{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,7]],"date-time":"2026-11-07T04:55:59Z","timestamp":1794027359006,"version":"4.8.0"},"reference-count":52,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2019,9,1]],"date-time":"2019-09-01T00:00:00Z","timestamp":1567296000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2019,9,1]],"date-time":"2019-09-01T00:00:00Z","timestamp":1567296000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"funder":[{"DOI":"10.13039\/501100007087","name":"University of Isfahan","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100007087","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["International Journal of Food Microbiology"],"published-print":{"date-parts":[[2019,9]]},"DOI":"10.1016\/j.ijfoodmicro.2019.108252","type":"journal-article","created":{"date-parts":[[2019,6,13]],"date-time":"2019-06-13T02:34:42Z","timestamp":1560393282000},"page":"108252","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":43,"special_numbering":"C","title":["Prevalence and molecular characterization of multidrug-resistant Shigella species of food origins and their inactivation by specific lytic bacteriophages"],"prefix":"10.1016","volume":"305","author":[{"given":"Khashayar","family":"Shahin","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2716-4692","authenticated-orcid":false,"given":"Majid","family":"Bouzari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ran","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mahsa","family":"Yazdi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0005","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1016\/j.ijfoodmicro.2013.10.014","article-title":"Isolation and molecular characterization of Salmonella enterica, Escherichia coli O157: H7 and Shigella spp. from meat and dairy products in Egypt","volume":"168","author":"Ahmed","year":"2014","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0010","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1016\/j.ijfoodmicro.2014.10.014","article-title":"Molecular analysis of multidrug resistance in Shiga toxin-producing Escherichia coli O157: H7 isolated from meat and dairy products","volume":"193","author":"Ahmed","year":"2015","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0015","doi-asserted-by":"crossref","first-page":"78","DOI":"10.1016\/j.ijfoodmicro.2014.11.013","article-title":"Molecular characterization of multidrug-resistant Shigella spp. of food origin","volume":"194","author":"Ahmed","year":"2015","journal-title":"Int. J. Food Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0020","doi-asserted-by":"crossref","first-page":"1685","DOI":"10.1099\/jmm.0.46725-0","article-title":"Genetic characterization of multidrug resistance in Shigella spp. from Japan","volume":"55","author":"Ahmed","year":"2006","journal-title":"J. Med. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0025","doi-asserted-by":"crossref","first-page":"260","DOI":"10.1016\/j.meegid.2015.06.024","article-title":"Clonal dissemination of a single Shigella sonnei strain among Iranian children during fall 2012 in Tehran, IR Iran","volume":"34","author":"Alizadeh-Hesar","year":"2015","journal-title":"Infect. Genet. Evol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0030","doi-asserted-by":"crossref","first-page":"933","DOI":"10.1128\/CMR.14.4.933-951.2001","article-title":"Extended-spectrum \u03b2-lactamases in the 21st century: characterization, epidemiology, and detection of this important resistance threat","volume":"14","author":"Bradford","year":"2001","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0035","series-title":"Bergey's Manual of Determinative Bacteriology","author":"Buchanan","year":"1974"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0045","doi-asserted-by":"crossref","first-page":"1059","DOI":"10.1016\/j.foodcont.2007.11.004","article-title":"Shigella and Salmonella contamination in various foodstuffs in Turkey","volume":"19","author":"Cetinkaya","year":"2008","journal-title":"Food Control"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0050","doi-asserted-by":"crossref","first-page":"769","DOI":"10.2217\/fmb.13.47","article-title":"Phage cocktails and the future of phage therapy","volume":"8","author":"Chan","year":"2013","journal-title":"Future Microbiol"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0055","series-title":"Performance Standards for Antimicrobial Susceptibility Testing; Twenty-Fifth Informational Supplement","volume":"vol. 31","author":"CLSI","year":"2015"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0060","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1093\/oxfordjournals.aje.a115084","article-title":"A shigellosis outbreak traced to commercially distributed shredded lettuce","volume":"128","author":"Davis","year":"1988","journal-title":"Am. J. Epidemiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0065","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1089\/fpd.2012.1250","article-title":"Genetic diversity of Shigella spp. and their integron content","volume":"10","author":"Eftekhari","year":"2013","journal-title":"Foodborne Pathog. Dis."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0070","doi-asserted-by":"crossref","first-page":"2879","DOI":"10.1128\/JCM.00310-06","article-title":"Characterization of Shigella strains in Iran by plasmid profile analysis and PCR amplification of ipa genes","volume":"44","author":"Farshad","year":"2006","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0075","doi-asserted-by":"crossref","first-page":"26","DOI":"10.3201\/eid0101.950105","article-title":"An outbreak of Shigella sonnei infection associated with consumption of iceberg lettuce","volume":"1","author":"Frost","year":"1995","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0080","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1080\/09603120701219204","article-title":"Prevalence of enterotoxigenic Staphylococcus aureus and Shigella spp. in some raw street vended Indian foods","volume":"17","author":"Ghosh","year":"2007","journal-title":"Int. J. Environ. Health Res."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0085","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/j.ijantimicag.2012.02.005","article-title":"Comparison of the prevalence and changing resistance to nalidixic acid and ciprofloxacin of Shigella between Europe\u2013America and Asia\u2013Africa from 1998 to 2009","volume":"40","author":"Gu","year":"2012","journal-title":"Int. J. Antimicrob. Agents"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0090","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1007\/s00284-010-9659-5","article-title":"Isolation and characterization of bacteriophages infecting Staphylococcus epidermidis","volume":"61","author":"Guti\u00e9rrez","year":"2010","journal-title":"Curr. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0095","doi-asserted-by":"crossref","first-page":"1023","DOI":"10.1128\/JCM.41.3.1023-1032.2003","article-title":"Epidemiology of tetracycline resistance determinants in Shigella spp. and enteroinvasive Escherichia coli: characterization and dissemination of tet (A)-1","volume":"41","author":"Hartman","year":"2003","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0100","doi-asserted-by":"crossref","first-page":"3208","DOI":"10.1001\/jama.1992.03490220052027","article-title":"An international foodborne outbreak of shigellosis associated with a commercial airline","volume":"268","author":"Hedberg","year":"1992","journal-title":"JAMA"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0105","doi-asserted-by":"crossref","first-page":"1423","DOI":"10.1056\/NEJM199111143252006","article-title":"Diarrheal disease during operation desert shield","volume":"325","author":"Hyams","year":"1991","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0110","doi-asserted-by":"crossref","first-page":"e56","DOI":"10.1155\/2009\/341275","article-title":"Prevalence and antimicrobial resistance of diarrheagenic Escherichia coli and Shigella species associated with acute diarrhea in Tehran, Iran","volume":"20","author":"Jafari","year":"2009","journal-title":"Can. J. Infect. Dis. Med. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0115","doi-asserted-by":"crossref","first-page":"979","DOI":"10.1016\/j.resmic.2013.08.007","article-title":"Characterization and complete genome sequence of the Shigella bacteriophage pSf-1","volume":"164","author":"Jun","year":"2013","journal-title":"Res. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0120","first-page":"235","article-title":"Isolation and comparative genomic analysis of T1-like Shigella bacteriophage pSf-2","volume":"72","author":"Jun","year":"2016","journal-title":"Curr. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0125","doi-asserted-by":"crossref","first-page":"609","DOI":"10.1128\/jcm.33.3.609-614.1995","article-title":"Outbreak of Shigella sonnei infection traced to imported iceberg lettuce","volume":"33","author":"Kapperud","year":"1995","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0130","first-page":"1","article-title":"Bacteriophage biocontrol of foodborne pathogens","volume":"53","author":"Kazi","year":"2015","journal-title":"J. Food Sci. Technol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0135","article-title":"Detection and characterization of a novel lytic bacteriophage (vB-KpneM-Isf48) against Klebsiella pneumoniae isolates from infected wounds carrying antibiotic-resistance genes (TEM, SHV, and CTX-M)","volume":"19","author":"Komijani","year":"2017","journal-title":"Iran Red Crescent Med J"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0145","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1007\/978-1-60327-164-6_7","article-title":"Enumeration of bacteriophages by double agar overlay plaque assay","volume":"501","author":"Kropinski","year":"2009","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0150","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1007\/s00508-008-1141-7","article-title":"A food-borne outbreak of Shigella sonnei gastroenteritis, Austria, 2008","volume":"121","author":"Kuo","year":"2009","journal-title":"Wien. Klin. Wochenschr."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0155","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1093\/oxfordjournals.aje.a116103","article-title":"An outbreak of shigellosis aboard a cruise ship caused by a multiple-antibiotic-resistant strain of Shigella flexneri","volume":"134","author":"Lew","year":"1991","journal-title":"Am. J. Epidemiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0160","series-title":"Laboratory Protocol: Biochemical Identification of Salmonella and Shigella Using an Abbreviated Panel of Tests. WHO Global Foodborne Infections Network, Geneva, Switzerland","author":"Mikoleit","year":"2010"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0165","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0127606","article-title":"Isolation of phages for phage therapy: a comparison of spot tests and efficiency of plating analyses for determination of host range and efficacy","volume":"10","author":"Mirzaei","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0175","first-page":"458","article-title":"Qnr prevalence in extended spectrum beta-lactamases (ESBLs) and none-ESBLs producing Escherichia coli isolated from urinary tract infections in central of Iran","volume":"14","author":"Pakzad","year":"2011","journal-title":"Iran. J. Basic. Med. Sci."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0180","doi-asserted-by":"crossref","first-page":"288","DOI":"10.1093\/jac\/dkl228","article-title":"Molecular characteristics of class 1 and class 2 integrons and their relationships to antibiotic resistance in clinical isolates of Shigella sonnei and Shigella flexneri","volume":"58","author":"Pan","year":"2006","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0190","unstructured":"Perilla, M., Ajello, G., Bopp, C., Elliott, J., Facklam, R., 2003. Manual for the laboratory identification and antimicrobial susceptibility testing of bacterial pathogens of public health importance in the developing world. WHO\/CDS\/CSR\/RMD\/2003.6. , 121\u2013141."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0195","first-page":"1","article-title":"Changing prevalence and antibiotic susceptibility patterns of different Shigella species in Tehran, Iran","volume":"3","author":"Rahbar","year":"2007","journal-title":"Internet J Microbiol"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0200","doi-asserted-by":"crossref","first-page":"577","DOI":"10.1017\/S0950268807009351","article-title":"Part II. Analysis of data gaps pertaining to Shigella infections in low and medium human development index countries, 1984\u20132005","volume":"136","author":"Ram","year":"2008","journal-title":"Epidemiol. Infect."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0205","first-page":"426","article-title":"Increased isolation and characterization of Shigella sonnei obtained from hospitalized children in Tehran","volume":"4","author":"Ranjbar","year":"2008","journal-title":"Iran. J. Health Popul. Nutr."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0210","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1016\/j.jgar.2016.01.010","article-title":"Molecular characterisation of quinolone-resistant Shigella strains isolated in Tehran","volume":"5","author":"Ranjbar","year":"2016","journal-title":"Iran. J. Glob. Antimicrob. Re."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0215","series-title":"Molecular Cloning: A Laboratory Manual","author":"Sambrook","year":"2001"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0220","doi-asserted-by":"crossref","DOI":"10.5812\/jjm.19184v2","article-title":"Dissemination of extended-spectrum \u03b2-lactamases and quinolone resistance genes among clinical isolates of Uropathogenic Escherichia coli in children","volume":"8","author":"Sedighi","year":"2015","journal-title":"Jundishapur. J. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0225","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1007\/s13197-017-2964-2","article-title":"Bacteriophage application for biocontrolling Shigella flexneri in contaminated foods","volume":"55","author":"Shahin","year":"2018","journal-title":"J. Food Sci. Technol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0230","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1099\/jmm.0.000683","article-title":"Isolation, characterization and genomic analysis of a novel lytic bacteriophage vB_SsoS-ISF002 infecting Shigella sonnei and Shigella flexneri","volume":"67","author":"Shahin","year":"2018","journal-title":"J. Med. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0235","doi-asserted-by":"crossref","first-page":"S458","DOI":"10.1093\/cid\/cis230","article-title":"Antimicrobial susceptibility patterns of Shigella isolates in foodborne diseases active surveillance network (foodnet) sites, 2000\u20132010","volume":"54","author":"Shiferaw","year":"2012","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0240","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0175256","article-title":"Bacteriophage preparation lytic for Shigella significantly reduces Shigella sonnei contamination in various foods","volume":"12","author":"Soffer","year":"2017","journal-title":"Plo S one"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0245","doi-asserted-by":"crossref","first-page":"286","DOI":"10.1016\/j.anaerobe.2011.04.004","article-title":"Do leafy green vegetables and their ready-to-eat [RTE] salads carry a risk of foodborne pathogens?","volume":"17","author":"Taban","year":"2011","journal-title":"Anaerobe"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0250","doi-asserted-by":"crossref","first-page":"1128","DOI":"10.1093\/jac\/dks023","article-title":"Antimicrobial-resistant Shigella infections from Iran: an overlooked problem?","volume":"67","author":"Tajbakhsh","year":"2012","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0255","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0082601","article-title":"Changing trends in the prevalence of Shigella species: emergence of multi-drug resistant Shigella sonnei biotype g in Bangladesh","volume":"8","author":"Ud-Din","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0260","doi-asserted-by":"crossref","first-page":"1323","DOI":"10.1111\/j.1365-2672.2011.04989.x","article-title":"Isolation and characterization of lytic bacteriophages against enterohaemorrhagic Escherichia coli","volume":"110","author":"Viazis","year":"2011","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0265","doi-asserted-by":"crossref","first-page":"551","DOI":"10.1080\/10408390500295458","article-title":"Shigella as a foodborne pathogen and current methods for detection in food","volume":"46","author":"Warren","year":"2006","journal-title":"Crit. Rev. Food Sci. Nutr."},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0270","first-page":"94","article-title":"Shigellosis: disease burden","volume":"80","author":"WHO","year":"2005","journal-title":"epidemiology and case management. Wkly. Epidemiol. Rec"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0275","series-title":"Antimicrobial resistance: global report on surveillance 2014","author":"WHO","year":"2014"},{"key":"10.1016\/j.ijfoodmicro.2019.108252_bb0280","first-page":"81","article-title":"Shigella: a highly virulent and elusive pathogen","volume":"1","author":"Zaidi","year":"2014","journal-title":"Curr. Trop. Med. Rep."}],"container-title":["International Journal of Food Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0168160519301722?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0168160519301722?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,29]],"date-time":"2025-09-29T12:17:10Z","timestamp":1759148230000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0168160519301722"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,9]]},"references-count":52,"alternative-id":["S0168160519301722"],"URL":"https:\/\/doi.org\/10.1016\/j.ijfoodmicro.2019.108252","relation":{},"ISSN":["0168-1605"],"issn-type":[{"value":"0168-1605","type":"print"}],"subject":[],"published":{"date-parts":[[2019,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Prevalence and molecular characterization of multidrug-resistant Shigella species of food origins and their inactivation by specific lytic bacteriophages","name":"articletitle","label":"Article Title"},{"value":"International Journal of Food Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ijfoodmicro.2019.108252","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2019 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"108252"}}