{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,26]],"date-time":"2026-10-26T21:33:49Z","timestamp":1793050429028,"version":"4.5.0"},"reference-count":32,"publisher":"Elsevier BV","issue":"6","license":[{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,6,30]],"date-time":"2026-06-30T00:00:00Z","timestamp":1782777600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004586","name":"Carlos Chagas Filho Foundation for Research Support of Rio de Janeiro State","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004586","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"National Council for Scientific and Technological Development","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002322","name":"Coordination for the improvement of Higher Education Personnel","doi-asserted-by":"publisher","award":["Finance Code 001"],"award-info":[{"award-number":["Finance Code 001"]}],"id":[{"id":"10.13039\/501100002322","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Fungal Biology"],"published-print":{"date-parts":[[2026,10]]},"DOI":"10.1016\/j.funbio.2026.101807","type":"journal-article","created":{"date-parts":[[2026,6,30]],"date-time":"2026-06-30T20:39:55Z","timestamp":1782851995000},"page":"101807","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["ITS-based metabarcoding of broiler and layer chicken litter: Linking fungal diversity to environmental and One Health risks"],"prefix":"10.1016","volume":"130","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2821-4978","authenticated-orcid":false,"given":"Dario","family":"Corr\u00eaa-Junior","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luana","family":"Lessa R. Santos","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4584-1888","authenticated-orcid":false,"given":"Ana C.","family":"Bahia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8904-3968","authenticated-orcid":false,"given":"Cl\u00e1udio","family":"Ernesto Taveira Parente","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susana","family":"Frases","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.funbio.2026.101807_bib1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s13205-015-0323-4","article-title":"Cladosporium cladosporioides from the perspectives of medical and biotechnological approaches","volume":"6","author":"AlMatar","year":"2016","journal-title":"3 Biotech"},{"key":"10.1016\/j.funbio.2026.101807_bib2","first-page":"1","article-title":"Litter management in poultry","volume":"9","author":"Anupoju","year":"2021","journal-title":"Poultry, Fish. Wildlife Sci."},{"key":"10.1016\/j.funbio.2026.101807_bib3","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2180-10-189","article-title":"ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases","volume":"10","author":"Bellemain","year":"2010","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.funbio.2026.101807_bib4","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/j.riam.2020.03.004","article-title":"Aspergillosis, poultry farming and antifungal resistance","volume":"38","author":"Caba\u00f1es","year":"2021","journal-title":"Rev. Iberoam. Micol."},{"key":"10.1016\/j.funbio.2026.101807_bib5","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3390\/agriculture4010001","article-title":"Microbiological safety of chicken litter or chicken litter-based organic fertilizers: a review","volume":"4","author":"Chen","year":"2014","journal-title":"Agriculture"},{"key":"10.1016\/j.funbio.2026.101807_bib6","article-title":"New insights on environmental occurrence of pathogenic fungi based on metagenomic data from Brazilian cerrado biome","volume":"65","author":"de F\u00e1tima Costa","year":"2022","journal-title":"Braz. Arch. Biol. Technol."},{"key":"10.1016\/j.funbio.2026.101807_bib7","article-title":"Metabolic and phenotypic plasticity may contribute for the higher virulence of Trichosporon asahii over other Trichosporonaceae members","author":"de Andrade","year":"2022","journal-title":"Mycoses"},{"key":"10.1016\/j.funbio.2026.101807_bib8","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.170772","article-title":"Metagenomic insights into the impact of litter from poultry Concentrated Animal Feeding Operations (CAFOs) to adjacent soil and water microbial communities","volume":"920","author":"Dur\u00e1n-Viseras","year":"2024","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.funbio.2026.101807_bib9","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2022.160014","article-title":"Intensive poultry farming: a review of the impact on the environment and human health","volume":"858","author":"Gr\u017eini\u0107","year":"2023","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.funbio.2026.101807_bib10","series-title":"Reference Module in Food Science","first-page":"56","article-title":"Poultry waste management-manure","author":"Hamidu","year":"2022"},{"key":"10.1016\/j.funbio.2026.101807_bib11","doi-asserted-by":"crossref","first-page":"3961","DOI":"10.15376\/biores.18.2.3961-3977","article-title":"Poultry litter physiochemical characterization based on production conditions for circular systems","volume":"18","author":"Katuwal","year":"2023","journal-title":"Bioresources"},{"key":"10.1016\/j.funbio.2026.101807_bib12","doi-asserted-by":"crossref","first-page":"640","DOI":"10.18006\/2023.11(4).640.649","article-title":"Assessment of bacterial diversity in the chicken litter: a potent risk to environmental health","volume":"11","author":"Kumar","year":"2023","journal-title":"J. Exp. Biol. Agric. Sci."},{"key":"10.1016\/j.funbio.2026.101807_bib13","doi-asserted-by":"crossref","first-page":"3521","DOI":"10.3390\/ijerph16193521","article-title":"How safe is chicken litter for land application as an organic fertilizer?: a review","volume":"16","author":"Kyakuwaire","year":"2019","journal-title":"Int. J. Environ. Res. Publ. Health"},{"key":"10.1016\/j.funbio.2026.101807_bib14","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2024.125177","article-title":"Cross-environmental cycling of antimicrobial resistance in agricultural areas fertilized with poultry litter: a one health approach","volume":"363","author":"Lopes","year":"2024","journal-title":"Environ. Pollut."},{"key":"10.1016\/j.funbio.2026.101807_bib15","doi-asserted-by":"crossref","first-page":"1650","DOI":"10.3390\/antibiotics11111650","article-title":"Irrigation ponds as sources of antimicrobial-resistant bacteria in agricultural areas with intensive use of poultry litter","volume":"11","author":"Lopes","year":"2022","journal-title":"Antibiotics"},{"key":"10.1016\/j.funbio.2026.101807_bib16","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1016\/j.energy.2017.03.103","article-title":"Greenhouse gas mitigation using poultry litter management techniques in Bangladesh","volume":"127","author":"Mainali","year":"2017","journal-title":"Energy"},{"issue":"4","key":"10.1016\/j.funbio.2026.101807_bib17","doi-asserted-by":"crossref","first-page":"808","DOI":"10.3390\/agronomy15040808","article-title":"Composting of olive mill wastewater sludge using a combination of multiple strategies: assessment of improvement in biodegradability, GHG emissions, and characteristics of the end product","volume":"15","author":"Mira-Urios","year":"2025","journal-title":"Agronomy"},{"key":"10.1016\/j.funbio.2026.101807_bib18","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1080\/00275514.2019.1585161","article-title":"In vitro virulence determinants, comparative pathogenicity of Diutina (Candida) mesorugosa clinical isolates and literature review of the D. rugosa complex","volume":"111","author":"Montoya","year":"2019","journal-title":"Mycologia"},{"key":"10.1016\/j.funbio.2026.101807_bib19","doi-asserted-by":"crossref","DOI":"10.3390\/applmicrobiol5010026","article-title":"Unlocking the hidden microbiome of food: the role of metagenomics in analyzing fresh produce, poultry, and meat","volume":"5","author":"Mu\u00f1oz-Martinez","year":"2025","journal-title":"Appl. Microbiol."},{"key":"10.1016\/j.funbio.2026.101807_bib20","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1038\/s41579-018-0116-y","article-title":"Mycobiome diversity: high-throughput sequencing and identification of fungi","volume":"17","author":"Nilsson","year":"2019","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.funbio.2026.101807_bib21","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1016\/j.chemosphere.2018.11.184","article-title":"Fluoroquinolones in agricultural soils: Multi-temporal variation and risks in Rio de Janeiro upland region","volume":"219","author":"Parente","year":"2019","journal-title":"Chemosphere"},{"key":"10.1016\/j.funbio.2026.101807_bib22","doi-asserted-by":"crossref","first-page":"1087","DOI":"10.1080\/03601234.2020.1816794","article-title":"Fluoroquinolones and trace elements in poultry litter: estimation of environmental load based on nitrogen requirement for crops","volume":"55","author":"Parente","year":"2020","journal-title":"J. Environ. Sci. Health B"},{"key":"10.1016\/j.funbio.2026.101807_bib23","doi-asserted-by":"crossref","first-page":"734","DOI":"10.1111\/j.1469-0691.2008.02024.x","article-title":"Alternaria infections: laboratory diagnosis and relevant clinical features","volume":"14","author":"Pastor","year":"2008","journal-title":"Clin. Microbiol. Infection"},{"key":"10.1016\/j.funbio.2026.101807_bib24","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3767\/003158516X688027","article-title":"Redefining Microascus, Scopulariopsis and allied genera","volume":"36","author":"Sandoval-Denis","year":"2016","journal-title":"Persoonia"},{"key":"10.1016\/j.funbio.2026.101807_bib25","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1111\/j.1439-0507.2008.01656.x","article-title":"Antagonism of Microsporum species by soil fungi","volume":"53","author":"Singh","year":"2010","journal-title":"Mycoses"},{"key":"10.1016\/j.funbio.2026.101807_bib26","doi-asserted-by":"crossref","DOI":"10.3390\/ijerph13020192","article-title":"Evaluation of microbiological and chemical contaminants in poultry farms","volume":"13","author":"Sk\u00f3ra","year":"2016","journal-title":"Int. J. Environ. Res. Publ. Health"},{"issue":"10","key":"10.1016\/j.funbio.2026.101807_bib27","doi-asserted-by":"crossref","first-page":"2769","DOI":"10.1111\/mec.16460","article-title":"Best practices in metabarcoding of fungi: From experimental design to results","volume":"31","author":"Tedersoo","year":"2022","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.funbio.2026.101807_bib28","doi-asserted-by":"crossref","first-page":"122267","DOI":"10.1016\/j.biortech.2019.122267","article-title":"Assessment of the diversity and abundance of the total and active fungal population and its correlation with humification during two-phase olive mill waste (\u2018\u2018alperujo\u201d) composting","volume":"295","author":"Tortosa","year":"2020","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.funbio.2026.101807_bib29","doi-asserted-by":"crossref","DOI":"10.3390\/ijerph192013488","article-title":"Microbial contamination in the coffee industry: an occupational menace besides a food safety concern?","volume":"19","author":"Viegas","year":"2022","journal-title":"Int. J. Environ. Res. Publ. Health"},{"issue":"3","key":"10.1016\/j.funbio.2026.101807_bib30","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1002\/mlf2.12036","article-title":"Assessing global fungal threats to humans","volume":"1","author":"Xu","year":"2022","journal-title":"mLife"},{"key":"10.1016\/j.funbio.2026.101807_bib31","doi-asserted-by":"crossref","first-page":"24","DOI":"10.54097\/j4nzvx66","article-title":"Metagenomics: advances in environmental microbiology, human health, and agriculture","volume":"6","author":"Yu","year":"2024","journal-title":"Int. J. Biol. Life Sci."},{"key":"10.1016\/j.funbio.2026.101807_bib32","doi-asserted-by":"crossref","DOI":"10.3390\/toxins14070445","article-title":"Climate change and effects on molds and mycotoxins","volume":"14","author":"Zingales","year":"2022","journal-title":"Toxins (Basel)."}],"container-title":["Fungal Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1878614626000929?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1878614626000929?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,26]],"date-time":"2026-10-26T20:38:16Z","timestamp":1793047096000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1878614626000929"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,10]]},"references-count":32,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["S1878614626000929"],"URL":"https:\/\/doi.org\/10.1016\/j.funbio.2026.101807","relation":{},"ISSN":["1878-6146"],"issn-type":[{"value":"1878-6146","type":"print"}],"subject":[],"published":{"date-parts":[[2026,10]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"ITS-based metabarcoding of broiler and layer chicken litter: Linking fungal diversity to environmental and One Health risks","name":"articletitle","label":"Article Title"},{"value":"Fungal Biology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.funbio.2026.101807","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Authors. Published by Elsevier Ltd on behalf of British Mycological Society.","name":"copyright","label":"Copyright"}],"article-number":"101807"}}