j.fm.2026.105093_bib77","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijantimicag.2025.107575","article-title":"Genomic insights into nontyphoidal Salmonella: prediction of antimicrobial resistance with whole genome-based machine learning","volume":"66","author":"Woh","year":"2025","journal-title":"Int. J. Antimicrob. Agents"},{"issue":"5","key":"10.1016\/j.fm.2026.105093_bib78","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.04886-22","article-title":"Prevalence and molecular characterization of cefotaxime-resistant Salmonella strains recovered from retail meat samples in Shenzhen, China, during 2014-2017","volume":"11","author":"Yang","year":"2023","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.fm.2026.105093_bib79","doi-asserted-by":"crossref","DOI":"10.3389\/fgene.2023.1054032","article-title":"Using bacterial pan-genome-based feature selection approach to improve the prediction of minimum inhibitory concentration (MIC)","volume":"14","author":"Yang","year":"2023","journal-title":"Front. Genet."},{"key":"10.1016\/j.fm.2026.105093_bib80","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1016\/j.foodcont.2015.03.046","article-title":"Prevalence, enumeration, and characterization of Salmonella isolated from aquatic food products from retail markets in China","volume":"57","author":"Yang","year":"2015","journal-title":"Food Control"},{"issue":"2","key":"10.1016\/j.fm.2026.105093_bib81","doi-asserted-by":"crossref","first-page":"398","DOI":"10.1093\/jac\/dkm168","article-title":"Rapid and widespread dissemination of multidrug-resistant blaCMY-2 Salmonella Typhimurium in Mexico","volume":"60","author":"Zaidi","year":"2007","journal-title":"J. Antimicrob. Chemother."},{"issue":"1","key":"10.1016\/j.fm.2026.105093_bib82","doi-asserted-by":"crossref","first-page":"7490","DOI":"10.1038\/s41467-022-34970-7","article-title":"Dynamics of extended-spectrum cephalosporin resistance genes in Escherichia coli from Europe and North America","volume":"13","author":"Zamudio","year":"2022","journal-title":"Nat. Commun."},{"issue":"3","key":"10.1016\/j.fm.2026.105093_bib83","doi-asserted-by":"crossref","DOI":"10.1128\/msystems.01018-24","article-title":"Tracing the evolution: the rise of Salmonella Thompson co-resistant to clinically important antibiotics in China, 1997-2020","volume":"10","author":"Zhai","year":"2025","journal-title":"mSystems"},{"key":"10.1016\/j.fm.2026.105093_bib84","doi-asserted-by":"crossref","first-page":"2104","DOI":"10.3389\/fmicb.2018.02104","article-title":"Highly prevalent multidrug-resistant Salmonella from chicken and pork meat at retail markets in Guangdong, China","volume":"9","author":"Zhang","year":"2018","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.fm.2026.105093_bib85","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2024.110708","article-title":"Dissemination of IncC plasmids in Salmonella enterica serovar Thompson recovered from seafood and human diarrheic patients in China","volume":"417","author":"Zhang","year":"2024","journal-title":"Int. J. Food Microbiol."}],"container-title":["Food Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0740002026000572?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0740002026000572?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,21]],"date-time":"2026-10-21T02:17:00Z","timestamp":1792549020000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0740002026000572"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":83,"alternative-id":["S0740002026000572"],"URL":"https:\/\/doi.org\/10.1016\/j.fm.2026.105093","relation":{},"ISSN":["0740-0020"],"issn-type":[{"value":"0740-0020","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Global prevalence and distribution of bla-harboring Salmonella: A genome-wide association study of cephalosporin resistance mechanisms","name":"articletitle","label":"Article Title"},{"value":"Food Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.fm.2026.105093","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"105093"}}