{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,5]],"date-time":"2024-08-05T22:40:25Z","timestamp":1722897625185},"reference-count":47,"publisher":"Elsevier BV","issue":"4-5","license":[{"start":{"date-parts":[[2017,6,1]],"date-time":"2017-06-01T00:00:00Z","timestamp":1496275200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":["clinicalkey.jp","clinicalkey.com","clinicalkey.es","clinicalkey.com.au","clinicalkey.fr","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["International Journal of Medical Microbiology"],"published-print":{"date-parts":[[2017,6]]},"DOI":"10.1016\/j.ijmm.2017.03.002","type":"journal-article","created":{"date-parts":[[2017,3,28]],"date-time":"2017-03-28T16:20:40Z","timestamp":1490718040000},"page":"268-275","update-policy":"http:\/\/dx.doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":12,"title":["Role of the SRRz\/Rz1 lambdoid lysis cassette in the pathoadaptive evolution of Shigella"],"prefix":"10.1016","volume":"307","author":[{"given":"Adriano","family":"Leuzzi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Milena","family":"Grossi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maria Letizia","family":"Di Martino","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martina","family":"Pasqua","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gioacchino","family":"Micheli","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bianca","family":"Colonna","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gianni","family":"Prosseda","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.ijmm.2017.03.002_bib0005","doi-asserted-by":"crossref","first-page":"45","DOI":"10.3389\/fcimb.2016.00045","article-title":"Shigella diversity and changing landscape: insights for the twenty-first century","volume":"6","author":"Anderson","year":"2016","journal-title":"Front. Cell. Infect. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0010","doi-asserted-by":"crossref","first-page":"219","DOI":"10.3389\/fimmu.2015.00219","article-title":"Shigella manipulates host immune responses by delivering effector proteins with specific roles","volume":"6","author":"Ashida","year":"2015","journal-title":"Front. Immunol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0015","doi-asserted-by":"crossref","first-page":"e27226","DOI":"10.1371\/journal.pone.0027226","article-title":"A new piece of the Shigella pathogenicity puzzle: spermidine accumulationby silencing of the speG gene","volume":"6","author":"Barbagallo","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0020","doi-asserted-by":"crossref","DOI":"10.1080\/19490976.2017.1293225","article-title":"The Galleria mellonella larvae as an in vivo model for evaluation of Shigella virulence","author":"Barnoy","year":"2017","journal-title":"Gut Microbes"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0025","doi-asserted-by":"crossref","first-page":"341","DOI":"10.1111\/j.1365-2958.2008.06408.x","article-title":"The final step in the phage infection cycle: the Rz and Rz1 lysis proteins link the inner and outer membranes","volume":"70","author":"Berry","year":"2008","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0030","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1016\/j.ijmm.2014.12.019","article-title":"Peptidoglycan perception\u2014sensing bacteria by their common envelope structure","volume":"305","author":"Bertsche","year":"2015","journal-title":"Int. J. Med. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0035","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1093\/intimm\/dxs116","article-title":"Regulation of intestinal microbiota by the NLR protein family","volume":"25","author":"Biswas","year":"2013","journal-title":"Int. Immunol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0040","doi-asserted-by":"crossref","first-page":"1453","DOI":"10.1126\/science.277.5331.1453","article-title":"The complete genome sequence of Escherichia coli K-12","volume":"277","author":"Blattner","year":"1997","journal-title":"Science"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0045","doi-asserted-by":"crossref","first-page":"4061","DOI":"10.1128\/IAI.00740-12","article-title":"Antivirulence genes: insights into pathogen evolution through gene loss","volume":"80","author":"Bliven","year":"2012","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0050","doi-asserted-by":"crossref","first-page":"12127","DOI":"10.1073\/pnas.1405336111","article-title":"Pervasive domestication of defective prophages by bacteria","volume":"111","author":"Bobay","year":"2014","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0055","doi-asserted-by":"crossref","first-page":"484","DOI":"10.1111\/j.1749-6632.1980.tb27987.x","article-title":"A theory of modular evolution for bacteriophages","volume":"354","author":"Botstein","year":"1980","journal-title":"Ann. N. Y. Acad. Sci."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0060","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1016\/B978-0-12-394621-8.00014-5","article-title":"Bacteriophage-encoded bacterial virulence factors and phage-pathogenicity island interactions","volume":"82","author":"Boyd","year":"2012","journal-title":"Adv. Virus Res."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0065","doi-asserted-by":"crossref","first-page":"560","DOI":"10.1128\/MMBR.68.3.560-602.2004","article-title":"Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion","volume":"68","author":"Br\u00fcssow","year":"2004","journal-title":"Microbiol. Mol. Biol. Rev."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0070","doi-asserted-by":"crossref","first-page":"e42","DOI":"10.1371\/journal.ppat.0020042","article-title":"Crossing the line: selection and evolution of virulence traits","volume":"2","author":"Brown","year":"2006","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0075","doi-asserted-by":"crossref","first-page":"e106589","DOI":"10.1371\/journal.pone.0106589","article-title":"Molecular and functional profiling of the polyamine content in enteroinvasive E. coli\u200a: looking into the gap between commensal E. coli and harmful Shigella","volume":"9","author":"Campilongo","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0080","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1016\/j.ijmm.2004.11.001","article-title":"Molecular evolution of the lysine decarboxylase-defective phenotype in Shigella sonnei","volume":"294","author":"Casalino","year":"2005","journal-title":"Int. J. Med. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0085","doi-asserted-by":"crossref","first-page":"7471","DOI":"10.1128\/IAI.69.12.7471-7480.2001","article-title":"Pathoadaptive mutations that enhance virulence: genetic organization of the cadA regions of Shigella spp","volume":"69","author":"Day","year":"2001","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0090","doi-asserted-by":"crossref","first-page":"651","DOI":"10.1016\/j.ijmm.2013.09.007","article-title":"Molecular evolution of the nicotinic acid requirement within the Shigella\/EIEC pathotype","volume":"303","author":"Di Martino","year":"2013","journal-title":"Int. J. Med. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0095","doi-asserted-by":"crossref","first-page":"354","DOI":"10.4161\/viru.24498","article-title":"Importance of prophages to evolution and virulence of bacterial pathogens","volume":"4","author":"Fortier","year":"2013","journal-title":"Virulence"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0100","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1186\/1755-8794-1-63","article-title":"Global gene expression analyses of bystander and alpha particle irradiated normal human lung fibroblasts: synchronous and differential responses","volume":"1","author":"Ghandhi","year":"2008","journal-title":"BMC Med. Genomics"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0105","doi-asserted-by":"crossref","first-page":"3362","DOI":"10.1093\/nar\/gkq025","article-title":"A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri","volume":"38","author":"Giangrossi","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0110","doi-asserted-by":"crossref","first-page":"3599","DOI":"10.1128\/JB.186.11.3599-3608.2004","article-title":"DNA binding regions of Q proteins of phages lambda and phi80","volume":"186","author":"Guo","year":"2004","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0115","doi-asserted-by":"crossref","first-page":"6562","DOI":"10.1073\/pnas.93.13.6562","article-title":"Nucleator-dependent intercellular assembly of adhesive curli organelles in Escherichia coli","volume":"93","author":"Hammar","year":"1996","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0120","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1128\/AAC.01952-12","article-title":"New life for an old drug: the anthelmintic drug niclosamide inhibits Pseudomonas aeruginosa quorum sensing","volume":"57","author":"Imperi","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0125","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/j.it.2013.10.009","article-title":"Detection of enteric pathogens by the nodosome","volume":"35","author":"Keestra","year":"2014","journal-title":"Trends Immunol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0130","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1038\/nri910","article-title":"NF-kappaB regulation in the immune system","volume":"2","author":"Li","year":"2002","journal-title":"Nat. Rev. Immunol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0135","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1006\/meth.2001.1262","article-title":"Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method","volume":"25","author":"Livak","year":"2001","journal-title":"Methods"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0140","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1111\/j.1365-2958.1993.tb01707.x","article-title":"The absence of a surface protease, OmpT, determines the intercellular spreading ability of Shigella: the relationship between the ompT and kcpA loci","volume":"9","author":"Nakata","year":"1993","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0145","doi-asserted-by":"crossref","first-page":"682","DOI":"10.1111\/j.1462-5822.2007.01075.x","article-title":"Muramylpeptide shedding modulates cell sensing of Shigella flexneri","volume":"10","author":"Nigro","year":"2008","journal-title":"Cell. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0150","doi-asserted-by":"crossref","first-page":"33878","DOI":"10.1074\/jbc.M303749200","article-title":"The invasive phenotype of Shigella flexneri directs a distinct gene expression pattern in the human intestinal epithelial cell line Caco-2","volume":"278","author":"P\u00e9dron","year":"2003","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0155","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1038\/sj.icb7100025","article-title":"Shigella\u2019s ways of manipulating the host intestinal innate and adaptive immune system: a tool box for survival?","volume":"85","author":"Phalipon","year":"2007","journal-title":"Immunol. Cell Biol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0160","doi-asserted-by":"crossref","first-page":"4681","DOI":"10.1128\/JB.00332-06","article-title":"Plasticity of the P junc promoter of ISEc11, a new insertion sequence of the IS1111 family","volume":"188","author":"Prosseda","year":"2006","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0165","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1016\/j.resmic.2012.07.004","article-title":"Shedding of genes that interfere with the pathogenic lifestyle: the Shigella model","volume":"163","author":"Prosseda","year":"2012","journal-title":"Res. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0170","doi-asserted-by":"crossref","first-page":"2363","DOI":"10.1099\/mic.0.2007\/006916-0","article-title":"nadA and nadB of Shigella flexneri 5a are antivirulence loci responsible for the synthesis of quinolinate, a small molecule inhibitor of Shigella pathogenicity","volume":"153","author":"Prunier","year":"2007","journal-title":"Microbiology"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0175","doi-asserted-by":"crossref","first-page":"10567","DOI":"10.1073\/pnas.180094797","article-title":"Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics","volume":"97","author":"Pupo","year":"2000","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0180","doi-asserted-by":"crossref","first-page":"1683","DOI":"10.1099\/mic.0.000115","article-title":"The lysis cassette of DLP12 defective prophage is regulated by RpoE","volume":"161","author":"Rueggeberg","year":"2015","journal-title":"Microbiology"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0185","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1128\/IAI.35.3.852-860.1982","article-title":"Involvement of a plasmid in the invasive ability of Shigella flexneri","volume":"35","author":"Sansonetti","year":"1982","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0190","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1196\/annals.1326.025","article-title":"The bacterial weaponry: lessons from Shigella","volume":"1072","author":"Sansonetti","year":"2006","journal-title":"Ann. N. Y. Acad. Sci."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0195","doi-asserted-by":"crossref","first-page":"e36446","DOI":"10.1371\/journal.pone.0036446","article-title":"Quantitative RT-PCR profiling of the rabbit immune response: assessment of acute Shigella flexneri infection","volume":"7","author":"Schnupf","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0200","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1128\/CMR.00032-07","article-title":"Molecular pathogenesis of Shigella spp.: controlling host cell signaling, invasion, and death by type III secretion","volume":"21","author":"Schroeder","year":"2008","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0205","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1016\/S0966-842X(99)01493-6","article-title":"Pathoadaptive mutations: gene loss and variation in bacterial pathogens","volume":"7","author":"Sokurenko","year":"1999","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0210","doi-asserted-by":"crossref","first-page":"979","DOI":"10.1007\/s12038-007-0097-x","article-title":"Subclassification and targeted characterization of prophage-encoded two-component cell lysis cassette","volume":"32","author":"Srividhya","year":"2007","journal-title":"J. Biosci."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0215","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1089\/mdr.1996.2.147","article-title":"Bacteriophage lambda lysis gene product modified and inserted into Escherichia coli outer membrane: Rz1 lipoprotein","volume":"2","author":"Taylor","year":"1996","journal-title":"Microb. Drug Resist."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0220","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1038\/nrmicro.2016.10","article-title":"The genomic signatures of Shigella evolution, adaptation and geographical spread","volume":"14","author":"The","year":"2016","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0225","doi-asserted-by":"crossref","first-page":"1640","DOI":"10.1099\/mic.0.045161-0","article-title":"Role of DLP12 lysis genes in Escherichia coli biofilm formation","volume":"157","author":"Toba","year":"2011","journal-title":"Microbiology"},{"key":"10.1016\/j.ijmm.2017.03.002_bib0230","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1038\/ncomms1146","article-title":"Cryptic prophages help bacteria cope with adverse environments","volume":"1","author":"Wang","year":"2010","journal-title":"Nat. Commun."},{"key":"10.1016\/j.ijmm.2017.03.002_bib0235","first-page":"34","article-title":"Universal cloning method by TA strategy","volume":"19","author":"Zhou","year":"1995","journal-title":"Biotechniques"}],"container-title":["International Journal of Medical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S143842211630368X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S143842211630368X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,10,4]],"date-time":"2020-10-04T14:44:18Z","timestamp":1601822658000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S143842211630368X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,6]]},"references-count":47,"journal-issue":{"issue":"4-5","published-print":{"date-parts":[[2017,6]]}},"alternative-id":["S143842211630368X"],"URL":"https:\/\/doi.org\/10.1016\/j.ijmm.2017.03.002","relation":{},"ISSN":["1438-4221"],"issn-type":[{"value":"1438-4221","type":"print"}],"subject":[],"published":{"date-parts":[[2017,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Role of the SRRz\/Rz1 lambdoid lysis cassette in the pathoadaptive evolution of Shigella","name":"articletitle","label":"Article Title"},{"value":"International Journal of Medical Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ijmm.2017.03.002","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2017 Elsevier GmbH. All rights reserved.","name":"copyright","label":"Copyright"}]}}