{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,6]],"date-time":"2026-11-06T04:27:39Z","timestamp":1793939259592,"version":"4.8.0"},"reference-count":26,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,12,1]],"date-time":"2026-12-01T00:00:00Z","timestamp":1796083200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,12,1]],"date-time":"2026-12-01T00:00:00Z","timestamp":1796083200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,11]],"date-time":"2026-09-11T00:00:00Z","timestamp":1789084800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["International Journal of Medical Microbiology"],"published-print":{"date-parts":[[2026,12]]},"DOI":"10.1016\/j.ijmm.2026.151737","type":"journal-article","created":{"date-parts":[[2026,9,22]],"date-time":"2026-09-22T16:51:49Z","timestamp":1790095909000},"page":"151737","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Whole-genome sequencing of SARS-CoV-2 virus in clinical isolates at a tertiary care centre: A retrospective cross-sectional study"],"prefix":"10.1016","volume":"323","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6202-8784","authenticated-orcid":false,"given":"Vishal","family":"Shete","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Meena","family":"Mishra","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rashmi","family":"Mudliar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shivani","family":"Jha","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rahul","family":"Suryawanshi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Varsha","family":"Potdar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Neeta","family":"Gade","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Soumyabrata","family":"Nag","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"1","key":"10.1016\/j.ijmm.2026.151737_bib1","doi-asserted-by":"crossref","first-page":"220","DOI":"10.1038\/s41598-023-50363-2","article-title":"Spatio-temporal epidemiology and associated indicators of COVID-19 (wave-I and II) in India","volume":"14","author":"Balasubramani","year":"2024","journal-title":"Sci. Rep."},{"issue":"04","key":"10.1016\/j.ijmm.2026.151737_bib2","doi-asserted-by":"crossref","first-page":"239","DOI":"10.2471\/BLT.22.288220","article-title":"Global genomic surveillance strategy for pathogens with pandemic and epidemic potential 2022\u20132032","volume":"100","author":"Carter","year":"2022","journal-title":"Bull. World Health Organ."},{"issue":"6","key":"10.1016\/j.ijmm.2026.151737_bib3","doi-asserted-by":"crossref","first-page":"2449","DOI":"10.4103\/jfmpc.jfmpc_1107_23","article-title":"COVID-19 pandemic - Cocktail of variants, a study from Northern India","volume":"13","author":"Chaudhary","year":"2024","journal-title":"J. Fam. Med. Prim. Care"},{"issue":"4","key":"10.1016\/j.ijmm.2026.151737_bib4","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1038\/s41588-022-01033-y","article-title":"Global landscape of SARS-CoV-2 genomic surveillance and data sharing","volume":"54","author":"Chen","year":"2022","journal-title":"Nat. Genet."},{"issue":"7","key":"10.1016\/j.ijmm.2026.151737_bib5","doi-asserted-by":"crossref","first-page":"1542","DOI":"10.3390\/microorganisms9071542","article-title":"SARS-CoV-2 Spike Mutations, L452R, T478K, E484Q and P681R, in the Second Wave of COVID-19 in Maharashtra, India","volume":"9","author":"Cherian","year":"2021","journal-title":"Microorganisms"},{"issue":"15","key":"10.1016\/j.ijmm.2026.151737_bib6","doi-asserted-by":"crossref","first-page":"324","DOI":"10.46234\/ccdcw2024.061","article-title":"Genomic Surveillance for SARS-CoV-2 Variants: Dominance of XBB Replacement \u2014 China, January\u2013June 2023","volume":"6","author":"Feng","year":"2024","journal-title":"China CDC Wkly"},{"key":"10.1016\/j.ijmm.2026.151737_bib7","unstructured":"INSACOG BULLETIN 22 August 2022."},{"key":"10.1016\/j.ijmm.2026.151737_bib8","doi-asserted-by":"crossref","unstructured":"Kandel S., Hartzell S.L., Ingold A.K., Turner G.A., Kennedy J.L., Ussery D.W. Genomic Surveillance of SARS-CoV-2 Using Long-Range PCR Primers [Internet]. 2023 [cited 2024 Sep 18]. Available from: http:\/\/biorxiv.org\/lookup\/doi\/10.1101\/2023.07.10.548464 doi:10.1101\/2023.07.10.548464.","DOI":"10.1101\/2023.07.10.548464"},{"issue":"11","key":"10.1016\/j.ijmm.2026.151737_bib9","article-title":"Genomic Characterization of an Emerging SARS-CoV-2 Variant During the Early Second Wave of the SARS-CoV-2 Pandemic in Maharashtra, India","volume":"15","author":"Karyakarte","year":"2023","journal-title":"Cureus"},{"key":"10.1016\/j.ijmm.2026.151737_bib10","article-title":"Appearance and Prevalence of JN.1 SARS-CoV-2 Variant in India and Its Clinical Profile in the State of Maharashtra","author":"Karyakarte","year":"2024","journal-title":"Cureus"},{"key":"10.1016\/j.ijmm.2026.151737_bib11","doi-asserted-by":"crossref","DOI":"10.1016\/j.virusres.2024.199365","article-title":"COVID-19 genome surveillance: A geographical landscape and mutational mapping of SARS-CoV-2 variants in central India over two years","volume":"344","author":"Khairnar","year":"2024","journal-title":"Virus Res."},{"issue":"24","key":"10.1016\/j.ijmm.2026.151737_bib12","doi-asserted-by":"crossref","first-page":"651","DOI":"10.15585\/mmwr.mm7224a2","article-title":"Genomic Surveillance for SARS-CoV-2 Variants: Circulation of Omicron Lineages \u2014 United States, January 2022\u2013May 2023","volume":"16;72","author":"Ma","year":"2023","journal-title":"MMWR Morb. Mortal. Wkly Rep."},{"key":"10.1016\/j.ijmm.2026.151737_bib13","article-title":"Genome sequencing of the first SARS-CoV-2 reported from patients with COVID-19 in Ecuador","author":"M\u00e1rquez","year":"2020","journal-title":"MedRxiv Prepr. Serv. Health Sci."},{"key":"10.1016\/j.ijmm.2026.151737_bib14","doi-asserted-by":"crossref","DOI":"10.3389\/fepid.2022.939291","article-title":"Genomic approaches for monitoring transmission dynamics of malaria: a case for malaria molecular surveillance in Sub\u2013Saharan Africa","volume":"2","author":"Mensah","year":"2022","journal-title":"Front. Epidemiol."},{"issue":"1","key":"10.1016\/j.ijmm.2026.151737_bib15","article-title":"Genomic epidemiology of SARS-CoV-2 from Uttar Pradesh, India","volume":"13","author":"Misra","year":"2023","journal-title":"Sci. Rep."},{"issue":"2","key":"10.1016\/j.ijmm.2026.151737_bib16","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1007\/s00203-023-03807-2","article-title":"A comprehensive profile of SARS-CoV-2 variants spreading during the COVID-19 pandemic: a genomic characterization study from Chhattisgarh State, India","volume":"206","author":"Negi","year":"2024","journal-title":"Arch. Microbiol."},{"issue":"56","key":"10.1016\/j.ijmm.2026.151737_bib17","doi-asserted-by":"crossref","first-page":"118976","DOI":"10.1007\/s11356-023-30709-z","article-title":"Genomic surveillance reveals early detection and transition of delta to omicron lineages of SARS-CoV-2 variants in wastewater treatment plants of Pune, India","volume":"30","author":"Rajput","year":"2023","journal-title":"Environ. Sci. Pollut. Res. Int."},{"issue":"7","key":"10.1016\/j.ijmm.2026.151737_bib18","doi-asserted-by":"crossref","first-page":"1131","DOI":"10.1038\/s41591-021-01397-4","article-title":"SARS-CoV-2 variants of concern are emerging in India","volume":"27","author":"Singh","year":"2021","journal-title":"Nat. Med."},{"key":"10.1016\/j.ijmm.2026.151737_bib19","article-title":"Mutational characterization of Omicron SARS-CoV-2 lineages circulating in Chhattisgarh, a central state of India","volume":"9","author":"Singh","year":"2022","journal-title":"Front. Med."},{"key":"10.1016\/j.ijmm.2026.151737_bib20","article-title":"Genomic surveillance of SARS-CoV-2 upsurge in India due to Omicron sub-lineages BA.2.74, BA.2.75 and BA.2.76","volume":"11","author":"Singh","year":"2023","journal-title":"Lancet Reg. Health - Southeast. Asia"},{"issue":"1","key":"10.1016\/j.ijmm.2026.151737_bib21","doi-asserted-by":"crossref","first-page":"64","DOI":"10.3390\/v17010064","article-title":"Two Years of SARS-CoV-2 Omicron Genomic Evolution in Brazil (2022-2024): Subvariant Tracking and Assessment of Regional Sequencing Efforts","volume":"17","author":"Souza","year":"2025","journal-title":"Viruses"},{"issue":"1","key":"10.1016\/j.ijmm.2026.151737_bib22","doi-asserted-by":"crossref","first-page":"2800","DOI":"10.1038\/s41467-023-38435-3","article-title":"Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants","volume":"14","author":"Tamura","year":"2023","journal-title":"Nat. Commun."},{"key":"10.1016\/j.ijmm.2026.151737_bib23","article-title":"Genetic surveillance of five SARS-CoV-2 clinical samples in Henan Province using nanopore sequencing","volume":"13","author":"Wang","year":"2022","journal-title":"Front. Immunol."},{"key":"10.1016\/j.ijmm.2026.151737_bib24","series-title":"WHO announces simple, easy-to-say labels for SARS-CoV-2 variants of interest and concern [Internet]","author":"World Health Organization","year":"2021"},{"issue":"3","key":"10.1016\/j.ijmm.2026.151737_bib25","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1016\/j.chom.2020.02.001","article-title":"Genome composition and divergence of the novel coronavirus (2019-nCoV) originating in China","volume":"27","author":"Wu","year":"2020","journal-title":"Cell. Host Microbe"},{"key":"10.1016\/j.ijmm.2026.151737_bib26","first-page":"1","article-title":"Rapid acquisition of high-quality SARS-CoV-2 genome via amplicon-oxford nanopore sequencing","author":"Yan","year":"2021","journal-title":"Virol. Sin."}],"container-title":["International Journal of Medical Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1438422126000408?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1438422126000408?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,11,6]],"date-time":"2026-11-06T04:07:59Z","timestamp":1793938079000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1438422126000408"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,12]]},"references-count":26,"alternative-id":["S1438422126000408"],"URL":"https:\/\/doi.org\/10.1016\/j.ijmm.2026.151737","relation":{},"ISSN":["1438-4221"],"issn-type":[{"value":"1438-4221","type":"print"}],"subject":[],"published":{"date-parts":[[2026,12]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Whole-genome sequencing of SARS-CoV-2 virus in clinical isolates at a tertiary care centre: A retrospective cross-sectional study","name":"articletitle","label":"Article Title"},{"value":"International Journal of Medical Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ijmm.2026.151737","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Author(s). Published by Elsevier GmbH.","name":"copyright","label":"Copyright"}],"article-number":"151737"}}