{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,31]],"date-time":"2026-08-31T15:15:09Z","timestamp":1788189309028,"version":"build-2803163510"},"reference-count":73,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100004032","name":"Jilin University","doi-asserted-by":"publisher","award":["2025JBGS07"],"award-info":[{"award-number":["2025JBGS07"]}],"id":[{"id":"10.13039\/501100004032","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100011789","name":"Jilin Provincial Science and Technology Department","doi-asserted-by":"publisher","award":["2025JK-YA003"],"award-info":[{"award-number":["2025JK-YA003"]}],"id":[{"id":"10.13039\/501100011789","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["82373628"],"award-info":[{"award-number":["82373628"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Food Microbiology"],"published-print":{"date-parts":[[2027,1]]},"DOI":"10.1016\/j.fm.2026.105243","type":"journal-article","created":{"date-parts":[[2026,7,14]],"date-time":"2026-07-14T15:19:19Z","timestamp":1784042359000},"page":"105243","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Genomic diversity, antimicrobial resistance, and virulence profiles of Salmonella from retail pork under different supply modes in Jilin, China"],"prefix":"10.1016","volume":"141","author":[{"given":"Jingying","family":"Zheng","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jingyu","family":"Sun","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ben","family":"Shi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xuening","family":"Shi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jing","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yukun","family":"Ding","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yixin","family":"Jing","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiajia","family":"Ai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jingya","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wei","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Juan","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.fm.2026.105243_bib1","doi-asserted-by":"crossref","first-page":"2072","DOI":"10.1021\/acsinfecdis.3c00408","article-title":"Outer membrane proteins and efflux pumps mediated multi-drug resistance in salmonella: rising threat to antimicrobial therapy","volume":"9","author":"Akshay","year":"2023","journal-title":"ACS Infect. Dis."},{"key":"10.1016\/j.fm.2026.105243_bib2","doi-asserted-by":"crossref","DOI":"10.1080\/19490976.2023.2229937","article-title":"Better together-Salmonella biofilm-associated antibiotic resistance","volume":"15","author":"Aleksandrowicz","year":"2023","journal-title":"Gut Microbes"},{"key":"10.1016\/j.fm.2026.105243_bib3","article-title":"Salmonella in the environment: a review on ecology, antimicrobial resistance, seafood contaminations, and human health implications","volume":"13","author":"Billah","year":"2024","journal-title":"J. Hazard. Mater. Adv."},{"key":"10.1016\/j.fm.2026.105243_bib4","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2024.110785","article-title":"Phenotypic and genotypic characterization of antimicrobial resistance of non-typhoidal Salmonella from retail meat in California","volume":"421","author":"Bolkenov","year":"2024","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib5","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1038\/s41579-023-00926-x","article-title":"Plasmids, a molecular cornerstone of antimicrobial resistance in the one health era","volume":"22","author":"Casta\u00f1eda-Barba","year":"2024","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib6","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2021.109055","article-title":"Highly prevalent multidrug resistance and QRDR mutations in Salmonella isolated from chicken, pork and duck meat in Southern China, 2018\u20132019","volume":"340","author":"Chen","year":"2021","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib7","doi-asserted-by":"crossref","DOI":"10.1128\/msystems.01197-24","article-title":"Evolution and maintenance of a large multidrug-resistant plasmid in a Salmonella enterica Typhimurium host under differing antibiotic selection pressures","volume":"9","author":"Cheng","year":"2024","journal-title":"mSystems"},{"key":"10.1016\/j.fm.2026.105243_bib8","doi-asserted-by":"crossref","DOI":"10.1080\/21505594.2025.2504658","article-title":"Comparative genomics of Salmonella enterica serovars Paratyphi A, Typhi and Typhimurium reveals distinct profiles of their pangenome, mobile genetic elements, antimicrobial resistance and defense systems repertoire","volume":"16","author":"Coluzzi","year":"2025","journal-title":"Virulence"},{"key":"10.1016\/j.fm.2026.105243_bib9","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2021.109091","article-title":"Genomic investigation of antimicrobial resistance determinants and virulence factors in Salmonella enterica serovars isolated from contaminated food and human stool samples in Brazil","volume":"343","author":"De Melo","year":"2021","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib10","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.705230","article-title":"Emergence of IncHI2 plasmids with mobilized colistin resistance (mcr)-9 gene in ESBL-Producing, multidrug-resistant Salmonella Typhimurium and its monophasic variant ST34 from food-producing animals in Italy","volume":"12","author":"Diaconu","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib11","year":"2022","journal-title":"FAOSTAT"},{"key":"10.1016\/j.fm.2026.105243_bib12","doi-asserted-by":"crossref","first-page":"3943","DOI":"10.3390\/foods14223943","article-title":"Molecular evidence of clonal salmonella enteritidis persistence in poultry cold-chain environments under environmental stress","volume":"14","author":"Gazi","year":"2025","journal-title":"Foods"},{"key":"10.1016\/j.fm.2026.105243_bib13","doi-asserted-by":"crossref","first-page":"671","DOI":"10.3390\/antibiotics10060671","article-title":"Antimicrobials and food-related stresses as selective factors for antibiotic resistance along the farm to fork continuum","volume":"10","author":"Giacometti","year":"2021","journal-title":"Antibiotics"},{"key":"10.1016\/j.fm.2026.105243_bib14","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1038\/s41579-024-01124-z","article-title":"Antibiotic-recalcitrant Salmonella during infection","volume":"23","author":"Giorgio","year":"2025","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib15","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2020.109042","article-title":"Differences in resistance to different environmental stresses and non-thermal food preservation technologies among Salmonella enterica subsp. enterica strains","volume":"132","author":"Guill\u00e9n","year":"2020","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib16","doi-asserted-by":"crossref","first-page":"617","DOI":"10.3390\/foods10030617","article-title":"Impact of the Resistance Responses to Stress Conditions Encountered in Food and Food Processing Environments on the Virulence and Growth Fitness of Non-Typhoidal Salmonella e","volume":"10","author":"Guill\u00e9n","year":"2021","journal-title":"Foods"},{"key":"10.1016\/j.fm.2026.105243_bib17","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","article-title":"QUAST: quality assessment tool for genome assemblies","volume":"29","author":"Gurevich","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.fm.2026.105243_bib18","article-title":"Typhoidal Salmonella serovars: ecological opportunity and the evolution of a new pathovar","author":"Hiyoshi","year":"2018","journal-title":"FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Rev."},{"key":"10.1016\/j.fm.2026.105243_bib19","doi-asserted-by":"crossref","first-page":"1962","DOI":"10.3389\/fmicb.2018.01962","article-title":"Food-associated stress primes foodborne pathogens for the gastrointestinal phase of infection","volume":"9","author":"Horn","year":"2018","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib20","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1080\/21505594.2019.1682752","article-title":"H-NS is the major repressor of Salmonella Typhimurium Pef fimbriae expression","volume":"10","author":"Hurtado-Escobar","year":"2019","journal-title":"Virulence"},{"key":"10.1016\/j.fm.2026.105243_bib21","doi-asserted-by":"crossref","DOI":"10.1016\/j.onehlt.2025.100967","article-title":"Genomic and resistome analysis of Salmonella enterica isolates from retail markets in Yichun city, China","volume":"20","author":"Jiang","year":"2025","journal-title":"One Health"},{"key":"10.1016\/j.fm.2026.105243_bib22","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.835699","article-title":"Antimicrobial resistance profiles of non-typhoidal salmonella from retail meat products in California, 2018","volume":"13","author":"Lee","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib23","article-title":"Ensuring egg safety: salmonella survival, control, and virulence in the supply chain","volume":"24","author":"Li","year":"2025","journal-title":"Comp Rev Food Sci Food Safe"},{"key":"10.1016\/j.fm.2026.105243_bib24","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2025.111129","article-title":"The genomic characteristics of dominant Salmonella enterica serovars from retail pork in Sichuan province, China","volume":"434","author":"Li","year":"2025","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib25","doi-asserted-by":"crossref","first-page":"1645","DOI":"10.1093\/jac\/dkaa046","article-title":"Reorganization of mcr-1-bearing large MDR plasmids resolved by nanopore sequencing","volume":"75","author":"Li","year":"2020","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.fm.2026.105243_bib26","doi-asserted-by":"crossref","DOI":"10.1016\/j.envint.2021.106899","article-title":"Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs","volume":"158","author":"Li","year":"2022","journal-title":"Environ. Int."},{"key":"10.1016\/j.fm.2026.105243_bib27","doi-asserted-by":"crossref","DOI":"10.1016\/j.micres.2023.127387","article-title":"Insertion sequences mediate clinical ST34 monophasic Salmonella enterica serovar Typhimurium plasmid polymorphism","volume":"272","author":"Li","year":"2023","journal-title":"Microbiol. Res."},{"key":"10.1016\/j.fm.2026.105243_bib28","article-title":"Potential dissemination of IncHI2\/IncHI2A plasmids carrying mcr -9.4 complex transposon in chicken-derived Enterobacter hormaechei","volume":"14","author":"Liu","year":"2026","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.fm.2026.105243_bib29","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2021.110198","article-title":"Prevalence and genomic investigation of Salmonella isolates recovered from animal food-chain in Xinjiang, China","volume":"142","author":"Liu","year":"2021","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib30","doi-asserted-by":"crossref","first-page":"270","DOI":"10.3389\/fcimb.2019.00270","article-title":"Salmonella pathogenicity Island 1 (SPI-1) and its complex regulatory network","volume":"9","author":"Lou","year":"2019","journal-title":"Front. Cell. Infect. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib31","doi-asserted-by":"crossref","DOI":"10.1016\/j.micres.2024.128013","article-title":"Salmonella: infection mechanism and control strategies","volume":"292","author":"Lu","year":"2025","journal-title":"Microbiol. Res."},{"key":"10.1016\/j.fm.2026.105243_bib32","doi-asserted-by":"crossref","first-page":"1856.e7","DOI":"10.1016\/j.cmi.2021.04.020","article-title":"Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 \u2018superplasmids\u2019 in clinical carbapenem-resistant Enterobacterales","volume":"27","author":"Macesic","year":"2021","journal-title":"Clin. Microbiol. Infection"},{"key":"10.1016\/j.fm.2026.105243_bib33","doi-asserted-by":"crossref","first-page":"2933","DOI":"10.3390\/foods14172933","article-title":"Antimicrobial resistance of salmonella and characterization of two Mcr-1-Harboring isolates from pork products in Guangdong, China","volume":"14","author":"Mai","year":"2025","journal-title":"Foods"},{"key":"10.1016\/j.fm.2026.105243_bib34","doi-asserted-by":"crossref","DOI":"10.1016\/j.fm.2021.103823","article-title":"The changing microbiome of poultry meat; from farm to fridge","volume":"99","author":"Marmion","year":"2021","journal-title":"Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib35","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.01056-18","article-title":"New variant of multidrug-resistant Salmonella enterica Serovar Typhimurium associated with invasive disease in immunocompromised patients in Vietnam","volume":"9","author":"Mather","year":"2018","journal-title":"mBio"},{"key":"10.1016\/j.fm.2026.105243_bib36","doi-asserted-by":"crossref","DOI":"10.1177\/15353141261425153","article-title":"Do genes tell the whole story? Comparing genetic clues and wet-lab tests for antibiotic resistance in Salmonella","author":"Mayboca-Padilla","year":"2026","journal-title":"Foodborne Pathogens and Disease 15353141261425153"},{"key":"10.1016\/j.fm.2026.105243_bib37","series-title":"China Animal Husbandry and Veterinary Yearbook","year":"2001"},{"key":"10.1016\/j.fm.2026.105243_bib38","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2022.111955","article-title":"Overview of antimicrobial resistance and virulence factors in Salmonella spp. isolated in the last two decades from chicken in Brazil","volume":"162","author":"Morasi","year":"2022","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib39","doi-asserted-by":"crossref","first-page":"34","DOI":"10.1016\/j.eng.2022.05.006","article-title":"Genomic epidemiology of ST34 monophasic Salmonella enterica serovar Typhimurium from clinical patients from 2008 to 2017 in Henan, China","volume":"15","author":"Mu","year":"2022","journal-title":"Engineering"},{"key":"10.1016\/j.fm.2026.105243_bib40","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1038\/s44259-025-00159-3","article-title":"Identification of multidrug-resistant monophasic Salmonella Typhimurium ST34 and other NTS from animal-environmental origins in South Africa","volume":"3","author":"Ogundare","year":"2025","journal-title":"npj Antimicrob Resist"},{"key":"10.1016\/j.fm.2026.105243_bib41","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2024.114654","article-title":"Characterization of the prevalence of Salmonella in different retail chicken supply modes using genome-wide and machine-learning analyses","volume":"191","author":"Peng","year":"2024","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib42","doi-asserted-by":"crossref","first-page":"1116","DOI":"10.1038\/s41467-022-28750-6","article-title":"Antimicrobial resistance and population genomics of multidrug-resistant Escherichia coli in pig farms in mainland China","volume":"13","author":"Peng","year":"2022","journal-title":"Nat. Commun."},{"key":"10.1016\/j.fm.2026.105243_bib43","doi-asserted-by":"crossref","first-page":"853","DOI":"10.3390\/biology15110853","article-title":"Factors influencing Salmonella enterica contamination and multidrug resistance in pork available at modern retail stores in urban Southern Thailand","volume":"15","author":"Prasertsee","year":"2026","journal-title":"Biology"},{"key":"10.1016\/j.fm.2026.105243_bib44","doi-asserted-by":"crossref","DOI":"10.1002\/cpbi.102","article-title":"Using SPAdes De Novo Assembler","volume":"70","author":"Prjibelski","year":"2020","journal-title":"CP in Bioinformatics"},{"key":"10.1016\/j.fm.2026.105243_bib45","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2025.116349","article-title":"Whole genome sequencing of Salmonella serovars isolated from organic and non-organic whole broiler carcasses on the eastern shore of Maryland, USA","volume":"211","author":"Punchihewage-Don","year":"2025","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib46","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2026.119445","article-title":"Genomic characterization of multidrug-resistant monophasic Salmonella 4,[5],12:I:- ST34 circulating along the food chain of Central Italy","volume":"238","author":"Riaz","year":"2026","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib47","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.fm.2026.105243_bib48","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2021.109473","article-title":"Prevalence, serovar distribution, and antibiotic resistance of Salmonella spp. isolated from pork in China: a systematic review and meta-analysis","volume":"361","author":"Shen","year":"2022","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib49","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2023.110305","article-title":"Prevalence, antibiotic susceptibility and genomic analysis of Salmonella from retail meats in Shaanxi, China","volume":"403","author":"Sheng","year":"2023","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib50","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2026.119421","article-title":"Prevalence, plasmid transmission, and chromosomal integration of blaCTX-M genes in Salmonella isolated from retail chicken and pork meats in China","volume":"238","author":"Sheng","year":"2026","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib51","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2024.115299","article-title":"Niche-specific evolution and gene exchange of Salmonella in retail pork and chicken","volume":"197","author":"Sheng","year":"2024","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib52","doi-asserted-by":"crossref","first-page":"752","DOI":"10.1016\/j.tim.2025.02.007","article-title":"Salmonella pathogenicity islands in the genomic era","volume":"33","author":"Sia","year":"2025","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib53","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1128\/CMR.5.4.387","article-title":"Bacterial resistance to tetracycline: mechanisms, transfer, and clinical significance","volume":"5","author":"Speer","year":"1992","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.fm.2026.105243_bib54","doi-asserted-by":"crossref","DOI":"10.1126\/science.aaw1944","article-title":"Global trends in antimicrobial resistance in animals in low- and middle-income countries","volume":"365","author":"Van Boeckel","year":"2019","journal-title":"Science"},{"key":"10.1016\/j.fm.2026.105243_bib55","doi-asserted-by":"crossref","first-page":"300","DOI":"10.1016\/j.meatsci.2018.06.022","article-title":"Meat packaging, preservation, and marketing implications: consumer preferences in an emerging economy","volume":"145","author":"Wang","year":"2018","journal-title":"Meat Sci."},{"key":"10.1016\/j.fm.2026.105243_bib56","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2021.109515","article-title":"Prevalence, antimicrobial resistance, and genotype diversity of Salmonella isolates recovered from retail meat in Hebei Province, China","volume":"364","author":"Wang","year":"2022","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib57","series-title":"Salmonella (non-typhoidal)","year":"2018"},{"key":"10.1016\/j.fm.2026.105243_bib58","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: resolving bacterial genome assemblies from short and long sequencing reads","volume":"13","author":"Wick","year":"2017","journal-title":"PLoS Comput. Biol."},{"key":"10.1016\/j.fm.2026.105243_bib59","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2025.117918","article-title":"Genomic epidemiology and antimicrobial resistance of nontyphoidal Salmonella in retail meats in Hong Kong: a comprehensive surveillance study using whole-genome sequencing","volume":"225","author":"Wong","year":"2026","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib60","doi-asserted-by":"crossref","first-page":"806","DOI":"10.3390\/land14040806","article-title":"Spatiotemporal coupling evolution characteristics and driving mechanisms of corn cultivation and pig farming in China","volume":"14","author":"Xiong","year":"2025","journal-title":"Land"},{"key":"10.1016\/j.fm.2026.105243_bib61","article-title":"Genomic characterization of Salmonella uzaramo for human invasive infection","volume":"6","author":"Xu","year":"2020","journal-title":"Microb. Genom."},{"key":"10.1016\/j.fm.2026.105243_bib62","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2020.108790","article-title":"Prevalence and antimicrobial resistance of retail-meat-borne Salmonella in southern China during the years 2009\u20132016: the diversity of contamination and the resistance evolution of multidrug-resistant isolates","volume":"333","author":"Xu","year":"2020","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib63","doi-asserted-by":"crossref","DOI":"10.1016\/j.envint.2023.108008","article-title":"Potential reduction of greenhouse gas emissions from pig production in China on the basis of households' pork consumption","volume":"177","author":"Yan","year":"2023","journal-title":"Environ. Int."},{"key":"10.1016\/j.fm.2026.105243_bib64","doi-asserted-by":"crossref","first-page":"894","DOI":"10.4315\/0362-028X.JFP-13-439","article-title":"Counts, serotypes, and antimicrobial resistance of salmonella isolates on retail raw poultry in the people's Republic of China","volume":"77","author":"Yang","year":"2014","journal-title":"J. Food Protect."},{"key":"10.1016\/j.fm.2026.105243_bib65","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.fm.2014.02.003","article-title":"Characterization of extended-spectrum beta-lactamases-producing Salmonella strains isolated from retail foods in Shaanxi and Henan Province, China","volume":"42","author":"Yang","year":"2014","journal-title":"Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib66","doi-asserted-by":"crossref","DOI":"10.1016\/j.fm.2026.105093","article-title":"Global prevalence and distribution of bla-harboring Salmonella: a genome-wide association study of cephalosporin resistance mechanisms","volume":"138","author":"Yang","year":"2026","journal-title":"Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib67","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2019.136385","article-title":"Prevalence, abundance, serovars and antimicrobial resistance of Salmonella isolated from retail raw poultry meat in China","volume":"713","author":"Yang","year":"2020","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.fm.2026.105243_bib68","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2024.111027","article-title":"Characterization of novel mutations involved in the development of resistance to colistin in Salmonella isolates from retail pork in Shanghai, China","volume":"430","author":"Zhan","year":"2025","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib69","article-title":"Highly prevalent multidrug-resistant salmonella from chicken and pork meat at retail markets in Guangdong, China","volume":"9","author":"Zhang","year":"2018","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib70","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.01746-19","article-title":"SeqSero2: rapid and improved salmonella serotype determination using whole-genome sequencing data","volume":"85","author":"Zhang","year":"2019","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib71","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2026.111672","article-title":"Health risk and disease burden of pork-derived nontyphoidal Salmonella in Chinese households: a quantitative microbiological risk assessment","volume":"451","author":"Zhang","year":"2026","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.fm.2026.105243_bib72","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2026.119136","article-title":"Regulatory roles of rpoS and rpoE on the response profiles of Salmonella enterica serovar Typhimurium to acid and osmosis sequential cross-stress treatment","volume":"235","author":"Zhao","year":"2026","journal-title":"Food Res. Int."},{"key":"10.1016\/j.fm.2026.105243_bib73","doi-asserted-by":"crossref","first-page":"1395","DOI":"10.1101\/gr.232397.117","article-title":"GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens","volume":"28","author":"Zhou","year":"2018","journal-title":"Genome Res."}],"container-title":["Food Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0740002026002078?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0740002026002078?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,8,31]],"date-time":"2026-08-31T14:26:09Z","timestamp":1788186369000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0740002026002078"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2027,1]]},"references-count":73,"alternative-id":["S0740002026002078"],"URL":"https:\/\/doi.org\/10.1016\/j.fm.2026.105243","relation":{},"ISSN":["0740-0020"],"issn-type":[{"value":"0740-0020","type":"print"}],"subject":[],"published":{"date-parts":[[2027,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genomic diversity, antimicrobial resistance, and virulence profiles of Salmonella from retail pork under different supply modes in Jilin, China","name":"articletitle","label":"Article Title"},{"value":"Food Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.fm.2026.105243","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"105243"}}