{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,2]],"date-time":"2026-10-02T03:02:20Z","timestamp":1790910140043,"version":"4.1.0"},"reference-count":46,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,5,1]],"date-time":"2025-05-01T00:00:00Z","timestamp":1746057600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,5,1]],"date-time":"2025-05-01T00:00:00Z","timestamp":1746057600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,4,14]],"date-time":"2025-04-14T00:00:00Z","timestamp":1744588800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000865","name":"Bill and Melinda Gates Foundation","doi-asserted-by":"publisher","award":["INV-041900"],"award-info":[{"award-number":["INV-041900"]}],"id":[{"id":"10.13039\/100000865","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["clinicalkey.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["International Journal of Hygiene and Environmental Health"],"published-print":{"date-parts":[[2025,5]]},"DOI":"10.1016\/j.ijheh.2025.114572","type":"journal-article","created":{"date-parts":[[2025,4,1]],"date-time":"2025-04-01T15:32:12Z","timestamp":1743521532000},"page":"114572","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":5,"special_numbering":"C","title":["Environmental surveillance for Salmonella Typhi to detect the typhoid burden in Yogyakarta, Indonesia"],"prefix":"10.1016","volume":"266","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3556-3028","authenticated-orcid":false,"given":"Vicka","family":"Oktaria","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9174-8425","authenticated-orcid":false,"given":"Indah Kartika","family":"Murni","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6654-886X","authenticated-orcid":false,"given":"Amanda","family":"Handley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Celeste M.","family":"Donato","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Titik","family":"Nuryastuti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Endah","family":"Supriyati","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David T.","family":"McCarthy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emma","family":"Watts","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3919-4853","authenticated-orcid":false,"given":"Rizka","family":"Dinari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hendri Marinda","family":"Sari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jarir At","family":"Thobari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ida Safitri","family":"Laksono","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5452-6601","authenticated-orcid":false,"given":"Julie E.","family":"Bines","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.ijheh.2025.114572_bib1","series-title":"Extraction and qPCR of Environmental Surveillance Samples for the Detection of Salmonella Typhi","author":"Abraham","year":"2022"},{"key":"10.1016\/j.ijheh.2025.114572_bib2","doi-asserted-by":"crossref","first-page":"231","DOI":"10.3390\/w8060231","article-title":"Current status of marker genes of Bacteroides and related taxa for identifying sewage pollution in environmental waters","volume":"8","author":"Ahmed","year":"2016","journal-title":"Water"},{"key":"10.1016\/j.ijheh.2025.114572_bib3","doi-asserted-by":"crossref","first-page":"252","DOI":"10.1016\/j.envint.2019.01.035","article-title":"A duplex PCR assay for the simultaneous quantification of Bacteroides HF183 and crAssphage CPQ_056 marker genes in untreated sewage and stormwater","volume":"126","author":"Ahmed","year":"2019","journal-title":"Environ. Int."},{"key":"10.1016\/j.ijheh.2025.114572_bib4","doi-asserted-by":"crossref","first-page":"23","DOI":"10.3390\/medicina54020023","article-title":"Typhoid fever diagnosis in endemic countries: a clog in the wheel of progress?","volume":"54","author":"Ajibola","year":"2018","journal-title":"Medicina"},{"key":"10.1016\/j.ijheh.2025.114572_bib5","doi-asserted-by":"crossref","first-page":"S71","DOI":"10.1093\/cid\/ciaa513","article-title":"Environmental surveillance as a tool for identifying high-risk settings for typhoid transmission","volume":"71","author":"Andrews","year":"2020","journal-title":"Clin. Infect. Dis. Off. Publ. Infect. Dis. Soc. Am."},{"key":"10.1016\/j.ijheh.2025.114572_bib6","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pntd.0005376","article-title":"The burden of typhoid fever in low- and middle-income countries: a meta-regression approach","volume":"11","author":"Antill\u00f3n","year":"2017","journal-title":"PLoS Neglected Trop. Dis."},{"key":"10.1016\/j.ijheh.2025.114572_bib7","doi-asserted-by":"crossref","first-page":"S31","DOI":"10.1093\/cid\/ciy927","article-title":"Revised global typhoid vaccination policy","volume":"68","author":"Bentsi-Enchill","year":"2019","journal-title":"Clin. Infect. Dis. Off. Publ. Infect. Dis. Soc. Am."},{"key":"10.1016\/j.ijheh.2025.114572_bib8","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2022.155347","article-title":"Passive sampling to scale wastewater surveillance of infectious disease: lessons learned from COVID-19","volume":"835","author":"Bivins","year":"2022","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ijheh.2025.114572_bib9","doi-asserted-by":"crossref","first-page":"148","DOI":"10.1016\/j.watres.2017.10.071","article-title":"A human fecal contamination score for ranking recreational sites using the HF183\/BacR287 quantitative real-time PCR method","volume":"128","author":"Cao","year":"2018","journal-title":"Water Res."},{"key":"10.1016\/j.ijheh.2025.114572_bib10","doi-asserted-by":"crossref","first-page":"S102","DOI":"10.1093\/cid\/ciaa367","volume":"71","author":"Carey","year":"2020","journal-title":"Clin. Infect. Dis. Off. Publ. Infect. Dis. Soc. Am."},{"key":"10.1016\/j.ijheh.2025.114572_bib11","article-title":"Guidance for reducing health risks to workers handling human waste or [WWW document]","year":"2022","journal-title":"Cent Dis. Control Prev."},{"key":"10.1016\/j.ijheh.2025.114572_bib12","doi-asserted-by":"crossref","first-page":"S74","DOI":"10.1093\/ofid\/ofad055","article-title":"Taking on typhoid: eliminating typhoid fever as a global health problem","volume":"10","author":"Chen","year":"2023","journal-title":"Open Forum Infect. Dis."},{"key":"10.1016\/j.ijheh.2025.114572_bib13","first-page":"4838","article-title":"Evaluation of host-specific Bacteroidales 16S rRNA gene markers as a complementary tool for detecting fecal pollution in a prairie watershed","volume":"43","author":"Fremaux","year":"2009","journal-title":"Water Res. Cross Valid. Detect. Method. Pathog. Fecal Indicat."},{"key":"10.1016\/j.ijheh.2025.114572_bib14","doi-asserted-by":"crossref","DOI":"10.1016\/j.envres.2021.112058","article-title":"Passive sampling, a practical method for wastewater-based surveillance of SARS-CoV-2","volume":"204","author":"Habtewold","year":"2022","journal-title":"Environ. Res."},{"key":"10.1016\/j.ijheh.2025.114572_bib15","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1016\/j.scitotenv.2013.08.093","article-title":"Effects of rainfall events on the occurrence and detection efficiency of viruses in river water impacted by combined sewer overflows","volume":"468\u2013469","author":"Hata","year":"2014","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ijheh.2025.114572_bib16","doi-asserted-by":"crossref","first-page":"348","DOI":"10.1016\/j.syapm.2010.06.001","article-title":"Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR","volume":"33","author":"Haugland","year":"2010","journal-title":"Syst. Appl. Microbiol."},{"key":"10.1016\/j.ijheh.2025.114572_bib17","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.170921","article-title":"Detection of SARS-CoV-2 and Omicron variant RNA in wastewater samples from Manila, Philippines","volume":"919","author":"Inson","year":"2024","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ijheh.2025.114572_bib18","article-title":"GBD results","year":"2021","journal-title":"Inst. Health Metr. Eval."},{"key":"10.1016\/j.ijheh.2025.114572_bib20","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1016\/j.scitotenv.2017.07.235","article-title":"Application of a microbial source tracking based on bacterial and chemical markers in headwater and coastal catchments","volume":"610\u2013611","author":"Jard\u00e9","year":"2018","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ijheh.2025.114572_bib21","doi-asserted-by":"crossref","first-page":"e976","DOI":"10.1016\/S2214-109X(23)00170-5","article-title":"Wastewater monitoring can anchor global disease surveillance systems","volume":"11","author":"Keshaviah","year":"2023","journal-title":"Lancet Global Health"},{"key":"10.1016\/j.ijheh.2025.114572_bib22","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1093\/aje\/kwac175","article-title":"Wastewater surveillance for infectious disease: a systematic review","volume":"192","author":"Kilaru","year":"2023","journal-title":"Am. J. Epidemiol."},{"key":"10.1016\/j.ijheh.2025.114572_bib23","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pntd.0011341","article-title":"Environmental sampling for typhoidal Salmonellas in household and surface waters in Nepal identifies potential transmission pathways","volume":"17","author":"LeBoa","year":"2023","journal-title":"PLoS Neglected Trop. Dis."},{"key":"10.1016\/j.ijheh.2025.114572_bib24","article-title":"Development of Moore swab and ultrafiltration concentration and detection methods for Salmonella typhi and Salmonella Paratyphi A in wastewater and application in Kolkata, India and Dhaka, Bangladesh","volume":"12","author":"Liu","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.ijheh.2025.114572_bib25","doi-asserted-by":"crossref","first-page":"5318","DOI":"10.1007\/s11356-013-2361-y","article-title":"Variation of raw wastewater microbiological quality in dry and wet weather conditions","volume":"21","author":"Lucas","year":"2014","journal-title":"Environ. Sci. Pollut. Res."},{"key":"10.1016\/j.ijheh.2025.114572_bib26","doi-asserted-by":"crossref","first-page":"2315","DOI":"10.1016\/j.watres.2013.02.009","article-title":"Quantitative multi-year elucidation of fecal sources of waterborne pathogen contamination in the South Nation River basin using Bacteroidales microbial source tracking markers","volume":"47","author":"Marti","year":"2013","journal-title":"Water Res."},{"key":"10.1016\/j.ijheh.2025.114572_bib27","doi-asserted-by":"crossref","first-page":"S79","DOI":"10.1093\/cid\/ciaa487","article-title":"Review of methods suitable for environmental surveillance of Salmonella Typhi and Paratyphi","volume":"71","author":"Matrajt","year":"2020","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.ijheh.2025.114572_bib28","doi-asserted-by":"crossref","DOI":"10.1177\/11786361221150760","article-title":"The prevalence of multi-drug resistant Salmonella typhi isolated from blood sample","volume":"16","author":"Mina","year":"2023","journal-title":"Microbiol. Insights"},{"key":"10.1016\/j.ijheh.2025.114572_bib29","series-title":"Keputusan Menteri Kesehatan Republik Indonesia Nomor 364\/MENKES\/SK\/V\/2006 Tentang Pedoman Pengendalian Demam Tifoid","year":"2006"},{"key":"10.1016\/j.ijheh.2025.114572_bib30","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0274793","article-title":"The feasibility of SARS-CoV-2 surveillance using wastewater and environmental sampling in Indonesia","volume":"17","author":"Murni","year":"2022","journal-title":"PLoS One"},{"key":"10.1016\/j.ijheh.2025.114572_bib31","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.00167-19","article-title":"Real-time PCR assay for differentiation of typhoidal and nontyphoidal Salmonella","volume":"57","author":"Nair","year":"2019","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ijheh.2025.114572_bib32","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1016\/j.watres.2017.04.027","article-title":"Bacteroidales markers for microbial source tracking in Southeast Asia","volume":"118","author":"Nshimyimana","year":"2017","journal-title":"Water Res."},{"key":"10.1016\/j.ijheh.2025.114572_bib33","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1080\/14760584.2017.1255553","article-title":"The unrecognized burden of typhoid fever","volume":"16","author":"Obaro","year":"2017","journal-title":"Expert Rev. Vaccines"},{"key":"10.1016\/j.ijheh.2025.114572_bib34","doi-asserted-by":"crossref","first-page":"1770","DOI":"10.1056\/NEJMra020201","article-title":"Typhoid fever","volume":"347","author":"Parry","year":"2002","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.ijheh.2025.114572_bib35","doi-asserted-by":"crossref","first-page":"1503","DOI":"10.1111\/jam.15237","article-title":"Optimized methods for detecting Salmonella Typhi in the environment using validated field sampling, culture and confirmatory molecular approaches","volume":"132","author":"Rigby","year":"2022","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.ijheh.2025.114572_bib36","doi-asserted-by":"crossref","first-page":"10432","DOI":"10.1021\/acs.est.1c01530","article-title":"Passive sampling of SARS-CoV-2 for wastewater surveillance","volume":"55","author":"Schang","year":"2021","journal-title":"Environ. Sci. Technol."},{"key":"10.1016\/j.ijheh.2025.114572_bib37","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.00060-20","article-title":"Reviving the \u201cMoore swab\u201d: a classic environmental surveillance tool involving filtration of flowing surface water and sewage water to recover typhoidal Salmonella bacteria","volume":"86","author":"Sikorski","year":"2020","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.ijheh.2025.114572_bib38","doi-asserted-by":"crossref","DOI":"10.3389\/fpubh.2024.1445961","article-title":"A narrative review of wastewater surveillance: pathogens of concern, applications, detection methods, and challenges","volume":"12","author":"Singh","year":"2024","journal-title":"Front. Public Health"},{"key":"10.1016\/j.ijheh.2025.114572_bib39","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.177449","article-title":"Assessment of environmental factors influencing SARS-CoV-2 in Vietnam's surface water across two years of clinical data","volume":"957","author":"Siri","year":"2024","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ijheh.2025.114572_bib40","first-page":"4674","article-title":"Estimated human health risks from exposure to recreational waters impacted by human and non-human sources of faecal contamination","volume":"44","author":"Soller","year":"2010","journal-title":"Water Res. Shift. Paradigms Assess. Recreat. Water Quality"},{"key":"10.1016\/j.ijheh.2025.114572_bib41","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1016\/S1473-3099(18)30685-6","article-title":"The global burden of typhoid and paratyphoid fevers: a systematic analysis for the Global Burden of Disease Study 2017","volume":"19","author":"Stanaway","year":"2019","journal-title":"Lancet Infect. Dis."},{"key":"10.1016\/j.ijheh.2025.114572_bib42","doi-asserted-by":"crossref","first-page":"876","DOI":"10.3390\/v15040876","article-title":"SARS-CoV-2 variants detection strategies in wastewater samples collected in the Bangkok Metropolitan region","volume":"15","author":"Tangwangvivat","year":"2023","journal-title":"Viruses"},{"key":"10.1016\/j.ijheh.2025.114572_bib43","series-title":"Operating Procedure of Wastewater Sampling","year":"2013"},{"key":"10.1016\/j.ijheh.2025.114572_bib44","article-title":"Environmental surveillance for Salmonella typhi and its association with typhoid fever incidence in India and Malawi","author":"Uzzell","year":"2023","journal-title":"J. Infect. Dis. jiad427"},{"key":"10.1016\/j.ijheh.2025.114572_bib45","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2023.164180","article-title":"Passive swab versus grab sampling for detection of SARS-CoV-2 markers in wastewater","volume":"889","author":"West","year":"2023","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.ijheh.2025.114572_bib46","doi-asserted-by":"crossref","first-page":"359","DOI":"10.3390\/pathogens11030359","article-title":"Comparison of auto sampling and passive sampling methods for SARS-CoV-2 detection in wastewater","volume":"11","author":"Wilson","year":"2022","journal-title":"Pathog. Basel Switz."},{"key":"10.1016\/j.ijheh.2025.114572_bib47","series-title":"Typhoid Vaccines: WHO Position Paper - March 2018 (No. 13), Weekly Epidemiological Record","year":"2018"}],"container-title":["International Journal of Hygiene and Environmental Health"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1438463925000549?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1438463925000549?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,8,8]],"date-time":"2026-08-08T20:30:38Z","timestamp":1786221038000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1438463925000549"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,5]]},"references-count":46,"alternative-id":["S1438463925000549"],"URL":"https:\/\/doi.org\/10.1016\/j.ijheh.2025.114572","relation":{},"ISSN":["1438-4639"],"issn-type":[{"value":"1438-4639","type":"print"}],"subject":[],"published":{"date-parts":[[2025,5]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Environmental surveillance for Salmonella Typhi to detect the typhoid burden in Yogyakarta, Indonesia","name":"articletitle","label":"Article Title"},{"value":"International Journal of Hygiene and Environmental Health","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ijheh.2025.114572","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 The Authors. Published by Elsevier GmbH.","name":"copyright","label":"Copyright"}],"article-number":"114572"}}